[cytoscape/cytoscape-impl] 8e69e8: - Labels for the property value columns are now ro...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: 8e69e896b1a7b35e52b0f3fd468cf3175ade2013
  
https://github.com/cytoscape/cytoscape-impl/commit/8e69e896b1a7b35e52b0f3fd468cf3175ade2013
  Author: Christian Lopes 
  Date:   2024-01-23 (Tue, 23 Jan 2024)

  Changed paths:
M 
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VisualPropertySheet.java

  Log Message:
  ---
  - Labels for the property value columns are now rotated and no longer 
abbreviated; improved tooltips.
- Renames the Properties button to "Show Properties", makes the standard button 
border visible and moves it to the property name column.
-- CYTOSCAPE-13128


  Commit: ac8d24597eefbe3d5571749806d81c2c905a8ef7
  
https://github.com/cytoscape/cytoscape-impl/commit/ac8d24597eefbe3d5571749806d81c2c905a8ef7
  Author: Christian Lopes 
  Date:   2024-01-25 (Thu, 25 Jan 2024)

  Changed paths:
M 
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VisualPropertySheet.java

  Log Message:
  ---
  Renames the Properties button to "More Properties" and changes the tooltips 
-- CYTOSCAPE-13128


  Commit: b96d79d53e8bb296e553f3aa9d24eb04181cbb91
  
https://github.com/cytoscape/cytoscape-impl/commit/b96d79d53e8bb296e553f3aa9d24eb04181cbb91
  Author: Christian Lopes 
  Date:   2024-05-08 (Wed, 08 May 2024)

  Changed paths:
M 
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VisualPropertySheet.java

  Log Message:
  ---
  Merge branch 'feature/vizmapper-rotated-labels' into develop


Compare: 
https://github.com/cytoscape/cytoscape-impl/compare/b590ddade997...b96d79d53e8b

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[cytoscape/cytoscape-impl]

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/feature/new-image-manager-ui
  Home:   https://github.com/cytoscape/cytoscape-impl

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[cytoscape/cytoscape.js] e171e2: use cy.window() instead of global window in severa...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/unstable
  Home:   https://github.com/cytoscape/cytoscape.js
  Commit: e171e2fd05c96ecd65066a51d8c83fbca71b1c89
  
https://github.com/cytoscape/cytoscape.js/commit/e171e2fd05c96ecd65066a51d8c83fbca71b1c89
  Author: rett gerst 
  Date:   2024-03-21 (Thu, 21 Mar 2024)

  Changed paths:
M src/extensions/renderer/base/load-listeners.js
M src/extensions/renderer/canvas/drawing-redraw.js
M src/extensions/renderer/canvas/index.js

  Log Message:
  ---
  use cy.window() instead of global window in several more cases


  Commit: 0adefe9534baa51457b8711b6e0aa1cda199ead0
  
https://github.com/cytoscape/cytoscape.js/commit/0adefe9534baa51457b8711b6e0aa1cda199ead0
  Author: rett gerst 
  Date:   2024-03-21 (Thu, 21 Mar 2024)

  Changed paths:
M src/extensions/renderer/base/coord-ele-math/labels.js

  Log Message:
  ---
  update calculateLabelDimensions method to use cy.window() intead of global 
window/document


  Commit: 194b8decf136be087997635eaf0e6e93e110e072
  
https://github.com/cytoscape/cytoscape.js/commit/194b8decf136be087997635eaf0e6e93e110e072
  Author: rett gerst 
  Date:   2024-03-21 (Thu, 21 Mar 2024)

  Changed paths:
M src/extensions/renderer/base/coord-ele-math/labels.js

  Log Message:
  ---
  remove global document comment


  Commit: 2bfefff1f35045076ea7a6d73a0a34adf7412cf7
  
https://github.com/cytoscape/cytoscape.js/commit/2bfefff1f35045076ea7a6d73a0a34adf7412cf7
  Author: Christian Lopes 
  Date:   2024-05-01 (Wed, 01 May 2024)

  Changed paths:
M src/extensions/renderer/base/coord-ele-math/labels.js
M src/extensions/renderer/base/load-listeners.js
M src/extensions/renderer/canvas/drawing-redraw.js
M src/extensions/renderer/canvas/index.js

  Log Message:
  ---
  Merge pull request #3229 from leaksignal/unstable

use cy.window() instead of global window in canvas renderer (jsdom/node-canvas 
support)


Compare: 
https://github.com/cytoscape/cytoscape.js/compare/3ea4144d21f3...2bfefff1f350

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[cytoscape/cytoscape.js] 8bf33b: :sparkles: Keep original separator instead of usin...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/unstable
  Home:   https://github.com/cytoscape/cytoscape.js
  Commit: 8bf33bb3f7d99714983bdc9748431802fa908ce0
  
https://github.com/cytoscape/cytoscape.js/commit/8bf33bb3f7d99714983bdc9748431802fa908ce0
  Author: EliotRagueneau 
  Date:   2024-03-28 (Thu, 28 Mar 2024)

  Changed paths:
M debug/init.js
M src/extensions/renderer/base/coord-ele-math/labels.js

  Log Message:
  ---
  :sparkles: Keep original separator instead of using space when text-wrapping


  Commit: 3ea4144d21f361e4c65a14d2ae0ec2cd8e2234f6
  
https://github.com/cytoscape/cytoscape.js/commit/3ea4144d21f361e4c65a14d2ae0ec2cd8e2234f6
  Author: Christian Lopes 
  Date:   2024-04-29 (Mon, 29 Apr 2024)

  Changed paths:
M debug/init.js
M src/extensions/renderer/base/coord-ele-math/labels.js

  Log Message:
  ---
  Merge pull request #3236 from EliotRagueneau/fix-text-wrap

Keep original separator instead of using space when text-wrapping


Compare: 
https://github.com/cytoscape/cytoscape.js/compare/6da4c8e8011e...3ea4144d21f3

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[cytoscape/cytoscape-impl] f82607: Minor tweaks to: size of session panels; borders, ...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/release/3.10.2
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: f8260754c692bb036113f613fae9fbd16bec74f9
  
https://github.com/cytoscape/cytoscape-impl/commit/f8260754c692bb036113f613fae9fbd16bec74f9
  Author: Christian Lopes 
  Date:   2024-02-14 (Wed, 14 Feb 2024)

  Changed paths:
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/StarterPanel.java

  Log Message:
  ---
  Minor tweaks to: size of session panels; borders, gradients and preferred 
size of session lists -- CYTOSCAPE-13129


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[cytoscape/cytoscape-impl] 4a4881: Minor tweaks to: size of session panels; borders, ...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: 4a4881527835c660be3b2c6f532a68c6b8df1b85
  
https://github.com/cytoscape/cytoscape-impl/commit/4a4881527835c660be3b2c6f532a68c6b8df1b85
  Author: Christian Lopes 
  Date:   2024-02-12 (Mon, 12 Feb 2024)

  Changed paths:
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/StarterPanel.java

  Log Message:
  ---
  Minor tweaks to: size of session panels; borders, gradients and preferred 
size of session lists -- CYTOSCAPE-13129


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[cytoscape/cytoscape-impl] d3b2af: Adds "py4cytoscape" and "RCy3" to "Help.Automation...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/release/3.10.2
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: d3b2afbbded887c6c24c2c081057f8aacce0d0a9
  
https://github.com/cytoscape/cytoscape-impl/commit/d3b2afbbded887c6c24c2c081057f8aacce0d0a9
  Author: Christian Lopes 
  Date:   2024-02-08 (Thu, 08 Feb 2024)

  Changed paths:
M 
swing-application-impl/src/main/java/org/cytoscape/internal/CyActivator.java
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/StarterPanel.java
A 
swing-application-impl/src/main/java/org/cytoscape/internal/view/help/HelpLinkTaskFactory.java
A 
swing-application-impl/src/main/java/org/cytoscape/internal/view/util/SVGIcon.java
A swing-application-impl/src/main/resources/images/python-logo.svg
A swing-application-impl/src/main/resources/images/r-logo.svg

  Log Message:
  ---
  Adds "py4cytoscape" and "RCy3" to "Help.Automation" menu.
Minor redesign of the Start panel, including the addition of links to 
py4cytoscape and RCy3.
-- CYTOSCAPE-13129


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[cytoscape/cytoscape-impl] d30b26: Adds "py4cytoscape" and "RCy3" to "Help.Automation...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: d30b26c2d630718a37e8425c15854e79b9240045
  
https://github.com/cytoscape/cytoscape-impl/commit/d30b26c2d630718a37e8425c15854e79b9240045
  Author: Christian Lopes 
  Date:   2024-02-06 (Tue, 06 Feb 2024)

  Changed paths:
M 
swing-application-impl/src/main/java/org/cytoscape/internal/CyActivator.java
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/StarterPanel.java
A 
swing-application-impl/src/main/java/org/cytoscape/internal/view/help/HelpLinkTaskFactory.java
A 
swing-application-impl/src/main/java/org/cytoscape/internal/view/util/SVGIcon.java
A swing-application-impl/src/main/resources/images/python-logo.svg
A swing-application-impl/src/main/resources/images/r-logo.svg

  Log Message:
  ---
  Adds "py4cytoscape" and "RCy3" to "Help.Automation" menu.
Minor redesign of the Start panel, including the addition of links to 
py4cytoscape and RCy3.
-- CYTOSCAPE-13129


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[cytoscape/cytoscape-impl] ac8d24: Renames the Properties button to "More Properties"...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/feature/vizmapper-rotated-labels
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: ac8d24597eefbe3d5571749806d81c2c905a8ef7
  
https://github.com/cytoscape/cytoscape-impl/commit/ac8d24597eefbe3d5571749806d81c2c905a8ef7
  Author: Christian Lopes 
  Date:   2024-01-25 (Thu, 25 Jan 2024)

  Changed paths:
M 
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VisualPropertySheet.java

  Log Message:
  ---
  Renames the Properties button to "More Properties" and changes the tooltips 
-- CYTOSCAPE-13128


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[cytoscape/cytoscape-impl] 8e69e8: - Labels for the property value columns are now ro...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/feature/vizmapper-rotated-labels
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: 8e69e896b1a7b35e52b0f3fd468cf3175ade2013
  
https://github.com/cytoscape/cytoscape-impl/commit/8e69e896b1a7b35e52b0f3fd468cf3175ade2013
  Author: Christian Lopes 
  Date:   2024-01-23 (Tue, 23 Jan 2024)

  Changed paths:
M 
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VisualPropertySheet.java

  Log Message:
  ---
  - Labels for the property value columns are now rotated and no longer 
abbreviated; improved tooltips.
- Renames the Properties button to "Show Properties", makes the standard button 
border visible and moves it to the property name column.
-- CYTOSCAPE-13128


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[cytoscape/cytoscape-impl] 20cf91: Fixes the icons for edge arrows on the VizMapper: ...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/release/3.10.2
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: 20cf9161147fb7d3f69d88a685c9be3df953706e
  
https://github.com/cytoscape/cytoscape-impl/commit/20cf9161147fb7d3f69d88a685c9be3df953706e
  Author: Christian Lopes 
  Date:   2024-01-11 (Thu, 11 Jan 2024)

  Changed paths:
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/icon/ArrowIcon.java
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/icon/VisualPropertyIconFactory.java
M 
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/cellrenderer/IconCellRenderer.java

  Log Message:
  ---
  Fixes the icons for edge arrows on the VizMapper: incorrect proportions
(e.g. CIRCLE, SQUARE), misalignments (HALF_TOP, HALF_BOTTOM), incorrect
edge intersection (ARROWs).


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[cytoscape/cytoscape-impl]

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/bug/edge-arrow-icons
  Home:   https://github.com/cytoscape/cytoscape-impl

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[cytoscape/cytoscape-impl] c30950: Fixes the icons for edge arrows on the VizMapper: ...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: c309504543e37ceb2512f34027cec7d33fe4d100
  
https://github.com/cytoscape/cytoscape-impl/commit/c309504543e37ceb2512f34027cec7d33fe4d100
  Author: Christian Lopes 
  Date:   2024-01-09 (Tue, 09 Jan 2024)

  Changed paths:
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/icon/ArrowIcon.java
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/icon/VisualPropertyIconFactory.java
M 
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/cellrenderer/IconCellRenderer.java

  Log Message:
  ---
  Fixes the icons for edge arrows on the VizMapper: incorrect proportions (e.g. 
CIRCLE, SQUARE), misalignments (HALF_TOP, HALF_BOTTOM), incorrect edge 
intersection (ARROWs).


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[cytoscape/cytoscape-impl] c30950: Fixes the icons for edge arrows on the VizMapper: ...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/bug/edge-arrow-icons
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: c309504543e37ceb2512f34027cec7d33fe4d100
  
https://github.com/cytoscape/cytoscape-impl/commit/c309504543e37ceb2512f34027cec7d33fe4d100
  Author: Christian Lopes 
  Date:   2024-01-09 (Tue, 09 Jan 2024)

  Changed paths:
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/icon/ArrowIcon.java
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/icon/VisualPropertyIconFactory.java
M 
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/cellrenderer/IconCellRenderer.java

  Log Message:
  ---
  Fixes the icons for edge arrows on the VizMapper: incorrect proportions (e.g. 
CIRCLE, SQUARE), misalignments (HALF_TOP, HALF_BOTTOM), incorrect edge 
intersection (ARROWs).


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[cytoscape/cytoscape-impl] c3b29d: The icons for "OPEN" arrow shapes now look differe...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: c3b29dbb6d1edc2bae6ffcdc5a61bb3f46c2e59a
  
https://github.com/cytoscape/cytoscape-impl/commit/c3b29dbb6d1edc2bae6ffcdc5a61bb3f46c2e59a
  Author: Christian Lopes 
  Date:   2024-01-08 (Mon, 08 Jan 2024)

  Changed paths:
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/icon/ArrowIcon.java
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/icon/VisualPropertyIconFactory.java
M 
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/cellrenderer/IconCellRenderer.java

  Log Message:
  ---
  The icons for "OPEN" arrow shapes now look different from their regular 
counterparts -- CYTOSCAPE-13115


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[cytoscape/cytoscape-impl] e3876a: Disposes unregistered networks (that have the SESS...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: e3876ae7446a35e0f079b3746b2a31e1572ed3d0
  
https://github.com/cytoscape/cytoscape-impl/commit/e3876ae7446a35e0f079b3746b2a31e1572ed3d0
  Author: Christian Lopes 
  Date:   2023-11-21 (Tue, 21 Nov 2023)

  Changed paths:
M 
model-impl/impl/src/main/java/org/cytoscape/model/internal/CyNetworkTableManagerImpl.java
M 
session-impl/src/main/java/org/cytoscape/session/internal/CySessionManagerImpl.java

  Log Message:
  ---
  Disposes unregistered networks (that have the SESSION_FILE SavePolicy) when 
closing a session -- CYTOSCAPE-13112


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[cytoscape/cytoscape.js] 19fb17: Fixes COSE TypeError by filtering the edges in the...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/fix/cose-3170
  Home:   https://github.com/cytoscape/cytoscape.js
  Commit: 19fb17857005294b45a49e77dcd45d5981d24edf
  
https://github.com/cytoscape/cytoscape.js/commit/19fb17857005294b45a49e77dcd45d5981d24edf
  Author: Christian Lopes 
  Date:   2023-10-24 (Tue, 24 Oct 2023)

  Changed paths:
M src/extensions/layout/cose.js

  Log Message:
  ---
  Fixes COSE TypeError by filtering the edges in the passed-in options 
(discards any edge that has a connected node not in the passed-in node 
collection) -- #3170


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[cytoscape/cytoscape-impl] 3a3708: Removes the key binding (n) for action for "Show/H...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: 3a3708cf8f03ab9347e0a7ac2cd5816c706d5025
  
https://github.com/cytoscape/cytoscape-impl/commit/3a3708cf8f03ab9347e0a7ac2cd5816c706d5025
  Author: Christian Lopes 
  Date:   2023-07-19 (Wed, 19 Jul 2023)

  Changed paths:
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkViewComparisonPanel.java
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkViewContainer.java

  Log Message:
  ---
  Removes the key binding (n) for action for "Show/Hide Navigator" as well -- 
CYTOSCAPE-13094


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[cytoscape/cytoscape-impl] 1e8ce3: Removes the key bindings for actions: "Show View" ...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/release/3.10.1
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: 1e8ce3af0735f7b994701dfdab089ccfb0d3ffa0
  
https://github.com/cytoscape/cytoscape-impl/commit/1e8ce3af0735f7b994701dfdab089ccfb0d3ffa0
  Author: Christian Lopes 
  Date:   2023-07-10 (Mon, 10 Jul 2023)

  Changed paths:
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/GridViewTogglePanel.java

  Log Message:
  ---
  Removes the key bindings for actions: "Show View" (v) and "Show Grid" (g) -- 
CYTOSCAPE-13094


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[cytoscape/cytoscape-impl] 6493d9: Removes the key bindings for actions: "Show View" ...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: 6493d9c239e89d79d061c29047524aefb1d8d868
  
https://github.com/cytoscape/cytoscape-impl/commit/6493d9c239e89d79d061c29047524aefb1d8d868
  Author: Christian Lopes 
  Date:   2023-07-10 (Mon, 10 Jul 2023)

  Changed paths:
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/GridViewTogglePanel.java

  Log Message:
  ---
  Removes the key bindings for actions: "Show View" (v) and "Show Grid" (g) -- 
CYTOSCAPE-13094


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[cytoscape/cytoscape-impl] 56c000: Minor code cleanup (unused imports).

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: 56c000bcb4e62dceb58c15e2b26a5570c3e3fe92
  
https://github.com/cytoscape/cytoscape-impl/commit/56c000bcb4e62dceb58c15e2b26a5570c3e3fe92
  Author: Christian Lopes 
  Date:   2023-07-04 (Tue, 04 Jul 2023)

  Changed paths:
M app-impl/src/main/java/org/cytoscape/app/internal/manager/BundleApp.java
M 
app-impl/src/main/java/org/cytoscape/app/internal/manager/LaunchManager.java
M 
app-impl/src/main/java/org/cytoscape/app/internal/task/AbstractAppTask.java
M 
app-impl/src/main/java/org/cytoscape/app/internal/task/AppManagerTaskFactory.java
M app-impl/src/main/java/org/cytoscape/app/internal/task/AppStoreTask.java
M 
app-impl/src/main/java/org/cytoscape/app/internal/task/AppStoreTaskFactory.java
M app-impl/src/main/java/org/cytoscape/app/internal/task/ChangeTabTask.java
M 
app-impl/src/main/java/org/cytoscape/app/internal/task/ChangeTabTaskFactory.java
M app-impl/src/main/java/org/cytoscape/app/internal/task/DisableTask.java
M 
app-impl/src/main/java/org/cytoscape/app/internal/task/DisableTaskFactory.java
M app-impl/src/main/java/org/cytoscape/app/internal/task/EnableTask.java
M 
app-impl/src/main/java/org/cytoscape/app/internal/task/EnableTaskFactory.java
M 
app-impl/src/main/java/org/cytoscape/app/internal/task/InformationTask.java
M 
app-impl/src/main/java/org/cytoscape/app/internal/task/InformationTaskFactory.java
M app-impl/src/main/java/org/cytoscape/app/internal/task/InstallTask.java
M 
app-impl/src/main/java/org/cytoscape/app/internal/task/InstallTaskFactory.java
M app-impl/src/main/java/org/cytoscape/app/internal/task/ListAppsTask.java
M 
app-impl/src/main/java/org/cytoscape/app/internal/task/ListAppsTaskFactory.java
M 
app-impl/src/main/java/org/cytoscape/app/internal/task/ListAvailableTask.java
M 
app-impl/src/main/java/org/cytoscape/app/internal/task/ListAvailableTaskFactory.java
M 
app-impl/src/main/java/org/cytoscape/app/internal/task/ListUpdatesTask.java
M 
app-impl/src/main/java/org/cytoscape/app/internal/task/ListUpdatesTaskFactory.java
M 
app-impl/src/main/java/org/cytoscape/app/internal/task/ManagerInstallAppsFromFileTask.java
M 
app-impl/src/main/java/org/cytoscape/app/internal/task/ManagerInstallAppsFromFileTaskFactory.java
M app-impl/src/main/java/org/cytoscape/app/internal/task/StatusTask.java
M 
app-impl/src/main/java/org/cytoscape/app/internal/task/StatusTaskFactory.java
M app-impl/src/main/java/org/cytoscape/app/internal/task/UninstallTask.java
M 
app-impl/src/main/java/org/cytoscape/app/internal/task/UninstallTaskFactory.java
M app-impl/src/main/java/org/cytoscape/app/internal/task/UpdateTask.java
M 
app-impl/src/main/java/org/cytoscape/app/internal/task/UpdateTaskFactory.java
M app-impl/src/main/java/org/cytoscape/app/internal/ui/AppManagerDialog.java

  Log Message:
  ---
  Minor code cleanup (unused imports).


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[cytoscape/cytoscape-impl] 984037: Removes incorrect separators from the main menu --...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/release/3.10.0
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: 9840374cc6cfc31aa06967d9dee9e78d1e4df981
  
https://github.com/cytoscape/cytoscape-impl/commit/9840374cc6cfc31aa06967d9dee9e78d1e4df981
  Author: Christian Lopes 
  Date:   2023-04-19 (Wed, 19 Apr 2023)

  Changed paths:
M core-task-impl/src/main/java/org/cytoscape/task/internal/CyActivator.java

  Log Message:
  ---
  Removes incorrect separators from the main menu -- CYTOSCAPE-13073


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[cytoscape/cytoscape-impl] 94009d: This should prevent multiple sessions from being l...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/release/3.10.0
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: 94009dfbc5a9d7da0b1e2b8d23bea2147f7f4e80
  
https://github.com/cytoscape/cytoscape-impl/commit/94009dfbc5a9d7da0b1e2b8d23bea2147f7f4e80
  Author: Christian Lopes 
  Date:   2023-04-19 (Wed, 19 Apr 2023)

  Changed paths:
M swing-application-impl/src/main/java/org/cytoscape/internal/util/Util.java
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/StarterPanel.java

  Log Message:
  ---
  This should prevent multiple sessions from being loaded when a user clicks a 
session thumbnail repeatedly while the UI is frozen -- CYTOSCAPE-13037


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[cytoscape/cytoscape-impl] bc14be: Removes incorrect separators from the main menu --...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: bc14beaef58607637a2c177f9f24e4393968681a
  
https://github.com/cytoscape/cytoscape-impl/commit/bc14beaef58607637a2c177f9f24e4393968681a
  Author: Christian Lopes 
  Date:   2023-04-19 (Wed, 19 Apr 2023)

  Changed paths:
M core-task-impl/src/main/java/org/cytoscape/task/internal/CyActivator.java

  Log Message:
  ---
  Removes incorrect separators from the main menu -- CYTOSCAPE-13073


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[cytoscape/cytoscape-impl] 2a08fd: This should prevent multiple sessions from being l...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: 2a08fd34f049759895e0393b85d4a28f6ba69ce3
  
https://github.com/cytoscape/cytoscape-impl/commit/2a08fd34f049759895e0393b85d4a28f6ba69ce3
  Author: Christian Lopes 
  Date:   2023-04-19 (Wed, 19 Apr 2023)

  Changed paths:
M swing-application-impl/src/main/java/org/cytoscape/internal/util/Util.java
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/StarterPanel.java

  Log Message:
  ---
  This should prevent multiple sessions from being loaded when a user clicks a 
session thumbnail repeatedly while the UI is frozen -- CYTOSCAPE-13037


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[cytoscape/cytoscape-impl] d2ddb3: Fixes bugs where the mapping's ComboBox flickers i...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: d2ddb305ab05f380592e4c00880bf99ff8478034
  
https://github.com/cytoscape/cytoscape-impl/commit/d2ddb305ab05f380592e4c00880bf99ff8478034
  Author: Christian Lopes 
  Date:   2023-04-17 (Mon, 17 Apr 2023)

  Changed paths:
M 
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VisualPropertySheet.java
M 
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VizMapperMediator.java

  Log Message:
  ---
  Fixes bugs where the mapping's ComboBox flickers in Style panel and visual 
properties disappears -- CYTOSCAPE-13071


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[cytoscape/cytoscape-impl] 483c7c: Rewrite the muti-selection algorithm for the Netwo...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: 483c7c540432993cc5bb34a0a2358094a418e252
  
https://github.com/cytoscape/cytoscape-impl/commit/483c7c540432993cc5bb34a0a2358094a418e252
  Author: Christian Lopes 
  Date:   2023-03-21 (Tue, 21 Mar 2023)

  Changed paths:
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkMainPanel.java
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkViewGrid.java

  Log Message:
  ---
  Rewrite the muti-selection algorithm for the Network List in order to fix a 
issues when using SHIFT/CTRL-Click to select and deselect ranges -- 
CYTOSCAPE-13064


  Commit: 9629d763f2bd8a0be84256a98234e4cdc98d41df
  
https://github.com/cytoscape/cytoscape-impl/commit/9629d763f2bd8a0be84256a98234e4cdc98d41df
  Author: Christian Lopes 
  Date:   2023-03-22 (Wed, 22 Mar 2023)

  Changed paths:
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkMainPanel.java

  Log Message:
  ---
  Fixes new bug that prevents an imported network from being automatically 
selected (and set as current) when added to the list -- CYTOSCAPE-13064


  Commit: 01727f157b7690206ec67253335efef3abad9ce1
  
https://github.com/cytoscape/cytoscape-impl/commit/01727f157b7690206ec67253335efef3abad9ce1
  Author: Christian Lopes 
  Date:   2023-03-23 (Thu, 23 Mar 2023)

  Changed paths:
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkMainPanel.java
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkViewGrid.java

  Log Message:
  ---
  Rewrite the muti-selection algorithm for the View Grid -- CYTOSCAPE-13064


  Commit: 65dcc65cea1b74d96a2183d5530653dfe9b0ae24
  
https://github.com/cytoscape/cytoscape-impl/commit/65dcc65cea1b74d96a2183d5530653dfe9b0ae24
  Author: Christian Lopes 
  Date:   2023-03-23 (Thu, 23 Mar 2023)

  Changed paths:
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkViewGrid.java

  Log Message:
  ---
  Adds ability to use the arrow keys (and SHIFT) to select view thumbnails on 
the View Grid -- CYTOSCAPE-13064


  Commit: d68c4c348b7bcb1f01cd6badcb0271c94e6c1bc1
  
https://github.com/cytoscape/cytoscape-impl/commit/d68c4c348b7bcb1f01cd6badcb0271c94e6c1bc1
  Author: Christian Lopes 
  Date:   2023-03-23 (Thu, 23 Mar 2023)

  Changed paths:
M swing-application-impl/src/main/java/org/cytoscape/internal/util/Util.java
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkSelectionMediator.java
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkViewGrid.java
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkViewMainPanel.java

  Log Message:
  ---
  Code cleanup.


  Commit: 5fbacd3238331ad5f12643db79ce0bf7f00534a6
  
https://github.com/cytoscape/cytoscape-impl/commit/5fbacd3238331ad5f12643db79ce0bf7f00534a6
  Author: Christian Lopes 
  Date:   2023-03-28 (Tue, 28 Mar 2023)

  Changed paths:
M 
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/action/GenerateDiscreteValuesAction.java
M 
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/PropertySheetPanel.java
M 
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VisualPropertySheet.java
M 
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VisualPropertySheetItem.java
M 
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VizMapperMediator.java

  Log Message:
  ---
  Change the implementation of muti-selection for the Visual Property List -- 
CYTOSCAPE-13064


  Commit: ff00a0be64c2fbb5a1d6945be2da1715ed0d5018
  
https://github.com/cytoscape/cytoscape-impl/commit/ff00a0be64c2fbb5a1d6945be2da1715ed0d5018
  Author: Christian Lopes 
  Date:   2023-03-28 (Tue, 28 Mar 2023)

  Changed paths:
M 
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VizMapperMediator.java

  Log Message:
  ---
  Change the implementation of Show/Hide menu options for the new Visual 
Property selection -- CYTOSCAPE-13064


  Commit: 483accd6e5860982bce786a62e2ea7280c7446b2
  
https://github.com/cytoscape/cytoscape-impl/commit/483accd6e5860982bce786a62e2ea7280c7446b2
  Author: Christian Lopes 
  Date:   2023-03-28 (Tue, 28 Mar 2023)

  Changed paths:
M 
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/action/GenerateDiscreteValuesAction.java
M 
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/RemoveVisualMappingsTaskFactory.java
M 
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VisualPropertySheet.java
M 
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VisualPropertySheetItem.java
M 

[cytoscape/cytoscape-impl]

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/fix/net-multi-selection
  Home:   https://github.com/cytoscape/cytoscape-impl

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[cytoscape/cytoscape-impl] ba7e86: Code cleanup only.

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/fix/net-multi-selection
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: ba7e86d2018b4d1ef756d31aa61e7c1b9da00e8b
  
https://github.com/cytoscape/cytoscape-impl/commit/ba7e86d2018b4d1ef756d31aa61e7c1b9da00e8b
  Author: Christian Lopes 
  Date:   2023-03-29 (Wed, 29 Mar 2023)

  Changed paths:
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkMainPanel.java

  Log Message:
  ---
  Code cleanup only.


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[cytoscape/cytoscape-impl] aaa54b: Making sure the added Visual Property is the only ...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/fix/net-multi-selection
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: aaa54be0aa83914f0d0ee030ad44e3d32466ef72
  
https://github.com/cytoscape/cytoscape-impl/commit/aaa54be0aa83914f0d0ee030ad44e3d32466ef72
  Author: Christian Lopes 
  Date:   2023-03-29 (Wed, 29 Mar 2023)

  Changed paths:
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkMainPanel.java
M 
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VisualPropertySheet.java

  Log Message:
  ---
  Making sure the added Visual Property is the only item selected -- 
CYTOSCAPE-13064


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[cytoscape/cytoscape-impl] b83a4a: Fixes another issue when shift-deselecting a secon...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/fix/net-multi-selection
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: b83a4a436ab1c0b29a444564a00ac7425ead45a4
  
https://github.com/cytoscape/cytoscape-impl/commit/b83a4a436ab1c0b29a444564a00ac7425ead45a4
  Author: Christian Lopes 
  Date:   2023-03-29 (Wed, 29 Mar 2023)

  Changed paths:
M 
custom-graphics-internal/src/main/java/org/cytoscape/cg/util/ImageCustomGraphicsSelector.java
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkMainPanel.java
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkViewGrid.java
M 
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VisualPropertySheet.java
M 
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VisualStyleSelector.java

  Log Message:
  ---
  Fixes another issue when shift-deselecting a second non-contiguous selection 
range -- CYTOSCAPE-13064


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[cytoscape/cytoscape-impl] 679779: Fixes a couple of minor issues with the multi-sele...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/fix/net-multi-selection
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: 679779d08b70d8085d9840948f870fe2f0386ce5
  
https://github.com/cytoscape/cytoscape-impl/commit/679779d08b70d8085d9840948f870fe2f0386ce5
  Author: Christian Lopes 
  Date:   2023-03-28 (Tue, 28 Mar 2023)

  Changed paths:
M 
custom-graphics-internal/src/main/java/org/cytoscape/cg/util/ImageCustomGraphicsSelector.java

  Log Message:
  ---
  Fixes a couple of minor issues with the multi-selection logic on the Image 
Selector. -- CYTOSCAPE-13064


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[cytoscape/cytoscape-impl] 1e5ce4: Fixes a couple of minor issues with the multi-sele...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/fix/net-multi-selection
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: 1e5ce4cab60981e4bccb08c97ecb18deb05414c5
  
https://github.com/cytoscape/cytoscape-impl/commit/1e5ce4cab60981e4bccb08c97ecb18deb05414c5
  Author: Christian Lopes 
  Date:   2023-03-28 (Tue, 28 Mar 2023)

  Changed paths:
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkMainPanel.java
M 
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VisualStyleSelector.java

  Log Message:
  ---
  Fixes a couple of minor issues with the multi-selection logic on the 
VisualStyleSelector. Minor code refactoring/cleanup -- CYTOSCAPE-13064


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[cytoscape/cytoscape-impl] 483acc: Code cleanup.

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/fix/net-multi-selection
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: 483accd6e5860982bce786a62e2ea7280c7446b2
  
https://github.com/cytoscape/cytoscape-impl/commit/483accd6e5860982bce786a62e2ea7280c7446b2
  Author: Christian Lopes 
  Date:   2023-03-28 (Tue, 28 Mar 2023)

  Changed paths:
M 
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/action/GenerateDiscreteValuesAction.java
M 
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/RemoveVisualMappingsTaskFactory.java
M 
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VisualPropertySheet.java
M 
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VisualPropertySheetItem.java
M 
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VizMapperMediator.java

  Log Message:
  ---
  Code cleanup.


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[cytoscape/cytoscape-impl] ff00a0: Change the implementation of Show/Hide menu option...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/fix/net-multi-selection
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: ff00a0be64c2fbb5a1d6945be2da1715ed0d5018
  
https://github.com/cytoscape/cytoscape-impl/commit/ff00a0be64c2fbb5a1d6945be2da1715ed0d5018
  Author: Christian Lopes 
  Date:   2023-03-28 (Tue, 28 Mar 2023)

  Changed paths:
M 
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VizMapperMediator.java

  Log Message:
  ---
  Change the implementation of Show/Hide menu options for the new Visual 
Property selection -- CYTOSCAPE-13064


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[cytoscape/cytoscape-impl] 5fbacd: Change the implementation of muti-selection for th...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/fix/net-multi-selection
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: 5fbacd3238331ad5f12643db79ce0bf7f00534a6
  
https://github.com/cytoscape/cytoscape-impl/commit/5fbacd3238331ad5f12643db79ce0bf7f00534a6
  Author: Christian Lopes 
  Date:   2023-03-28 (Tue, 28 Mar 2023)

  Changed paths:
M 
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/action/GenerateDiscreteValuesAction.java
M 
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/PropertySheetPanel.java
M 
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VisualPropertySheet.java
M 
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VisualPropertySheetItem.java
M 
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VizMapperMediator.java

  Log Message:
  ---
  Change the implementation of muti-selection for the Visual Property List -- 
CYTOSCAPE-13064


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[cytoscape/cytoscape-impl] d68c4c: Code cleanup.

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/fix/net-multi-selection
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: d68c4c348b7bcb1f01cd6badcb0271c94e6c1bc1
  
https://github.com/cytoscape/cytoscape-impl/commit/d68c4c348b7bcb1f01cd6badcb0271c94e6c1bc1
  Author: Christian Lopes 
  Date:   2023-03-23 (Thu, 23 Mar 2023)

  Changed paths:
M swing-application-impl/src/main/java/org/cytoscape/internal/util/Util.java
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkSelectionMediator.java
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkViewGrid.java
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkViewMainPanel.java

  Log Message:
  ---
  Code cleanup.


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[cytoscape/cytoscape-impl] 65dcc6: Adds ability to use the arrow keys (and SHIFT) to ...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/fix/net-multi-selection
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: 65dcc65cea1b74d96a2183d5530653dfe9b0ae24
  
https://github.com/cytoscape/cytoscape-impl/commit/65dcc65cea1b74d96a2183d5530653dfe9b0ae24
  Author: Christian Lopes 
  Date:   2023-03-23 (Thu, 23 Mar 2023)

  Changed paths:
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkViewGrid.java

  Log Message:
  ---
  Adds ability to use the arrow keys (and SHIFT) to select view thumbnails on 
the View Grid -- CYTOSCAPE-13064


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[cytoscape/cytoscape-impl] 01727f: Rewrite the muti-selection algorithm for the View ...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/fix/net-multi-selection
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: 01727f157b7690206ec67253335efef3abad9ce1
  
https://github.com/cytoscape/cytoscape-impl/commit/01727f157b7690206ec67253335efef3abad9ce1
  Author: Christian Lopes 
  Date:   2023-03-23 (Thu, 23 Mar 2023)

  Changed paths:
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkMainPanel.java
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkViewGrid.java

  Log Message:
  ---
  Rewrite the muti-selection algorithm for the View Grid -- CYTOSCAPE-13064


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[cytoscape/cytoscape-impl] 9629d7: Fixes new bug that prevents an imported network fr...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/fix/net-multi-selection
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: 9629d763f2bd8a0be84256a98234e4cdc98d41df
  
https://github.com/cytoscape/cytoscape-impl/commit/9629d763f2bd8a0be84256a98234e4cdc98d41df
  Author: Christian Lopes 
  Date:   2023-03-22 (Wed, 22 Mar 2023)

  Changed paths:
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkMainPanel.java

  Log Message:
  ---
  Fixes new bug that prevents an imported network from being automatically 
selected (and set as current) when added to the list -- CYTOSCAPE-13064


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[cytoscape/cytoscape-impl] 483c7c: Rewrite the muti-selection algorithm for the Netwo...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/fix/net-multi-selection
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: 483c7c540432993cc5bb34a0a2358094a418e252
  
https://github.com/cytoscape/cytoscape-impl/commit/483c7c540432993cc5bb34a0a2358094a418e252
  Author: Christian Lopes 
  Date:   2023-03-21 (Tue, 21 Mar 2023)

  Changed paths:
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkMainPanel.java
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkViewGrid.java

  Log Message:
  ---
  Rewrite the muti-selection algorithm for the Network List in order to fix a 
issues when using SHIFT/CTRL-Click to select and deselect ranges -- 
CYTOSCAPE-13064


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[cytoscape/cytoscape-impl] 1f2fc0: Copy the new selection features from ImageCustomGr...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: 1f2fc0b2c40fdafb93c7668cd5b2f7d546db0e3b
  
https://github.com/cytoscape/cytoscape-impl/commit/1f2fc0b2c40fdafb93c7668cd5b2f7d546db0e3b
  Author: Christian Lopes 
  Date:   2023-03-07 (Tue, 07 Mar 2023)

  Changed paths:
M 
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VisualStyleSelector.java

  Log Message:
  ---
  Copy the new selection features from ImageCustomGraphicsSelector to 
VisualStyleSelector (SHIFT/CTRL + arrow keys, better selection model).


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[cytoscape/cytoscape-impl]

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/feature/network-sort
  Home:   https://github.com/cytoscape/cytoscape-impl

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[cytoscape/cytoscape-impl] 9b0f44: Adds menu item "Sort Networks by Name" to Network ...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: 9b0f44f9f38dcf82f2ab340928e89b980b0f2403
  
https://github.com/cytoscape/cytoscape-impl/commit/9b0f44f9f38dcf82f2ab340928e89b980b0f2403
  Author: Christian Lopes 
  Date:   2023-02-28 (Tue, 28 Feb 2023)

  Changed paths:
M 
swing-application-impl/src/main/java/org/cytoscape/internal/SessionHandler.java
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkMainPanel.java
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/RootNetworkPanel.java
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/SubNetworkPanel.java
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/util/ViewUtil.java

  Log Message:
  ---
  Adds menu item "Sort Networks by Name" to Network tab's "Options" menu -- 
CYTOSCAPE-13052


  Commit: 5d982bde9f7568f7ad44c9715164cf43bd45df5e
  
https://github.com/cytoscape/cytoscape-impl/commit/5d982bde9f7568f7ad44c9715164cf43bd45df5e
  Author: Christian Lopes 
  Date:   2023-02-28 (Tue, 28 Feb 2023)

  Changed paths:
M 
swing-application-impl/src/main/java/org/cytoscape/internal/SessionHandler.java
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/AbstractNetworkPanel.java
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/AbstractNetworkPanelModel.java
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkMainPanel.java
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/util/ViewUtil.java

  Log Message:
  ---
  Minor code cleanup.


  Commit: 5db4fd5055ae4785e1b3a448586c040c6150048b
  
https://github.com/cytoscape/cytoscape-impl/commit/5db4fd5055ae4785e1b3a448586c040c6150048b
  Author: Christian Lopes 
  Date:   2023-03-01 (Wed, 01 Mar 2023)

  Changed paths:
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkMainPanel.java

  Log Message:
  ---
  Code cleanup only: just removes unused instance fields.


  Commit: d80eda0f52090c82f4fc4d2287964c4f10f468fd
  
https://github.com/cytoscape/cytoscape-impl/commit/d80eda0f52090c82f4fc4d2287964c4f10f468fd
  Author: Christian Lopes 
  Date:   2023-03-01 (Wed, 01 Mar 2023)

  Changed paths:
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkMainPanel.java
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkMediator.java
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/util/ViewUtil.java

  Log Message:
  ---
  Apply the alphabetical sort again after adding a new network or renaming an 
existing one  -- CYTOSCAPE-13052


  Commit: 4b8cf0f573b5238f454f912e207cdd1f422a7f90
  
https://github.com/cytoscape/cytoscape-impl/commit/4b8cf0f573b5238f454f912e207cdd1f422a7f90
  Author: Christian Lopes 
  Date:   2023-03-02 (Thu, 02 Mar 2023)

  Changed paths:
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkMainPanel.java
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/RootNetworkPanel.java

  Log Message:
  ---
  Fixes bug where selecting multiple view thumbnails (Grid view) with 
SHIFT-Click selects the incorrect range on the grid  -- CYTOSCAPE-13052


  Commit: e5c63cba3789e57ac3745cbd38f9721f71eab59c
  
https://github.com/cytoscape/cytoscape-impl/commit/e5c63cba3789e57ac3745cbd38f9721f71eab59c
  Author: Christian Lopes 
  Date:   2023-03-02 (Thu, 02 Mar 2023)

  Changed paths:
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkMainPanel.java

  Log Message:
  ---
  Fixes NPE when getting the index of a network -- CYTOSCAPE-13052


Compare: 
https://github.com/cytoscape/cytoscape-impl/compare/9a8b17dbf15d...e5c63cba3789

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[cytoscape/cytoscape-impl] e5c63c: Fixes NPE when getting the index of a network -- C...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/feature/network-sort
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: e5c63cba3789e57ac3745cbd38f9721f71eab59c
  
https://github.com/cytoscape/cytoscape-impl/commit/e5c63cba3789e57ac3745cbd38f9721f71eab59c
  Author: Christian Lopes 
  Date:   2023-03-02 (Thu, 02 Mar 2023)

  Changed paths:
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkMainPanel.java

  Log Message:
  ---
  Fixes NPE when getting the index of a network -- CYTOSCAPE-13052


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[cytoscape/cytoscape-impl] 4b8cf0: Fixes bug where selecting multiple view thumbnails...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/feature/network-sort
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: 4b8cf0f573b5238f454f912e207cdd1f422a7f90
  
https://github.com/cytoscape/cytoscape-impl/commit/4b8cf0f573b5238f454f912e207cdd1f422a7f90
  Author: Christian Lopes 
  Date:   2023-03-02 (Thu, 02 Mar 2023)

  Changed paths:
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkMainPanel.java
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/RootNetworkPanel.java

  Log Message:
  ---
  Fixes bug where selecting multiple view thumbnails (Grid view) with 
SHIFT-Click selects the incorrect range on the grid  -- CYTOSCAPE-13052


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[cytoscape/cytoscape-impl] d80eda: Apply the alphabetical sort again after adding a n...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/feature/network-sort
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: d80eda0f52090c82f4fc4d2287964c4f10f468fd
  
https://github.com/cytoscape/cytoscape-impl/commit/d80eda0f52090c82f4fc4d2287964c4f10f468fd
  Author: Christian Lopes 
  Date:   2023-03-01 (Wed, 01 Mar 2023)

  Changed paths:
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkMainPanel.java
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkMediator.java
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/util/ViewUtil.java

  Log Message:
  ---
  Apply the alphabetical sort again after adding a new network or renaming an 
existing one  -- CYTOSCAPE-13052


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[cytoscape/cytoscape-impl] 5db4fd: Code cleanup only: just removes unused instance fi...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/feature/network-sort
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: 5db4fd5055ae4785e1b3a448586c040c6150048b
  
https://github.com/cytoscape/cytoscape-impl/commit/5db4fd5055ae4785e1b3a448586c040c6150048b
  Author: Christian Lopes 
  Date:   2023-03-01 (Wed, 01 Mar 2023)

  Changed paths:
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkMainPanel.java

  Log Message:
  ---
  Code cleanup only: just removes unused instance fields.


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[cytoscape/cytoscape-impl] 5d982b: Minor code cleanup.

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/feature/network-sort
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: 5d982bde9f7568f7ad44c9715164cf43bd45df5e
  
https://github.com/cytoscape/cytoscape-impl/commit/5d982bde9f7568f7ad44c9715164cf43bd45df5e
  Author: Christian Lopes 
  Date:   2023-02-28 (Tue, 28 Feb 2023)

  Changed paths:
M 
swing-application-impl/src/main/java/org/cytoscape/internal/SessionHandler.java
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/AbstractNetworkPanel.java
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/AbstractNetworkPanelModel.java
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkMainPanel.java
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/util/ViewUtil.java

  Log Message:
  ---
  Minor code cleanup.


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[cytoscape/cytoscape-impl] 9b0f44: Adds menu item "Sort Networks by Name" to Network ...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/feature/network-sort
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: 9b0f44f9f38dcf82f2ab340928e89b980b0f2403
  
https://github.com/cytoscape/cytoscape-impl/commit/9b0f44f9f38dcf82f2ab340928e89b980b0f2403
  Author: Christian Lopes 
  Date:   2023-02-28 (Tue, 28 Feb 2023)

  Changed paths:
M 
swing-application-impl/src/main/java/org/cytoscape/internal/SessionHandler.java
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkMainPanel.java
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/RootNetworkPanel.java
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/SubNetworkPanel.java
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/util/ViewUtil.java

  Log Message:
  ---
  Adds menu item "Sort Networks by Name" to Network tab's "Options" menu -- 
CYTOSCAPE-13052


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[cytoscape/cytoscape-impl] c8cd71: Adds missing code to the Task used by commands whe...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: c8cd71ce9962c97c38ae447456e904c6add7a3ab
  
https://github.com/cytoscape/cytoscape-impl/commit/c8cd71ce9962c97c38ae447456e904c6add7a3ab
  Author: Christian Lopes 
  Date:   2023-02-22 (Wed, 22 Feb 2023)

  Changed paths:
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/tasks/UpdateAnnotationTask.java

  Log Message:
  ---
  Adds missing code to the Task used by commands when changing an annotation's 
canvas (it's necessary to fire the "annotationsReordered" event) -- 
CYTOSCAPE-13048


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[cytoscape/cytoscape-impl] 17e8a3: Missing comment -- CYTOSCAPE-13047

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: 17e8a380d812b734ce44d6395b0d649b5b8a7dd0
  
https://github.com/cytoscape/cytoscape-impl/commit/17e8a380d812b734ce44d6395b0d649b5b8a7dd0
  Author: Christian Lopes 
  Date:   2023-02-22 (Wed, 22 Feb 2023)

  Changed paths:
M 
io-impl/impl/src/main/java/org/cytoscape/io/internal/read/gml/GMLFileFilter.java

  Log Message:
  ---
  Missing comment -- CYTOSCAPE-13047


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[cytoscape/cytoscape-impl] 4a8300: Fixes the Logger's name and minor code refactoring...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: 4a8300cc3f96d31cb04822bdaa3b265a4e8db8e3
  
https://github.com/cytoscape/cytoscape-impl/commit/4a8300cc3f96d31cb04822bdaa3b265a4e8db8e3
  Author: Christian Lopes 
  Date:   2023-02-22 (Wed, 22 Feb 2023)

  Changed paths:
M 
io-impl/impl/src/main/java/org/cytoscape/io/internal/read/gml/GMLFileFilter.java
M 
io-impl/impl/src/main/java/org/cytoscape/io/internal/read/gml/GMLParser.java

  Log Message:
  ---
  Fixes the Logger's name and minor code refactoring/reformatting.


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[cytoscape/cytoscape-impl] 770973: GMLFileFilter now ignores files with Excel extensi...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: 770973168df6d291f1e20a0fd5708a7b7d690f13
  
https://github.com/cytoscape/cytoscape-impl/commit/770973168df6d291f1e20a0fd5708a7b7d690f13
  Author: Christian Lopes 
  Date:   2023-02-22 (Wed, 22 Feb 2023)

  Changed paths:
M 
io-impl/impl/src/main/java/org/cytoscape/io/internal/read/gml/GMLFileFilter.java

  Log Message:
  ---
  GMLFileFilter now ignores files with Excel extensions (xls, xlsx) to prevent 
java.nio.charset.MalformedInputException -- CYTOSCAPE-13047


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[cytoscape/cytoscape-impl] 5c473a: Adds missing content types for .xlsx files to the ...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: 5c473ab487fac2ad4bd2107ae9b5ec734546d536
  
https://github.com/cytoscape/cytoscape-impl/commit/5c473ab487fac2ad4bd2107ae9b5ec734546d536
  Author: Christian Lopes 
  Date:   2023-02-22 (Wed, 22 Feb 2023)

  Changed paths:
M 
table-import-impl/src/main/java/org/cytoscape/tableimport/internal/CyActivator.java

  Log Message:
  ---
  Adds missing content types for .xlsx files to the NETWORK/Excel FileFilter -- 
CYTOSCAPE-13047


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[cytoscape/cytoscape-impl] 193b6a: Minor code refactoring/cleanup.

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: 193b6a6046a7d30cc7384b15c6cdb6b601ab7599
  
https://github.com/cytoscape/cytoscape-impl/commit/193b6a6046a7d30cc7384b15c6cdb6b601ab7599
  Author: Christian Lopes 
  Date:   2023-02-20 (Mon, 20 Feb 2023)

  Changed paths:
M io-impl/impl/src/main/java/org/cytoscape/io/internal/CyActivator.java
M 
io-impl/impl/src/main/java/org/cytoscape/io/internal/read/session/AbstractSessionReader.java
M 
io-impl/impl/src/main/java/org/cytoscape/io/internal/read/session/Cy3SessionReaderImpl.java
M 
io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/GenericXGMMLFileFilter.java
M 
io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/GenericXGMMLReader.java
M 
io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/SessionXGMMLNetworkFileFilter.java
M 
io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/SessionXGMMLNetworkViewFileFilter.java
M 
io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleGraphDone.java
M 
io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/handler/ReadDataManager.java
M 
model-impl/impl/src/main/java/org/cytoscape/model/internal/CyTableManagerImpl.java
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/StarterPanel.java

  Log Message:
  ---
  Minor code refactoring/cleanup.


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[cytoscape/cytoscape-impl] eb20a1: Adds a synchronized block to CyTableManagerImpl.ge...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: eb20a18232131e01debc60a7e836fe66b7ca7a10
  
https://github.com/cytoscape/cytoscape-impl/commit/eb20a18232131e01debc60a7e836fe66b7ca7a10
  Author: Christian Lopes 
  Date:   2023-02-20 (Mon, 20 Feb 2023)

  Changed paths:
M 
model-impl/impl/src/main/java/org/cytoscape/model/internal/CyTableManagerImpl.java

  Log Message:
  ---
  Adds a synchronized block to CyTableManagerImpl.getGlobalTables() to prevent 
ConcurrentModificationExceptions -- CYTOSCAPE-13037


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[cytoscape/cytoscape-impl] 49a8ad: A session thumbnail is now focused as soon as the ...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: 49a8ad993c4df8ecda4ed84e863ab0b12998c708
  
https://github.com/cytoscape/cytoscape-impl/commit/49a8ad993c4df8ecda4ed84e863ab0b12998c708
  Author: Christian Lopes 
  Date:   2023-02-20 (Mon, 20 Feb 2023)

  Changed paths:
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/StarterPanel.java

  Log Message:
  ---
  A session thumbnail is now focused as soon as the cursor is over it, in order 
to make it easier for the user to click it (it should reduce the chance of a 
user clicking a thumbnail multiple times) -- CYTOSCAPE-13037


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[cytoscape/cytoscape-impl] 9695ca: It now tries to prevent another click to a session...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: 9695ca80b94234c8eddcd7615c9ef8783a9ba0ad
  
https://github.com/cytoscape/cytoscape-impl/commit/9695ca80b94234c8eddcd7615c9ef8783a9ba0ad
  Author: Christian Lopes 
  Date:   2023-02-20 (Mon, 20 Feb 2023)

  Changed paths:
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeDesktop.java
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/StarterPanel.java

  Log Message:
  ---
  It now tries to prevent another click to a session thumbnail while a session 
is already being loaded -- CYTOSCAPE-13037


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[cytoscape/cytoscape-impl] a19dec: Moves the flag 'readingSessionFile' from SessionUt...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: a19decc5e84f3e980755d6d4bec865d7f2ebd615
  
https://github.com/cytoscape/cytoscape-impl/commit/a19decc5e84f3e980755d6d4bec865d7f2ebd615
  Author: Christian Lopes 
  Date:   2023-02-20 (Mon, 20 Feb 2023)

  Changed paths:
M io-impl/impl/src/main/java/org/cytoscape/io/internal/CyActivator.java
M 
io-impl/impl/src/main/java/org/cytoscape/io/internal/read/session/AbstractSessionReader.java
M 
io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/GenericXGMMLFileFilter.java
M 
io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/GenericXGMMLReader.java
M 
io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/SessionXGMMLFileFilter.java
M 
io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/SessionXGMMLNetworkFileFilter.java
M 
io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/SessionXGMMLNetworkViewFileFilter.java
M 
io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/handler/ReadDataManager.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/util/ReadCache.java
M 
io-impl/impl/src/main/java/org/cytoscape/io/internal/util/session/SessionUtil.java
M 
io-impl/impl/src/test/java/org/cytoscape/io/internal/read/xgmml/GenericXGMMLFileFilterTest.java
M 
io-impl/impl/src/test/java/org/cytoscape/io/internal/read/xgmml/GenericXGMMLReaderTest.java

  Log Message:
  ---
  Moves the flag 'readingSessionFile' from SessionUtil to the ReadCache class 
so it's no longer static, and adds synchronization blocks to ReadCache to try 
to avoid potential race conditions -- CYTOSCAPE-13037


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[cytoscape/cytoscape-impl] 23f2e1: Catches the IllegalArgumentException thrown by the...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: 23f2e1451df371fd805a49b7809fca77eb94e709
  
https://github.com/cytoscape/cytoscape-impl/commit/23f2e1451df371fd805a49b7809fca77eb94e709
  Author: Christian Lopes 
  Date:   2023-02-16 (Thu, 16 Feb 2023)

  Changed paths:
M 
session-impl/src/main/java/org/cytoscape/session/internal/CySessionManagerImpl.java

  Log Message:
  ---
  Catches the IllegalArgumentException thrown by the NetworkManager when the 
network is not registered -- CYTOSCAPE-13037


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[cytoscape/cytoscape-impl] ec5c06: Minor code refactoring/cleanup.

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: ec5c06309b5420d27c29dae8a80117a6d74157f2
  
https://github.com/cytoscape/cytoscape-impl/commit/ec5c06309b5420d27c29dae8a80117a6d74157f2
  Author: Christian Lopes 
  Date:   2023-02-15 (Wed, 15 Feb 2023)

  Changed paths:
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkMediator.java
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/RootNetworkPanel.java
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/SubNetworkPanel.java

  Log Message:
  ---
  Minor code refactoring/cleanup.


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[cytoscape/cytoscape-impl] 9fa26a: Listens to RowSetEvents for column "__parentNetwor...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: 9fa26a56ca26806a484ae6ebd5417ecd455f5c01
  
https://github.com/cytoscape/cytoscape-impl/commit/9fa26a56ca26806a484ae6ebd5417ecd455f5c01
  Author: Christian Lopes 
  Date:   2023-02-15 (Wed, 15 Feb 2023)

  Changed paths:
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkMediator.java
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/RootNetworkPanel.java
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/SubNetworkPanel.java

  Log Message:
  ---
  Listens to RowSetEvents for column "__parentNetwork.SUID" in order to update 
the hierarchy indentation (e.g. after subnetworks are destroyed) -- 
CYTOSCAPE-13043


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[cytoscape/cytoscape-api] b7094d: Minor code cleanup and reformatting.

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-api
  Commit: b7094d56aafb4976da808c7632efa9dd7e3df52b
  
https://github.com/cytoscape/cytoscape-api/commit/b7094d56aafb4976da808c7632efa9dd7e3df52b
  Author: Christian Lopes 
  Date:   2023-02-14 (Tue, 14 Feb 2023)

  Changed paths:
M 
swing-application-api/src/main/java/org/cytoscape/application/swing/ActionEnableSupport.java

  Log Message:
  ---
  Minor code cleanup and reformatting.


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[cytoscape/cytoscape-impl] 13f216: Minor code refactoring/cleanup.

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: 13f2165de10c807a28aa31309de84942375d64fa
  
https://github.com/cytoscape/cytoscape-impl/commit/13f2165de10c807a28aa31309de84942375d64fa
  Author: Christian Lopes 
  Date:   2023-02-14 (Tue, 14 Feb 2023)

  Changed paths:
M 
core-task-impl/src/main/java/org/cytoscape/task/internal/network/DestroyNetworkTask.java
M 
model-impl/impl/src/main/java/org/cytoscape/model/internal/CyNetworkManagerImpl.java
M 
swing-application-impl/src/main/java/org/cytoscape/internal/actions/DestroyNetworksAction.java

  Log Message:
  ---
  Minor code refactoring/cleanup.


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[cytoscape/cytoscape-impl] 0c42d8: The DestroyNetworkTask now makes sure the network ...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: 0c42d859e40e532bc77c4c68c2cee3a697387923
  
https://github.com/cytoscape/cytoscape-impl/commit/0c42d859e40e532bc77c4c68c2cee3a697387923
  Author: Christian Lopes 
  Date:   2023-02-14 (Tue, 14 Feb 2023)

  Changed paths:
M 
core-task-impl/src/main/java/org/cytoscape/task/internal/network/DestroyNetworkTask.java
M 
core-task-impl/src/test/java/org/cytoscape/task/internal/network/DestroyNetworkTaskTest.java

  Log Message:
  ---
  The DestroyNetworkTask now makes sure the network is removed from the 
CyApplicationManager.currentNetwork state before being destroyed -- 
CYTOSCAPE-13044


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[cytoscape/cytoscape-api] 3998e0: Fixes NPE that happened when ActionEnableSupport t...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-api
  Commit: 3998e09c6ad84a9c94ef101ef3bff22a91e35a4e
  
https://github.com/cytoscape/cytoscape-api/commit/3998e09c6ad84a9c94ef101ef3bff22a91e35a4e
  Author: Christian Lopes 
  Date:   2023-02-14 (Tue, 14 Feb 2023)

  Changed paths:
M 
swing-application-api/src/main/java/org/cytoscape/application/swing/ActionEnableSupport.java

  Log Message:
  ---
  Fixes NPE that happened when ActionEnableSupport tried to use a NODE/EDGE 
Table that no longer exists because the current network is being disposed -- 
CYTOSCAPE-13044


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[cytoscape/cytoscape-impl] 0d679e: Minor code refactoring/cleanup.

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: 0d679e55ca267eb8949ef005f5510387ec3764ad
  
https://github.com/cytoscape/cytoscape-impl/commit/0d679e55ca267eb8949ef005f5510387ec3764ad
  Author: Christian Lopes 
  Date:   2023-02-14 (Tue, 14 Feb 2023)

  Changed paths:
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkMainPanel.java
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/SubNetworkPanel.java

  Log Message:
  ---
  Minor code refactoring/cleanup.


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[cytoscape/cytoscape-impl] 0a0eb9: Forces a layout "revalidate" on the Subnetwork Pan...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: 0a0eb94ef5159037eb22358fdaa6cf0e02358cd6
  
https://github.com/cytoscape/cytoscape-impl/commit/0a0eb94ef5159037eb22358fdaa6cf0e02358cd6
  Author: Christian Lopes 
  Date:   2023-02-14 (Tue, 14 Feb 2023)

  Changed paths:
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/SubNetworkPanel.java

  Log Message:
  ---
  Forces a layout "revalidate" on the Subnetwork Panels so they show the 
correct indentation -- CYTOSCAPE-13043


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[cytoscape/cytoscape-impl] 651aeb: Removes the confirmation dialog for Node Chart/Gra...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: 651aebae9d1e19a477c219526f2134c3eebdd89d
  
https://github.com/cytoscape/cytoscape-impl/commit/651aebae9d1e19a477c219526f2134c3eebdd89d
  Author: Christian Lopes 
  Date:   2023-02-10 (Fri, 10 Feb 2023)

  Changed paths:
M 
custom-graphics-internal/src/main/java/org/cytoscape/cg/internal/charts/ColorSchemeEditor.java
M 
custom-graphics-internal/src/main/java/org/cytoscape/cg/internal/gradient/AbstractGradientEditor.java
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/utils/MultipleGradientEditor.java
M 
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/editor/mappingeditor/GradientEditorPanel.java

  Log Message:
  ---
  Removes the confirmation dialog for Node Chart/Gradient and Annotation 
Gradient (a new Palette only affects the colors, not the other settings like 
Continuous Mapping colors) -- CYTOSCAPE-13042


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[cytoscape/cytoscape-api] 8ede6a: Updates the ColorButton component and the CyColorP...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-api
  Commit: 8ede6a4e0f2718a709771043d17e066ed4302b1d
  
https://github.com/cytoscape/cytoscape-api/commit/8ede6a4e0f2718a709771043d17e066ed4302b1d
  Author: Christian Lopes 
  Date:   2023-02-10 (Fri, 10 Feb 2023)

  Changed paths:
M swing-util-api/src/main/java/org/cytoscape/util/swing/ColorButton.java
M 
swing-util-api/src/main/java/org/cytoscape/util/swing/CyColorPaletteChooser.java

  Log Message:
  ---
  Updates the ColorButton component and the CyColorPaletteChooser javadoc -- 
CYTOSCAPE-13042


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[cytoscape/cytoscape-impl] 5bcdbd: CyColorPaletteChooserImpl.showDialog methods now r...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: 5bcdbd54cc402371f85daa14506d0f289264551e
  
https://github.com/cytoscape/cytoscape-impl/commit/5bcdbd54cc402371f85daa14506d0f289264551e
  Author: Christian Lopes 
  Date:   2023-02-10 (Fri, 10 Feb 2023)

  Changed paths:
M 
swing-util-impl/src/main/java/org/cytoscape/util/swing/internal/CyColorPaletteChooserImpl.java

  Log Message:
  ---
  CyColorPaletteChooserImpl.showDialog methods now return null when cancelled 
(instead of the initial palette/color) -- CYTOSCAPE-13042


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[cytoscape/cytoscape-impl] cf86a4: Fixes NPE that happened when ungrouping annotation...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: cf86a4c08ea446f7b47ae172a6eea73beb4c2606
  
https://github.com/cytoscape/cytoscape-impl/commit/cf86a4c08ea446f7b47ae172a6eea73beb4c2606
  Author: Christian Lopes 
  Date:   2023-02-08 (Wed, 08 Feb 2023)

  Changed paths:
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/annotations/AnnotationSelection.java

  Log Message:
  ---
  Fixes NPE that happened when ungrouping annotations -- CYTOSCAPE-13041


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[cytoscape/cytoscape-impl] e55ff8: - Limits the max number of initial palette colors ...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: e55ff89f75cc32805f468643d464c33231125265
  
https://github.com/cytoscape/cytoscape-impl/commit/e55ff89f75cc32805f468643d464c33231125265
  Author: Christian Lopes 
  Date:   2023-02-08 (Wed, 08 Feb 2023)

  Changed paths:
M 
custom-graphics-internal/src/main/java/org/cytoscape/cg/internal/charts/ColorSchemeEditor.java
M 
custom-graphics-internal/src/main/java/org/cytoscape/cg/internal/gradient/AbstractGradientEditor.java
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/utils/MultipleGradientEditor.java

  Log Message:
  ---
  - Limits the max number of initial palette colors to 12 for Node Charts.
- Adds confirmation dialog when applying another palette to Node Charts.
- Minor refactoring.


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[cytoscape/cytoscape-impl] 0d1231: Code refactoring/cleanup and minor UI tweaks.

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: 0d1231f42f32dcab5254ae824a5e9849bbeca920
  
https://github.com/cytoscape/cytoscape-impl/commit/0d1231f42f32dcab5254ae824a5e9849bbeca920
  Author: Christian Lopes 
  Date:   2023-02-07 (Tue, 07 Feb 2023)

  Changed paths:
M 
custom-graphics-internal/src/main/java/org/cytoscape/cg/internal/util/AnglePicker.java
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/utils/AnglePicker.java
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/utils/GradientEditor.java
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/utils/MultipleGradientEditor.java
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/utils/PointPicker.java
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/utils/ViewUtils.java
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/internal/util/MathUtil.java
M 
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/editor/mappingeditor/ContinuousMappingEditorPanel.java

  Log Message:
  ---
  Code refactoring/cleanup and minor UI tweaks.


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[cytoscape/cytoscape-impl] 073d0d: Adds "Palette" button to Graphics' Gradient editor...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: 073d0d27b3c8c3bbf5c62551982abc5aab4696e7
  
https://github.com/cytoscape/cytoscape-impl/commit/073d0d27b3c8c3bbf5c62551982abc5aab4696e7
  Author: Christian Lopes 
  Date:   2023-02-07 (Tue, 07 Feb 2023)

  Changed paths:
M 
custom-graphics-internal/src/main/java/org/cytoscape/cg/internal/gradient/AbstractGradientEditor.java
M 
custom-graphics-internal/src/main/java/org/cytoscape/cg/internal/gradient/linear/LinearGradientEditor.java
M 
custom-graphics-internal/src/main/java/org/cytoscape/cg/internal/gradient/radial/RadialGradientEditor.java
A 
custom-graphics-internal/src/main/java/org/cytoscape/cg/internal/util/AnglePicker.java
R 
custom-graphics-internal/src/main/java/org/cytoscape/cg/internal/util/ControlPoint.java
M 
custom-graphics-internal/src/main/java/org/cytoscape/cg/internal/util/GradientEditor.java
M 
custom-graphics-internal/src/main/java/org/cytoscape/cg/internal/util/MathUtil.java
M 
custom-graphics-internal/src/main/java/org/cytoscape/cg/internal/util/PointPicker.java
M 
custom-graphics-internal/src/main/java/org/cytoscape/cg/internal/util/ViewUtil.java

  Log Message:
  ---
  Adds "Palette" button to Graphics' Gradient editor and improves the the whole 
UI -- CYTOSCAPE-13039


  Commit: 18cf54c09ecf0c8019a9bc857de1a80fed0d6a3a
  
https://github.com/cytoscape/cytoscape-impl/commit/18cf54c09ecf0c8019a9bc857de1a80fed0d6a3a
  Author: Christian Lopes 
  Date:   2023-02-07 (Tue, 07 Feb 2023)

  Changed paths:
M 
edge-bundler-impl/src/main/java/org/cytoscape/edge/bundler/internal/EdgeBundlerRunner.java
M 
edge-bundler-impl/src/main/java/org/cytoscape/edge/bundler/internal/EdgeBundlerTask.java
A 
edge-bundler-impl/src/main/java/org/cytoscape/edge/bundler/internal/EdgeCompatabilityRunner.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/CyActivator.java
R 
io-impl/impl/src/main/java/org/cytoscape/io/internal/read/nnf/NNFNetworkReader.java
R 
io-impl/impl/src/main/java/org/cytoscape/io/internal/read/nnf/NNFNetworkReaderFactory.java
R 
io-impl/impl/src/main/java/org/cytoscape/io/internal/read/nnf/NNFParser.java
R 
io-impl/impl/src/main/java/org/cytoscape/io/internal/write/nnf/NnfNetworkWriterFactory.java
R 
io-impl/impl/src/main/java/org/cytoscape/io/internal/write/nnf/NnfWriter.java

  Log Message:
  ---
  Merge branch 'develop' of github.com:cytoscape/cytoscape-impl into develop


Compare: 
https://github.com/cytoscape/cytoscape-impl/compare/c14599061d77...18cf54c09ecf

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[cytoscape/cytoscape-impl] 45a85e: Fixes issue where the Edit (color) button is not u...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: 45a85eda6fe54b83fafa6225d972b514ff545a89
  
https://github.com/cytoscape/cytoscape-impl/commit/45a85eda6fe54b83fafa6225d972b514ff545a89
  Author: Christian Lopes 
  Date:   2023-02-03 (Fri, 03 Feb 2023)

  Changed paths:
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/utils/GradientEditor.java

  Log Message:
  ---
  Fixes issue where the Edit (color) button is not updated when another palette 
is applied -- CYTOSCAPE-12596


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[cytoscape/cytoscape-impl] fcf131: - Fixes issue where the color of the Edit (color) ...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: fcf131356be5c7fda37396a9b3a6c04f894598ad
  
https://github.com/cytoscape/cytoscape-impl/commit/fcf131356be5c7fda37396a9b3a6c04f894598ad
  Author: Christian Lopes 
  Date:   2023-02-03 (Fri, 03 Feb 2023)

  Changed paths:
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/utils/AnglePicker.java
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/utils/GradientEditor.java
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/utils/MultipleGradientEditor.java
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/internal/util/MathUtil.java

  Log Message:
  ---
  - Fixes issue where the color of the Edit (color) button is not updated if 
the color is changed by double-clicking a gradient marker.
- Press SHIFT while dragging a gradient marker to snap to the closest main 
position/fraction (0.1, 0.2, 0.3, ...0.9).
- Minor UI changes and code refactoring.
 -- CYTOSCAPE-12596


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[cytoscape/cytoscape-impl] 40550b: Fixes glitch on Windows when painting the AnglePic...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: 40550ba2ec8c8c23e24e61ff77e9bc49f93f2e9f
  
https://github.com/cytoscape/cytoscape-impl/commit/40550ba2ec8c8c23e24e61ff77e9bc49f93f2e9f
  Author: Christian Lopes 
  Date:   2023-02-02 (Thu, 02 Feb 2023)

  Changed paths:
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/dialogs/ShapeAnnotationEditor.java
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/utils/AnglePicker.java
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/utils/MultipleGradientEditor.java

  Log Message:
  ---
  Fixes glitch on Windows when painting the AnglePicker (had to extend JPanel 
instead of JComponent); better dimensions and spacing on Nimbus and Win -- 
CYTOSCAPE-12596


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[cytoscape/cytoscape-impl] 6ba39b: Allows AnglePicker points to be selected continuou...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: 6ba39bf43f046577f30b46c89e3ceb4a133d3b64
  
https://github.com/cytoscape/cytoscape-impl/commit/6ba39bf43f046577f30b46c89e3ceb4a133d3b64
  Author: Christian Lopes 
  Date:   2023-02-02 (Thu, 02 Feb 2023)

  Changed paths:
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/utils/AnglePicker.java

  Log Message:
  ---
  Allows AnglePicker points to be selected continuously while dragging the 
mouse and other visual improvements -- CYTOSCAPE-12596


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[cytoscape/cytoscape-impl] 0d18f9: - Gets the selected angle (from AnglePicker) in co...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: 0d18f9841455e881817353262ea532d53d4b7c11
  
https://github.com/cytoscape/cytoscape-impl/commit/0d18f9841455e881817353262ea532d53d4b7c11
  Author: Christian Lopes 
  Date:   2023-02-02 (Thu, 02 Feb 2023)

  Changed paths:
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/utils/AnglePicker.java
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/utils/MultipleGradientEditor.java

  Log Message:
  ---
  - Gets the selected angle (from AnglePicker) in counterclockwise orientation 
to match the gradient axis.
- Fix inicial value of the Angle combobox.
-- CYTOSCAPE-12596


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[cytoscape/cytoscape-impl] fa1e60: Fixes '-0' angle and make it an integer (does not ...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: fa1e605a4055c1829981e1d9eb16869678eb7a1c
  
https://github.com/cytoscape/cytoscape-impl/commit/fa1e605a4055c1829981e1d9eb16869678eb7a1c
  Author: Christian Lopes 
  Date:   2023-02-02 (Thu, 02 Feb 2023)

  Changed paths:
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/utils/AnglePicker.java
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/utils/MultipleGradientEditor.java
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/internal/util/MathUtil.java

  Log Message:
  ---
  Fixes '-0' angle and make it an integer (does not need to be more precise 
than that) -- CYTOSCAPE-12596


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[cytoscape/cytoscape-impl] 9819ab: Replaces the LinearGradient Editor's preview panel...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: 9819ab90ee3944c3c2ac97879eba793070d7ef42
  
https://github.com/cytoscape/cytoscape-impl/commit/9819ab90ee3944c3c2ac97879eba793070d7ef42
  Author: Christian Lopes 
  Date:   2023-02-02 (Thu, 02 Feb 2023)

  Changed paths:
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/dialogs/ShapeAnnotationEditor.java
A 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/utils/AnglePicker.java
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/utils/GradientEditor.java
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/utils/MultipleGradientEditor.java
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/internal/util/MathUtil.java

  Log Message:
  ---
  Replaces the LinearGradient Editor's preview panel with an AnglePicker 
component (press SHIFT to snap to the closest main angle) -- CYTOSCAPE-12596


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[cytoscape/cytoscape-impl] 83a94f: Adds a preview panel to the LinearGradientPaint ed...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: 83a94f84e6776e5619cae9f9dbb90ca992f074f0
  
https://github.com/cytoscape/cytoscape-impl/commit/83a94f84e6776e5619cae9f9dbb90ca992f074f0
  Author: Christian Lopes 
  Date:   2023-02-01 (Wed, 01 Feb 2023)

  Changed paths:
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/utils/MultipleGradientEditor.java

  Log Message:
  ---
  Adds a preview panel to the LinearGradientPaint editor -- CYTOSCAPE-12596


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[cytoscape/cytoscape-impl] 5925ad: Hides new suggested Table Import feature (copy/pas...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: 5925adee2f8234d1fc7aa5993a135cc0fbb9c9df
  
https://github.com/cytoscape/cytoscape-impl/commit/5925adee2f8234d1fc7aa5993a135cc0fbb9c9df
  Author: Christian Lopes 
  Date:   2023-02-01 (Wed, 01 Feb 2023)

  Changed paths:
M 
table-import-impl/src/main/java/org/cytoscape/tableimport/internal/ui/AttributeEditorPanel.java
M 
table-import-impl/src/main/java/org/cytoscape/tableimport/internal/ui/PreviewTablePanel.java

  Log Message:
  ---
  Hides new suggested Table Import feature (copy/paste column settings) for 
later.


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[cytoscape/cytoscape-impl] 60c4cc: Adds key binding that allows a gradient point to b...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: 60c4cc679817d02131d3405c11ab4c2ad07ef885
  
https://github.com/cytoscape/cytoscape-impl/commit/60c4cc679817d02131d3405c11ab4c2ad07ef885
  Author: Christian Lopes 
  Date:   2023-02-01 (Wed, 01 Feb 2023)

  Changed paths:
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/utils/GradientEditor.java

  Log Message:
  ---
  Adds key binding that allows a gradient point to be removed by pressing 
DELETE or BACKSPACE -- CYTOSCAPE-12596


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[cytoscape/cytoscape-impl] 9b790e: Fixes bug where the ShapeAnnotation editor (e.g. G...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: 9b790e4146bb4397b2874a15f2df6935afc691da
  
https://github.com/cytoscape/cytoscape-impl/commit/9b790e4146bb4397b2874a15f2df6935afc691da
  Author: Christian Lopes 
  Date:   2023-02-01 (Wed, 01 Feb 2023)

  Changed paths:
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/ui/AnnotationMainPanel.java

  Log Message:
  ---
  Fixes bug where the ShapeAnnotation editor (e.g. GradientPaint button) would 
not be updated after opening the same session again and selecting the same 
annotation -- CYTOSCAPE-12596


  Commit: a876311876f510040fb573fe1c9b301e7d02d53c
  
https://github.com/cytoscape/cytoscape-impl/commit/a876311876f510040fb573fe1c9b301e7d02d53c
  Author: Christian Lopes 
  Date:   2023-02-01 (Wed, 01 Feb 2023)

  Changed paths:
M 
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VizMapPropertyBuilder.java

  Log Message:
  ---
  Merge branch 'develop' of github.com:cytoscape/cytoscape-impl into develop


Compare: 
https://github.com/cytoscape/cytoscape-impl/compare/6071b5c508cb...a876311876f5

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[cytoscape/cytoscape-impl] f88dcc: Minor refactoring and javadoc changes.

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: f88dccc248e6ab1680118abe5a78b05fe4e5b8ee
  
https://github.com/cytoscape/cytoscape-impl/commit/f88dccc248e6ab1680118abe5a78b05fe4e5b8ee
  Author: Christian Lopes 
  Date:   2023-02-01 (Wed, 01 Feb 2023)

  Changed paths:
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/utils/GradientEditor.java
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/utils/MultipleGradientEditor.java
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/utils/PointPicker.java
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/internal/util/MathUtil.java

  Log Message:
  ---
  Minor refactoring and javadoc changes.


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[cytoscape/cytoscape-impl] f2e561: - Removes preset negative angles from the LinearGr...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: f2e5619167bc06e558c47e147542809b38767388
  
https://github.com/cytoscape/cytoscape-impl/commit/f2e5619167bc06e558c47e147542809b38767388
  Author: Christian Lopes 
  Date:   2023-02-01 (Wed, 01 Feb 2023)

  Changed paths:
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/utils/MultipleGradientEditor.java

  Log Message:
  ---
  - Removes preset negative angles from the LinearGradientPaint editor (they 
are redundant) -- CYTOSCAPE-12596


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[cytoscape/cytoscape-impl] fbee35: - Fixes applying and getting the angle of LinearGr...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: fbee35d874b8be20198f118d5e74251ef2dc75d6
  
https://github.com/cytoscape/cytoscape-impl/commit/fbee35d874b8be20198f118d5e74251ef2dc75d6
  Author: Christian Lopes 
  Date:   2023-02-01 (Wed, 01 Feb 2023)

  Changed paths:
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/dialogs/ShapeAnnotationEditor.java
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/internal/util/MathUtil.java
A 
ding-impl/ding-presentation-impl/src/test/java/org/cytoscape/ding/internal/util/MathUtilTest.java

  Log Message:
  ---
  - Fixes applying and getting the angle of LinearGradientPaints -- 
CYTOSCAPE-12596


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[cytoscape/cytoscape-impl] 4079cf: - Improves UI and usability, including the renderi...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: 4079cfbec92838fbc8f47adabee8a91b6188a0cc
  
https://github.com/cytoscape/cytoscape-impl/commit/4079cfbec92838fbc8f47adabee8a91b6188a0cc
  Author: Christian Lopes 
  Date:   2023-01-31 (Tue, 31 Jan 2023)

  Changed paths:
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/dialogs/ShapeAnnotationEditor.java
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/utils/GradientEditor.java
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/utils/MultipleGradientEditor.java
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/utils/PointPicker.java
M 
swing-application-impl/src/main/java/org/cytoscape/internal/CyActivator.java

  Log Message:
  ---
  - Improves UI and usability, including the rendering and behaviour of the 
color markers (specially when they overlap).
- Adds "Reset" button to PointPicker (Radial central point).
- Fixes IllegalArgumentException when creating MultipleGradientPaint with 
duplicate fractions.
 -- CYTOSCAPE-12596


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[cytoscape/cytoscape-impl] 68753b: No longer opens the "add" dialog automatically whe...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: 68753b15a1207d944eb2062286a4d2e91503982f
  
https://github.com/cytoscape/cytoscape-impl/commit/68753b15a1207d944eb2062286a4d2e91503982f
  Author: Christian Lopes 
  Date:   2023-01-30 (Mon, 30 Jan 2023)

  Changed paths:
M 
custom-graphics-internal/src/main/java/org/cytoscape/cg/internal/editor/CyCustomGraphicsValueEditor.java

  Log Message:
  ---
  No longer opens the "add" dialog automatically when opening the Image 
Selector to set a Node Image visual property -- CYTOSCAPE-12932


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[cytoscape/cytoscape-impl] c163aa: Adds "Palette" and "Reverse Colors" buttons -- CYT...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: c163aae781b760c21097a263444ea0b8ae6e6c00
  
https://github.com/cytoscape/cytoscape-impl/commit/c163aae781b760c21097a263444ea0b8ae6e6c00
  Author: Christian Lopes 
  Date:   2023-01-27 (Fri, 27 Jan 2023)

  Changed paths:
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/dialogs/ShapeAnnotationEditor.java
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/utils/GradientEditor.java
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/utils/MultipleGradientEditor.java
M 
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/editor/mappingeditor/GradientEditorPanel.java

  Log Message:
  ---
  Adds "Palette" and "Reverse Colors" buttons -- CYTOSCAPE-12596


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[cytoscape/cytoscape-impl] c1e885: Adds a gradient editor (Linear/Radial) to Shape an...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: c1e8852e574ac2e1a53d53bd5191cda66bc4b16c
  
https://github.com/cytoscape/cytoscape-impl/commit/c1e8852e574ac2e1a53d53bd5191cda66bc4b16c
  Author: Christian Lopes 
  Date:   2023-01-26 (Thu, 26 Jan 2023)

  Changed paths:
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/annotations/ArrowAnnotationImpl.java
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/annotations/BoundedTextAnnotationImpl.java
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/annotations/ShapeAnnotationImpl.java
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/annotations/TextAnnotationImpl.java
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/dialogs/ShapeAnnotationEditor.java
A 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/utils/DoubleInputVerifier.java
A 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/utils/GradientEditor.java
A 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/utils/MultipleGradientEditor.java
A 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/utils/PointPicker.java
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/utils/ViewUtils.java
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/internal/util/MathUtil.java
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkMainPanel.java

  Log Message:
  ---
  Adds a gradient editor (Linear/Radial) to Shape annotations (includes 
BoundedText annotations) -- CYTOSCAPE-12596


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[cytoscape/cytoscape-impl] d26bb4: - Fixes SHIFT-Click and CONTROL-Click to select mu...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: d26bb45f9484bbb5387b3f59b8bbdd25cffccb0c
  
https://github.com/cytoscape/cytoscape-impl/commit/d26bb45f9484bbb5387b3f59b8bbdd25cffccb0c
  Author: Christian Lopes 
  Date:   2023-01-24 (Tue, 24 Jan 2023)

  Changed paths:
M 
custom-graphics-internal/src/main/java/org/cytoscape/cg/util/ImageCustomGraphicsSelector.java

  Log Message:
  ---
  - Fixes SHIFT-Click and CONTROL-Click to select multiple images (edit mode) 
and image selection through the keyboard arrows.
- The image focus highlighting makes more sense now, too.
-- CYTOSCAPE-12932


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[cytoscape/cytoscape-impl] 7ddbd8: Shows "duplicate image" message and disables the "...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: 7ddbd87a531a50284c310f2c18d70e6807bd0fea
  
https://github.com/cytoscape/cytoscape-impl/commit/7ddbd87a531a50284c310f2c18d70e6807bd0fea
  Author: Christian Lopes 
  Date:   2023-01-23 (Mon, 23 Jan 2023)

  Changed paths:
M 
custom-graphics-internal/src/main/java/org/cytoscape/cg/util/LoadImageDialog.java
M 
custom-graphics-internal/src/main/java/org/cytoscape/cg/util/URLImportPanel.java

  Log Message:
  ---
  Shows "duplicate image" message and disables the "OK" button when duplicate 
or when no file selected -- CYTOSCAPE-12932 , CYTOSCAPE-12900


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[cytoscape/cytoscape-impl] 5b2510: Better handling of the default image name when imp...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: 5b2510d9ddac99dcdc90c23caadfec51523da477
  
https://github.com/cytoscape/cytoscape-impl/commit/5b2510d9ddac99dcdc90c23caadfec51523da477
  Author: Christian Lopes 
  Date:   2023-01-23 (Mon, 23 Jan 2023)

  Changed paths:
M 
custom-graphics-internal/src/main/java/org/cytoscape/cg/internal/editor/CyCustomGraphicsCellRenderer.java
M 
custom-graphics-internal/src/main/java/org/cytoscape/cg/internal/image/AbstractURLImageCustomGraphicsFactory.java
M 
custom-graphics-internal/src/main/java/org/cytoscape/cg/internal/image/BitmapCustomGraphicsFactory.java
M 
custom-graphics-internal/src/main/java/org/cytoscape/cg/internal/image/SVGCustomGraphicsFactory.java
M 
custom-graphics-internal/src/main/java/org/cytoscape/cg/internal/util/ImageUtil.java
M 
custom-graphics-internal/src/main/java/org/cytoscape/cg/internal/util/ViewUtil.java
M 
custom-graphics-internal/src/main/java/org/cytoscape/cg/model/AbstractURLImageCustomGraphics.java
M 
custom-graphics-internal/src/main/java/org/cytoscape/cg/model/BitmapCustomGraphics.java
R 
custom-graphics-internal/src/main/java/org/cytoscape/cg/model/CustomGraphicsUtil.java
M 
custom-graphics-internal/src/main/java/org/cytoscape/cg/model/SVGCustomGraphics.java
A 
custom-graphics-internal/src/main/java/org/cytoscape/cg/util/CustomGraphicsUtil.java
M 
custom-graphics-internal/src/main/java/org/cytoscape/cg/util/ImageCustomGraphicsSelector.java
M 
custom-graphics-internal/src/main/java/org/cytoscape/cg/util/URLImportPanel.java

  Log Message:
  ---
  Better handling of the default image name when importing a new bitmap/svg 
file and some refactoring -- CYTOSCAPE-12932


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[cytoscape/cytoscape-impl] c3f2f0: Fixes issue where you could not change the caret p...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: c3f2f01729c51fd1f02b542d9033217e31cc0f7f
  
https://github.com/cytoscape/cytoscape-impl/commit/c3f2f01729c51fd1f02b542d9033217e31cc0f7f
  Author: Christian Lopes 
  Date:   2023-01-23 (Mon, 23 Jan 2023)

  Changed paths:
M 
custom-graphics-internal/src/main/java/org/cytoscape/cg/util/ImageCustomGraphicsSelector.java
M 
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VisualStyleSelector.java

  Log Message:
  ---
  Fixes issue where you could not change the caret position of the image name 
by clicking on the text field, and commit an edited image name when clicking on 
another item's text field (does the same on the VisualStyleSelector) -- 
CYTOSCAPE-12932


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[cytoscape/cytoscape-impl] 3f1f02: Oops! Renames the correct image dialog now -- CYTO...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: 3f1f02f0eafe076d645dadaee88e1add90cba6b4
  
https://github.com/cytoscape/cytoscape-impl/commit/3f1f02f0eafe076d645dadaee88e1add90cba6b4
  Author: Christian Lopes 
  Date:   2023-01-18 (Wed, 18 Jan 2023)

  Changed paths:
M 
custom-graphics-internal/src/main/java/org/cytoscape/cg/util/LoadImageDialog.java
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/dialogs/LoadImageDialog.java

  Log Message:
  ---
  Oops! Renames the correct image dialog now -- CYTOSCAPE-12932 , 
CYTOSCAPE-12900


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[cytoscape/cytoscape-impl] a65c89: Dialog title renamed from "Select an Image" to "Ad...

['Christian Lopes' via cytoscape-cvs]

  Branch: refs/heads/develop
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: a65c89412b6690c19db7384c10b2320b98fbc7b6
  
https://github.com/cytoscape/cytoscape-impl/commit/a65c89412b6690c19db7384c10b2320b98fbc7b6
  Author: Christian Lopes 
  Date:   2023-01-18 (Wed, 18 Jan 2023)

  Changed paths:
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/dialogs/LoadImageDialog.java

  Log Message:
  ---
  Dialog title renamed from "Select an Image" to "Add Images" -- 
CYTOSCAPE-12932 , CYTOSCAPE-12900


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