Re: [Bioc-devel] cliqueMS request for undeprecation as all errors have been fixed
The package continues to fail. Please fix the package before we will un-deprecate. Cheers, Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 From: Bioc-devel on behalf of Oriol Senan Campos Sent: Friday, April 26, 2024 2:54 AM To: bioc-devel@r-project.org Subject: [Bioc-devel] cliqueMS request for undeprecation as all errors have been fixed Dear Bioconductor Core Team, I am the maintainer of cliqueMS. The package was flagged to deprecation but I have been able to fix the error that was causing the failure in the checks. I just had to remove a dependency that is no longer on CRAN and replace for a package available there. After checks and passing all the test I could find another dependency that does a similar calculation. I already pushed to Bioc devel (3.18 I cannot make any more commits). So please remove cliqueMS from the list of deprecated packages for 3.19. Tomorrow we will see a new build and I expect all OS and hosts to pass. Kind Regards, Oriol Senan ___ Bioc-devel@r-project.org mailing list https://secure-web.cisco.com/1taAut2o3iDuK52Je9MCqXex5Vl6gtqnxxDxVmIjLExY7xbmI2S7H-6IMQ16sEROqqxGn3aGbN9PCDxqefwdWYinmXIpxV4RlIe6BO0R8WUaTqICzugSPy0huSsBCumTJbob1f54dDrlu1AzybdiNm8cMeyWMgPGiRvh7TQTD2Q6YBVGRQmYE3it1RBmpkNck-nRdoiiSmN8hy5efVrEDi94NHKsdPU8JAMP7nLZDQUybJDbLuj2Yk9m9qb1ZCgaH4qlTlzErYLk5e7P_tD34OgnDzCcghX6N88710ndFV_aIvKKfsF3sEPyggewTub7T/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
Re: [Bioc-devel] cliqueMS request for undeprecation as all errors have been fixed
We will un-deprecate once the package is building and checking cleanly. We will look at today's build report when it is posted. Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 From: Bioc-devel on behalf of Oriol Senan Campos Sent: Friday, April 26, 2024 2:54 AM To: bioc-devel@r-project.org Subject: [Bioc-devel] cliqueMS request for undeprecation as all errors have been fixed Dear Bioconductor Core Team, I am the maintainer of cliqueMS. The package was flagged to deprecation but I have been able to fix the error that was causing the failure in the checks. I just had to remove a dependency that is no longer on CRAN and replace for a package available there. After checks and passing all the test I could find another dependency that does a similar calculation. I already pushed to Bioc devel (3.18 I cannot make any more commits). So please remove cliqueMS from the list of deprecated packages for 3.19. Tomorrow we will see a new build and I expect all OS and hosts to pass. Kind Regards, Oriol Senan ___ Bioc-devel@r-project.org mailing list https://secure-web.cisco.com/1taAut2o3iDuK52Je9MCqXex5Vl6gtqnxxDxVmIjLExY7xbmI2S7H-6IMQ16sEROqqxGn3aGbN9PCDxqefwdWYinmXIpxV4RlIe6BO0R8WUaTqICzugSPy0huSsBCumTJbob1f54dDrlu1AzybdiNm8cMeyWMgPGiRvh7TQTD2Q6YBVGRQmYE3it1RBmpkNck-nRdoiiSmN8hy5efVrEDi94NHKsdPU8JAMP7nLZDQUybJDbLuj2Yk9m9qb1ZCgaH4qlTlzErYLk5e7P_tD34OgnDzCcghX6N88710ndFV_aIvKKfsF3sEPyggewTub7T/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
[Bioc-devel] cliqueMS request for undeprecation as all errors have been fixed
Dear Bioconductor Core Team, I am the maintainer of cliqueMS. The package was flagged to deprecation but I have been able to fix the error that was causing the failure in the checks. I just had to remove a dependency that is no longer on CRAN and replace for a package available there. After checks and passing all the test I could find another dependency that does a similar calculation. I already pushed to Bioc devel (3.18 I cannot make any more commits). So please remove cliqueMS from the list of deprecated packages for 3.19. Tomorrow we will see a new build and I expect all OS and hosts to pass. Kind Regards, Oriol Senan ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
