[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: d70779d5 by Andreas Tille at 2024-02-21T01:43:22+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Tue, 20 Feb 2024 13:42:04 + +Last-Update: Wed, 21 Feb 2024 01:42:04 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Tue, 20 Feb 2024 13:42:08 + +Last-Update: Wed, 21 Feb 2024 01:42:04 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Tue, 20 Feb 2024 13:42:10 + +Last-Update: Wed, 21 Feb 2024 01:42:05 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/d70779d540fc95a0167dfc3e39e659f9fe61f008 -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/d70779d540fc95a0167dfc3e39e659f9fe61f008 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/last-align] Pushed new tag upstream/1542
Charles Plessy pushed new tag upstream/1542 at Debian Med / last-align -- View it on GitLab: https://salsa.debian.org/med-team/last-align/-/tree/upstream/1542 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/last-align] Pushed new tag debian/1542-1
Charles Plessy pushed new tag debian/1542-1 at Debian Med / last-align -- View it on GitLab: https://salsa.debian.org/med-team/last-align/-/tree/debian/1542-1 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/last-align][pristine-tar] pristine-tar data for last-align_1542.orig.tar.xz
Charles Plessy pushed to branch pristine-tar at Debian Med / last-align Commits: 04c79abe by Charles Plessy at 2024-02-21T08:04:49+09:00 pristine-tar data for last-align_1542.orig.tar.xz - - - - - 2 changed files: - + last-align_1542.orig.tar.xz.delta - + last-align_1542.orig.tar.xz.id Changes: = last-align_1542.orig.tar.xz.delta = Binary files /dev/null and b/last-align_1542.orig.tar.xz.delta differ = last-align_1542.orig.tar.xz.id = @@ -0,0 +1 @@ +92f67034a189f7979d6735210869dc56d99bbaa2 View it on GitLab: https://salsa.debian.org/med-team/last-align/-/commit/04c79abee84ce913d7ca49e4e52aec4482683639 -- View it on GitLab: https://salsa.debian.org/med-team/last-align/-/commit/04c79abee84ce913d7ca49e4e52aec4482683639 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/htslib] Pushed new tag debian/1.19+ds-1+exp1
Étienne Mollier pushed new tag debian/1.19+ds-1+exp1 at Debian Med / htslib -- View it on GitLab: https://salsa.debian.org/med-team/htslib/-/tree/debian/1.19+ds-1+exp1 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/htslib][debian/experimental] d/libhts3t64.lintian-overrides: soname mismatch.
Étienne Mollier pushed to branch debian/experimental at Debian Med / htslib Commits: 2b798dc3 by Étienne Mollier at 2024-02-20T20:27:59+01:00 d/libhts3t64.lintian-overrides: soname mismatch. The mismatch is introduced by the 64-time time_t migration, and the change of package name from libhts3 to libhts3t64, while the file name of the library itself remains untouched. This commit restores a hunk that went missing when porting the initial debdiff to htslib 1.19. Gbp-Dch: ignore - - - - - 1 changed file: - + debian/libhts3t64.lintian-overrides Changes: = debian/libhts3t64.lintian-overrides = @@ -0,0 +1 @@ +libhts3t64: package-name-doesnt-match-sonames libhts3 View it on GitLab: https://salsa.debian.org/med-team/htslib/-/commit/2b798dc3e98caf6732eb6dc262c35fa5fc468aa6 -- View it on GitLab: https://salsa.debian.org/med-team/htslib/-/commit/2b798dc3e98caf6732eb6dc262c35fa5fc468aa6 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/pbsv][master] No plan to release source
Andreas Tille pushed to branch master at Debian Med / pbsv Commits: 2763ae7e by Andreas Tille at 2024-02-20T14:44:37+01:00 No plan to release source - - - - - 1 changed file: - debian/changelog Changes: = debian/changelog = @@ -2,5 +2,8 @@ pbsv (2.9.0-1) UNRELEASED; urgency=medium * Initial release (Closes: #) TODO: Find the real source code of pbsv which is not part of the repository + According to + https://github.com/PacificBiosciences/pbbioconda/issues/653#issuecomment-1954192710 + there is no plan to release the source code -- Andreas Tille Wed, 12 Jul 2023 10:21:29 +0200 View it on GitLab: https://salsa.debian.org/med-team/pbsv/-/commit/2763ae7e0ca99620846d8ed05b7cb5e1800f6ce3 -- View it on GitLab: https://salsa.debian.org/med-team/pbsv/-/commit/2763ae7e0ca99620846d8ed05b7cb5e1800f6ce3 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/libgzstream][master] 4 commits: routine-update: Packaging update
Lance Lin pushed to branch master at Debian Med / libgzstream
Commits:
3273dea8 by Lance Lin at 2024-02-19T22:02:55+07:00
routine-update: Packaging update
- - - - -
dfd4b196 by Lance Lin at 2024-02-19T22:03:17+07:00
routine-update: Standards-Version: 4.6.2
- - - - -
41b93113 by Lance Lin at 2024-02-20T19:42:15+07:00
d/rules: Copy gzstream.h back to original location (Closes: #1049635)
- - - - -
a1469d3f by Lance Lin at 2024-02-20T19:50:58+07:00
d/patches: Update hardening.patch to include missing CXXFLAGS for blhc
- - - - -
4 changed files:
- debian/changelog
- debian/control
- debian/patches/hardening.patch
- debian/rules
Changes:
=
debian/changelog
=
@@ -1,3 +1,12 @@
+libgzstream (1.5+git20171107.9a20658-2) UNRELEASED; urgency=medium
+
+ * Team upload.
+ * Standards-Version: 4.6.2 (routine-update)
+ * d/rules: Copy gzstream.h back to original location (Closes: #1049635)
+ * d/patches: Update hardening.patch to include missing CXXFLAGS for blhc
+
+ -- Lance Lin Mon, 19 Feb 2024 22:01:17 +0700
+
libgzstream (1.5+git20171107.9a20658-1) unstable; urgency=medium
* Watchfile using mode=git
=
debian/control
=
@@ -6,7 +6,7 @@ Priority: optional
Build-Depends: debhelper-compat (= 13),
d-shlibs,
zlib1g-dev
-Standards-Version: 4.6.0
+Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/libgzstream
Vcs-Git: https://salsa.debian.org/med-team/libgzstream.git
Homepage: https://www.cs.unc.edu/Research/compgeom/gzstream/
=
debian/patches/hardening.patch
=
@@ -4,18 +4,19 @@ Description: Propagate hardening options
--- a/Makefile
+++ b/Makefile
-@@ -37,8 +37,8 @@ SOVERSION=0
+@@ -37,8 +37,9 @@
# CXX = CC -n32 -LANG:std # for SGI Irix 6.5, MIPSpro CC version 7.30
CXX = g++ # for Linux RedHat 6.1, g++ version 2.95.2
-CPPFLAGS = -I. -O
-LDFLAGS = -L. -lgzstream -lz
++CXXFLAGS+= -g -O2 -fstack-protector-strong -Wformat -Werror=format-security
+CPPFLAGS+= -I. -O
+LDFLAGS += -L. -lgzstream -lz
AR = ar cr
#
-@@ -68,13 +68,13 @@ install: libgzstream.a test
+@@ -68,19 +69,19 @@
# *** O.K. Installation finished successfully. ***
gzstream.o : gzstream.C gzstream.h
@@ -32,3 +33,10 @@ Description: Propagate hardening options
libgzstream.a : gzstream.o
${AR} libgzstream.a gzstream.o
+
+ libgzstream.so : gzstream.C gzstream.h
+- ${CXX} ${CPPFLAGS} -fPIC -c -o gzstream.o gzstream.C
++ ${CXX} ${CPPFLAGS} ${CXXFLAGS} -fPIC -c -o gzstream.o gzstream.C
+ ${CXX} ${LDFLAGS} -shared -Wl,-soname,$@.$(SOVERSION) -o
$@.$(SOVERSION) gzstream.o
+ ln -s $@.$(SOVERSION) $@
+
=
debian/rules
=
@@ -33,6 +33,7 @@ override_dh_install:
--exclude-la \
--movedev *.h usr/include \
debian/tmplibs/*.so
+ cp debian/libgzstream-dev/usr/include/gzstream.h gzstream.h
get-orig-source:
wget -O ../gzstream.tgz
http://www.cs.unc.edu/Research/compgeom/gzstream/gzstream.tgz
View it on GitLab:
https://salsa.debian.org/med-team/libgzstream/-/compare/33f34591577ff2472960138f874620dce7422390...a1469d3f83e03c0abf62f2bcebf309183d78b930
--
View it on GitLab:
https://salsa.debian.org/med-team/libgzstream/-/compare/33f34591577ff2472960138f874620dce7422390...a1469d3f83e03c0abf62f2bcebf309183d78b930
You're receiving this email because of your account on salsa.debian.org.
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