Bug#994405: libgmp10:i386: buffer overflow due to integer overflow in mpz/inp_raw.c on 32-bit machines

[Anton Gladky]

Thanks, Vincent, for the information. I would still wait for CVE,
so we can apply a patch and track vulnerability for other
Debian versions (stable/oldstable/o-o-stable etc.).

Regards

Anton


Am Fr., 17. Sept. 2021 um 01:17 Uhr schrieb Vincent Lefevre <
vinc...@vinc17.net>:

> On 2021-09-16 21:23:34 +0200, Anton Gladky wrote:
> > Thanks for the bug report. We will fix it when CVE (if any) will be
> > assigned and upstream patch will be available.
>
> FYI, an upstream patch is now available here:
>
>   https://gmplib.org/list-archives/gmp-bugs/2021-September/005087.html
>
> > Though, the integer overflows are not making the package unusable in
> > most cases.
>
> Yes, but they may introduce security issues, in particular here
> because the behavior depends on data from a file, which may be
> untrusted. That said, here it is probably wise to check that the
> size is not too large in order to prevent the address space from
> being exhausted.
>
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Bug#994312: marked as done (mpi4py: Removal of the python3-*-dbg packages in sid/bookworm)

[Debian Bug Tracking System]

Your message dated Fri, 17 Sep 2021 01:53:49 +
with message-id 
and subject line Bug#994312: fixed in mpi4py 3.1.1-7
has caused the Debian Bug report #994312,
regarding mpi4py: Removal of the python3-*-dbg packages in sid/bookworm
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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--- Begin Message ---
Package: src:mpi4py
Version: 3.0.3-10
Severity: serious
Tags: sid bookworm
User: debian-pyt...@lists.debian.org
Usertags: pydbg-removal

Python 3.8 upstream now has a common ABI for normal and debug
extension builds, so we can drop the python3-*-dbg packages.
Details at
https://lists.debian.org/debian-python/2021/09/msg4.html

Stop building the python3-*-dbg package, but be careful
that all the reverse dependencies are also removed.

Please check for dependencies, build dependencies AND autopkg tests.
If help is needed, please ask on IRC #debian-python,
or the debian-pyt...@lists.debian.org mailing list.
--- End Message ---
--- Begin Message ---
Source: mpi4py
Source-Version: 3.1.1-7
Done: Drew Parsons 

We believe that the bug you reported is fixed in the latest version of
mpi4py, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 994...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Drew Parsons  (supplier of updated mpi4py package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


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Date: Fri, 17 Sep 2021 02:55:02 +0200
Source: mpi4py
Architecture: source
Version: 3.1.1-7
Distribution: experimental
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Drew Parsons 
Closes: 994312
Changes:
 mpi4py (3.1.1-7) experimental; urgency=medium
 .
   * Team upload.
   * stop providing python3-mpi4py-dbg. Python debug builds are now
 ABI compatible with standard builds. Closes: #994312.
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mpi4py_3.1.1-7_source.changes ACCEPTED into experimental

[Debian FTP Masters]

Accepted:

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Date: Fri, 17 Sep 2021 02:55:02 +0200
Source: mpi4py
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Distribution: experimental
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Drew Parsons 
Closes: 994312
Changes:
 mpi4py (3.1.1-7) experimental; urgency=medium
 .
   * Team upload.
   * stop providing python3-mpi4py-dbg. Python debug builds are now
 ABI compatible with standard builds. Closes: #994312.
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Processing of mpi4py_3.1.1-7_source.changes

[Debian FTP Masters]

mpi4py_3.1.1-7_source.changes uploaded successfully to localhost
along with the files:
  mpi4py_3.1.1-7.dsc
  mpi4py_3.1.1-7.debian.tar.xz

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Processed: Bug#994312 marked as pending in mpi4py

[Debian Bug Tracking System]

Processing control commands:

> tag -1 pending
Bug #994312 [src:mpi4py] mpi4py: Removal of the python3-*-dbg packages in 
sid/bookworm
Added tag(s) pending.

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Bug#994405: libgmp10:i386: buffer overflow due to integer overflow in mpz/inp_raw.c on 32-bit machines

[Vincent Lefevre]

On 2021-09-16 21:23:34 +0200, Anton Gladky wrote:
> Thanks for the bug report. We will fix it when CVE (if any) will be
> assigned and upstream patch will be available.

FYI, an upstream patch is now available here:

  https://gmplib.org/list-archives/gmp-bugs/2021-September/005087.html

> Though, the integer overflows are not making the package unusable in
> most cases.

Yes, but they may introduce security issues, in particular here
because the behavior depends on data from a file, which may be
untrusted. That said, here it is probably wise to check that the
size is not too large in order to prevent the address space from
being exhausted.

-- 
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Work: CR INRIA - computer arithmetic / AriC project (LIP, ENS-Lyon)

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macaulay2_1.18+ds-3_source.changes ACCEPTED into unstable

[Debian FTP Masters]

Accepted:

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Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Doug Torrance 
Changes:
 macaulay2 (1.18+ds-3) unstable; urgency=medium
 .
   * debian/patches/skip-failing-package-tests.patch
 - Skip check(5, "MultiprojectiveVarieties"); failing on armhf.
   * debian/rules
 - Allow examples to fail on mipsel, mips64el, and ppc64el buildd
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   * debian/scripts/generate-examples.m2
 - Cache new failing examples:
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Processing of macaulay2_1.18+ds-3_source.changes

[Debian FTP Masters]

macaulay2_1.18+ds-3_source.changes uploaded successfully to localhost
along with the files:
  macaulay2_1.18+ds-3.dsc
  macaulay2_1.18+ds-3.debian.tar.xz
  macaulay2_1.18+ds-3_source.buildinfo

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Processed: Re: Bug#994405: libgmp10:i386: buffer overflow due to integer overflow in mpz/inp_raw.c on 32-bit machines

[Debian Bug Tracking System]

Processing control commands:

> severity -1 important
Bug #994405 [libgmp10] libgmp10:i386: buffer overflow due to integer overflow 
in mpz/inp_raw.c on 32-bit machines
Severity set to 'important' from 'grave'
> notfound -1 2:6.2.1+dfsg-2
Bug #994405 [libgmp10] libgmp10:i386: buffer overflow due to integer overflow 
in mpz/inp_raw.c on 32-bit machines
No longer marked as found in versions gmp/2:6.2.1+dfsg-2.
> found -1 2:6.2.1+dfsg-1
Bug #994405 [libgmp10] libgmp10:i386: buffer overflow due to integer overflow 
in mpz/inp_raw.c on 32-bit machines
Marked as found in versions gmp/2:6.2.1+dfsg-1.

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Processed: Re: Bug#994405: libgmp10:i386: buffer overflow due to integer overflow in mpz/inp_raw.c on 32-bit machines

[Debian Bug Tracking System]

Processing control commands:

> severity -1 important
Bug #994405 [libgmp10] libgmp10:i386: buffer overflow due to integer overflow 
in mpz/inp_raw.c on 32-bit machines
Ignoring request to change severity of Bug 994405 to the same value.
> notfound -1 2:6.2.1+dfsg-2
Bug #994405 [libgmp10] libgmp10:i386: buffer overflow due to integer overflow 
in mpz/inp_raw.c on 32-bit machines
Ignoring request to alter found versions of bug #994405 to the same values 
previously set
> found -1 2:6.2.1+dfsg-1
Bug #994405 [libgmp10] libgmp10:i386: buffer overflow due to integer overflow 
in mpz/inp_raw.c on 32-bit machines
Ignoring request to alter found versions of bug #994405 to the same values 
previously set

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Bug#994405: libgmp10:i386: buffer overflow due to integer overflow in mpz/inp_raw.c on 32-bit machines

[Anton Gladky]

Control: severity -1 important
Control: notfound -1 2:6.2.1+dfsg-2
Control: found -1 2:6.2.1+dfsg-1

Thanks for the bug report. We will fix it when CVE (if any) will be
assigned and upstream patch will be available.

Though, the integer overflows are not making the package unusable in most
cases.
Thus the severity is reduced.

Regards

Anton
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qcustomplot_2.0.1+dfsg1-5_source.changes ACCEPTED into unstable

[Debian FTP Masters]

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Source: qcustomplot
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Version: 2.0.1+dfsg1-5
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Timo Röhling 
Changes:
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 .
   * Team upload.
   * [51201ca] Fix autopkgtest regression with CMake 3.19+
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Processing of qcustomplot_2.0.1+dfsg1-5_source.changes

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qcustomplot_2.0.1+dfsg1-5_source.changes uploaded successfully to localhost
along with the files:
  qcustomplot_2.0.1+dfsg1-5.dsc
  qcustomplot_2.0.1+dfsg1-5.debian.tar.xz
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oce_0.18.3-2_source.changes ACCEPTED into unstable

[Debian FTP Masters]

Accepted:

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Thu, 16 Sep 2021 19:18:41 +0200
Source: oce
Architecture: source
Version: 0.18.3-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Timo Röhling 
Changes:
 oce (0.18.3-2) unstable; urgency=medium
 .
   * Team upload.
   * [11daad6] Fix autopkgtest regression with CMake 3.19+
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Processing of oce_0.18.3-2_source.changes

[Debian FTP Masters]

oce_0.18.3-2_source.changes uploaded successfully to localhost
along with the files:
  oce_0.18.3-2.dsc
  oce_0.18.3-2.debian.tar.xz
  oce_0.18.3-2_amd64.buildinfo

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Bug#994488: alglib: autopkgtest regression with CMake 3.19+

[Anton Gladky]

Hi Timo,

thanks for the patch! Yes, feel free to upload it. Please update git and
tag a new upload.

Regards

Anton


Am Do., 16. Sept. 2021 um 18:15 Uhr schrieb Timo Röhling <
roehl...@debian.org>:

> Package: src:alglib
> Version: 3.17.0-2
> Tag: patch
>
> Dear maintainer,
>
> the alglib autopkgtest suite fails due to a deprecation warning with
> CMake 3.19+ if cmake_minimum_required() requests a version earlier
> than 2.8.12. The attached patch bumps the minimum version in
> debian/tests to 3.7, which I picked because it is the CMake version
> in oldoldstable.
>
> As I am a member of the Science Team, I can also fix and upload this
> for you if you are starved for developer time; just give me the
> green light.
>
> Cheers
> Timo
>
> --
> ⢀⣴⠾⠻⢶⣦⠀   ╭╮
> ⣾⠁⢠⠒⠀⣿⡁   │ Timo Röhling   │
> ⢿⡄⠘⠷⠚⠋⠀   │ 9B03 EBB9 8300 DF97 C2B1  23BF CC8C 6BDD 1403 F4CA │
> ⠈⠳⣄   ╰╯
> --
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>
> https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-science-maintainers
>
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coin3_4.0.0+ds-2_source.changes ACCEPTED into unstable

[Debian FTP Masters]

Accepted:

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Thu, 16 Sep 2021 18:39:02 +0200
Source: coin3
Architecture: source
Version: 4.0.0+ds-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 

Changed-By: Timo Röhling 
Changes:
 coin3 (4.0.0+ds-2) unstable; urgency=medium
 .
   * Team upload.
   * [3591aff] Fix autopkgtest regression with CMake 3.19+
Checksums-Sha1:
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coin3_4.0.0+ds-2.debian.tar.xz
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Processing of coin3_4.0.0+ds-2_source.changes

[Debian FTP Masters]

coin3_4.0.0+ds-2_source.changes uploaded successfully to localhost
along with the files:
  coin3_4.0.0+ds-2.dsc
  coin3_4.0.0+ds-2.debian.tar.xz
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Bug#994488: marked as done (alglib: autopkgtest regression with CMake 3.19+)

[Debian Bug Tracking System]

Your message dated Thu, 16 Sep 2021 16:48:44 +
with message-id 
and subject line Bug#994488: fixed in alglib 3.17.0-3
has caused the Debian Bug report #994488,
regarding alglib: autopkgtest regression with CMake 3.19+
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
994488: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=994488
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---

Package: src:alglib
Version: 3.17.0-2
Tag: patch

Dear maintainer,

the alglib autopkgtest suite fails due to a deprecation warning with
CMake 3.19+ if cmake_minimum_required() requests a version earlier
than 2.8.12. The attached patch bumps the minimum version in
debian/tests to 3.7, which I picked because it is the CMake version
in oldoldstable.

As I am a member of the Science Team, I can also fix and upload this
for you if you are starved for developer time; just give me the
green light.

Cheers
Timo

--
⢀⣴⠾⠻⢶⣦⠀   ╭╮
⣾⠁⢠⠒⠀⣿⡁   │ Timo Röhling   │
⢿⡄⠘⠷⠚⠋⠀   │ 9B03 EBB9 8300 DF97 C2B1  23BF CC8C 6BDD 1403 F4CA │
⠈⠳⣄   ╰╯
diff --git a/debian/tests/build1 b/debian/tests/build1
index 5b21c12..9e49228 100755
--- a/debian/tests/build1
+++ b/debian/tests/build1
@@ -15,7 +15,7 @@ mkdir src
 cd src
 
 cat < CMakeLists.txt
-cmake_minimum_required(VERSION 2.6)
+cmake_minimum_required(VERSION 3.7)
 project(demo)
 find_package(ALGLIB REQUIRED)
 include_directories(\${ALGLIB_INCLUDE_DIRS})
diff --git a/debian/tests/build2 b/debian/tests/build2
index aeb5d7c..fcb67d9 100755
--- a/debian/tests/build2
+++ b/debian/tests/build2
@@ -15,7 +15,7 @@ mkdir src
 cd src
 
 cat < CMakeLists.txt
-cmake_minimum_required(VERSION 2.6)
+cmake_minimum_required(VERSION 3.7)
 project(demo)
 find_package(ALGLIB REQUIRED)
 include_directories(\${ALGLIB_INCLUDE_DIRS})
diff --git a/debian/tests/build3 b/debian/tests/build3
index 1f973d3..6656312 100755
--- a/debian/tests/build3
+++ b/debian/tests/build3
@@ -15,7 +15,7 @@ mkdir src
 cd src
 
 cat < CMakeLists.txt
-cmake_minimum_required(VERSION 2.6)
+cmake_minimum_required(VERSION 3.7)
 project(demo)
 find_package(ALGLIB REQUIRED)
 include_directories(\${ALGLIB_INCLUDE_DIRS})
diff --git a/debian/tests/build4 b/debian/tests/build4
index 630f116..b6de25c 100755
--- a/debian/tests/build4
+++ b/debian/tests/build4
@@ -15,7 +15,7 @@ mkdir src
 cd src
 
 cat < CMakeLists.txt
-cmake_minimum_required(VERSION 2.6)
+cmake_minimum_required(VERSION 3.7)
 project(demo)
 find_package(ALGLIB REQUIRED)
 include_directories(\${ALGLIB_INCLUDE_DIRS})
diff --git a/debian/tests/build5 b/debian/tests/build5
index 659f48c..c715ed6 100755
--- a/debian/tests/build5
+++ b/debian/tests/build5
@@ -15,7 +15,7 @@ mkdir src
 cd src
 
 cat < CMakeLists.txt
-cmake_minimum_required(VERSION 2.6)
+cmake_minimum_required(VERSION 3.7)
 project(demo)
 find_package(ALGLIB REQUIRED)
 include_directories(\${ALGLIB_INCLUDE_DIRS})


signature.asc
Description: PGP signature
--- End Message ---
--- Begin Message ---
Source: alglib
Source-Version: 3.17.0-3
Done: Timo Röhling 

We believe that the bug you reported is fixed in the latest version of
alglib, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 994...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Timo Röhling  (supplier of updated alglib package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Thu, 16 Sep 2021 18:29:16 +0200
Source: alglib
Architecture: source
Version: 3.17.0-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 

Changed-By: Timo Röhling 
Closes: 994488
Changes:
 alglib (3.17.0-3) unstable; urgency=medium
 .
   * Team upload.
   * [16f7f86] Fix autopkgtest regression with CMake 3.19+ (Closes: #994488)
Checksums-Sha1:
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Checksums-Sha256:
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alglib_3.17.0-3_source.changes ACCEPTED into unstable

[Debian FTP Masters]

Accepted:

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Thu, 16 Sep 2021 18:29:16 +0200
Source: alglib
Architecture: source
Version: 3.17.0-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 

Changed-By: Timo Röhling 
Closes: 994488
Changes:
 alglib (3.17.0-3) unstable; urgency=medium
 .
   * Team upload.
   * [16f7f86] Fix autopkgtest regression with CMake 3.19+ (Closes: #994488)
Checksums-Sha1:
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Files:
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alglib_3.17.0-3.debian.tar.xz
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alglib_3.17.0-3_amd64.buildinfo

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Bug#994488: alglib: autopkgtest regression with CMake 3.19+

[Timo Röhling]

On Thu, 16 Sep 2021 18:11:23 +0200 Timo =?utf-8?Q?R=C3=B6hling?= 
 wrote:

Package: src:alglib
Version: 3.17.0-2
Tag: patch

Dear maintainer,

the alglib autopkgtest suite fails due to a deprecation warning with
CMake 3.19+ if cmake_minimum_required() requests a version earlier
than 2.8.12. The attached patch bumps the minimum version in
debian/tests to 3.7, which I picked because it is the CMake version
in oldoldstable.

As I am a member of the Science Team, I can also fix and upload this
for you if you are starved for developer time; just give me the
green light.

Following up on the discussion on debian-science@, I'll go ahead and
fix it directly, no action required on your part. Sorry for the
noise.


--
⢀⣴⠾⠻⢶⣦⠀   ╭╮
⣾⠁⢠⠒⠀⣿⡁   │ Timo Röhling   │
⢿⡄⠘⠷⠚⠋⠀   │ 9B03 EBB9 8300 DF97 C2B1  23BF CC8C 6BDD 1403 F4CA │
⠈⠳⣄   ╰╯


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Processing of alglib_3.17.0-3_source.changes

[Debian FTP Masters]

alglib_3.17.0-3_source.changes uploaded successfully to localhost
along with the files:
  alglib_3.17.0-3.dsc
  alglib_3.17.0-3.debian.tar.xz
  alglib_3.17.0-3_amd64.buildinfo

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Bug#994488: alglib: autopkgtest regression with CMake 3.19+

[Timo Röhling]

Package: src:alglib
Version: 3.17.0-2
Tag: patch

Dear maintainer,

the alglib autopkgtest suite fails due to a deprecation warning with
CMake 3.19+ if cmake_minimum_required() requests a version earlier
than 2.8.12. The attached patch bumps the minimum version in
debian/tests to 3.7, which I picked because it is the CMake version
in oldoldstable.

As I am a member of the Science Team, I can also fix and upload this
for you if you are starved for developer time; just give me the
green light.

Cheers
Timo

--
⢀⣴⠾⠻⢶⣦⠀   ╭╮
⣾⠁⢠⠒⠀⣿⡁   │ Timo Röhling   │
⢿⡄⠘⠷⠚⠋⠀   │ 9B03 EBB9 8300 DF97 C2B1  23BF CC8C 6BDD 1403 F4CA │
⠈⠳⣄   ╰╯
diff --git a/debian/tests/build1 b/debian/tests/build1
index 5b21c12..9e49228 100755
--- a/debian/tests/build1
+++ b/debian/tests/build1
@@ -15,7 +15,7 @@ mkdir src
 cd src
 
 cat < CMakeLists.txt
-cmake_minimum_required(VERSION 2.6)
+cmake_minimum_required(VERSION 3.7)
 project(demo)
 find_package(ALGLIB REQUIRED)
 include_directories(\${ALGLIB_INCLUDE_DIRS})
diff --git a/debian/tests/build2 b/debian/tests/build2
index aeb5d7c..fcb67d9 100755
--- a/debian/tests/build2
+++ b/debian/tests/build2
@@ -15,7 +15,7 @@ mkdir src
 cd src
 
 cat < CMakeLists.txt
-cmake_minimum_required(VERSION 2.6)
+cmake_minimum_required(VERSION 3.7)
 project(demo)
 find_package(ALGLIB REQUIRED)
 include_directories(\${ALGLIB_INCLUDE_DIRS})
diff --git a/debian/tests/build3 b/debian/tests/build3
index 1f973d3..6656312 100755
--- a/debian/tests/build3
+++ b/debian/tests/build3
@@ -15,7 +15,7 @@ mkdir src
 cd src
 
 cat < CMakeLists.txt
-cmake_minimum_required(VERSION 2.6)
+cmake_minimum_required(VERSION 3.7)
 project(demo)
 find_package(ALGLIB REQUIRED)
 include_directories(\${ALGLIB_INCLUDE_DIRS})
diff --git a/debian/tests/build4 b/debian/tests/build4
index 630f116..b6de25c 100755
--- a/debian/tests/build4
+++ b/debian/tests/build4
@@ -15,7 +15,7 @@ mkdir src
 cd src
 
 cat < CMakeLists.txt
-cmake_minimum_required(VERSION 2.6)
+cmake_minimum_required(VERSION 3.7)
 project(demo)
 find_package(ALGLIB REQUIRED)
 include_directories(\${ALGLIB_INCLUDE_DIRS})
diff --git a/debian/tests/build5 b/debian/tests/build5
index 659f48c..c715ed6 100755
--- a/debian/tests/build5
+++ b/debian/tests/build5
@@ -15,7 +15,7 @@ mkdir src
 cd src
 
 cat < CMakeLists.txt
-cmake_minimum_required(VERSION 2.6)
+cmake_minimum_required(VERSION 3.7)
 project(demo)
 find_package(ALGLIB REQUIRED)
 include_directories(\${ALGLIB_INCLUDE_DIRS})


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Bug#994484: hkl: binary-any FTBFS due to missing build dependency on gtk-doc-tools

[Adrian Bunk]

Source: hkl
Version: 5.0.0.2816-1
Severity: serious
Tags: ftbfs

https://buildd.debian.org/status/logs.php?pkg=hkl=5.0.0.2816-1

...
configure.ac:68: the top level
configure.ac:31: installing 'config/compile'
configure.ac:38: installing 'config/config.guess'
configure.ac:38: installing 'config/config.sub'
configure.ac:27: installing 'config/install-sh'
configure.ac:27: installing 'config/missing'
automake: error: cannot open < gtk-doc.make: No such file or directory
autoreconf: error: automake failed with exit status: 1
find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' 
-o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a  -type f -exec 
md5sum {} + -o -type l -printf "symlink  %p
" > debian/autoreconf.after
dh_autoreconf: error: autoreconf -f -i returned exit code 1
make[1]: *** [debian/rules:18: override_dh_autoreconf] Error 25

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mpi4py_3.1.1-6_source.changes ACCEPTED into experimental

[Debian FTP Masters]

Accepted:

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Hash: SHA256

Format: 1.8
Date: Thu, 16 Sep 2021 14:51:13 +0200
Source: mpi4py
Architecture: source
Version: 3.1.1-6
Distribution: experimental
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Drew Parsons 
Changes:
 mpi4py (3.1.1-6) experimental; urgency=medium
 .
   * Team upload.
   * use NUM_TEST_PROCESSES to set number of processes used in
 build-time tests. Default 5, set to 3 for "weak MPI" arches which
 handle oversubscription poorly.
 Currently WEAK_MPI_ARCH_LIST = ia64 only.
   * debian patch skip_tests_riscv64.patch skips TestDPM.testJoin on
 riscv64, which stalls in build-time tests.
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hkl_5.0.0.2816-1_source.changes ACCEPTED into unstable

[Debian FTP Masters]

Accepted:

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Date: Thu, 16 Sep 2021 15:05:16 +0200
Source: hkl
Architecture: source
Version: 5.0.0.2816-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Picca Frédéric-Emmanuel 
Changes:
 hkl (5.0.0.2816-1) unstable; urgency=medium
 .
   * New upstream version 5.0.0.2816
   * Bump debhelper from old 12 to 13.
   * Apply multi-arch hints. + libhkl-doc: Add Multi-Arch: foreign.
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Processing of mpi4py_3.1.1-6_source.changes

[Debian FTP Masters]

mpi4py_3.1.1-6_source.changes uploaded successfully to localhost
along with the files:
  mpi4py_3.1.1-6.dsc
  mpi4py_3.1.1-6.debian.tar.xz

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Processing of hkl_5.0.0.2816-1_source.changes

[Debian FTP Masters]

hkl_5.0.0.2816-1_source.changes uploaded successfully to localhost
along with the files:
  hkl_5.0.0.2816-1.dsc
  hkl_5.0.0.2816.orig.tar.xz
  hkl_5.0.0.2816-1.debian.tar.xz

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dxflib_3.26.4-1_source.changes ACCEPTED into unstable

[Debian FTP Masters]

Accepted:

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Format: 1.8
Date: Thu, 16 Sep 2021 10:33:38 +0100
Source: dxflib
Architecture: source
Version: 3.26.4-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 

Changed-By: Alastair McKinstry 
Changes:
 dxflib (3.26.4-1) unstable; urgency=medium
 .
   [ Alastair McKinstry ]
   * New upstream release
   * Update patches to bump soverson to 3.26.4 from 3.17.0
   * Standards-Version: 4.6.0
   * Use debhelper-compat (= 13)
   * Add d/gpb.conf file to point to DEP-14 branches
   * Add not-installed file: not installing la files
 .
   [ Jelmer Vernooij ]
   * Use secure copyright file specification URI.
   * Trim trailing whitespace.
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Processing of dxflib_3.26.4-1_source.changes

[Debian FTP Masters]

dxflib_3.26.4-1_source.changes uploaded successfully to localhost
along with the files:
  dxflib_3.26.4-1.dsc
  dxflib_3.26.4.orig.tar.gz
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Bug#994475: wannier90 autopkgtest needs to be adapted for lapack 3.10

[Sébastien Villemot]

Package: wannier90
Version: 3.1.0+ds-4
Severity: serious
Tags: sid bookworm
X-Debbugs-CC: debian...@lists.debian.org
User: debian...@lists.debian.org
Usertags: needs-update

Dear Maintainer,

Since the upload of lapack 3.10.0-1, the autopkgtest of wannier90
fails in unstable. See for example:
https://ci.debian.net/data/autopkgtest/testing/amd64/w/wannier90/15283094/log.gz

It seems that it’s only a matter of slightly increasing a test
tolerance, most likely because some lapack algorithm is now implemented
in a different way.

However, if you think that this is a bug in lapack, feel free to
reassign it, ideally with the details of your analysis.

N.B. : when trying to reproduce the problem, please ensure that your
lapack alternative (as given by “update-alternatives --display
liblapack.so.3-x86_64-linux-gnu) points to /usr/lib/x86_64-linux-
gnu/lapack/liblapack.so.3, and not to the binary provided by either
openblas or atlas (because these two have not yet been recompiled
against lapack 3.10, and thus do not expose the problem).

Best regards,

-- 
⢀⣴⠾⠻⢶⣦⠀  Sébastien Villemot
⣾⠁⢠⠒⠀⣿⡁  Debian Developer
⢿⡄⠘⠷⠚⠋⠀  https://sebastien.villemot.name
⠈⠳⣄  https://www.debian.org



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schroedinger-coordgenlibs_3.0.0-1_amd64.changes is NEW

[Debian FTP Masters]

binary:libcoordgen3 is NEW.
binary:libcoordgen3 is NEW.

Your package has been put into the NEW queue, which requires manual action
from the ftpteam to process. The upload was otherwise valid (it had a good
OpenPGP signature and file hashes are valid), so please be patient.

Packages are routinely processed through to the archive, and do feel
free to browse the NEW queue[1].

If there is an issue with the upload, you will receive an email from a
member of the ftpteam.

If you have any questions, you may reply to this email.

[1]: https://ftp-master.debian.org/new.html
 or https://ftp-master.debian.org/backports-new.html for *-backports

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Processing of schroedinger-coordgenlibs_3.0.0-1_amd64.changes

[Debian FTP Masters]

schroedinger-coordgenlibs_3.0.0-1_amd64.changes uploaded successfully to 
localhost
along with the files:
  schroedinger-coordgenlibs_3.0.0-1.dsc
  schroedinger-coordgenlibs_3.0.0.orig.tar.gz
  schroedinger-coordgenlibs_3.0.0-1.debian.tar.xz
  libcoordgen-dev_3.0.0-1_amd64.deb
  libcoordgen3-dbgsym_3.0.0-1_amd64.deb
  libcoordgen3_3.0.0-1_amd64.deb
  schroedinger-coordgenlibs_3.0.0-1_amd64.buildinfo

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Bug#993781: marked as done (missing Depends: python3-jinja2: xarray uses dask widgets)

[Debian Bug Tracking System]

Your message dated Thu, 16 Sep 2021 09:52:08 +0100
with message-id <8556b568-f567-6cad-67a7-67bf857c1...@debian.org>
and subject line Close
has caused the Debian Bug report #993781,
regarding missing Depends: python3-jinja2: xarray uses dask widgets
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
993781: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=993781
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: python3-dask
Version: 2021.08.1+dfsg-1
Severity: serious
Justification: debci
Control: affects -1 src:python-xarray

dask imports from jinja2 in
/usr/lib/python3/dist-packages/dask/widgets/widgets.py, but
Depends: python3-jinja2 has not been declared.

dask's own tests are apparently not testing widget since they're passing, but
the error is triggered by python-xarray, see
https://ci.debian.net/data/autopkgtest/testing/amd64/p/python-xarray/15028004/log.gz


I guess debian/control needs Build-Depends: python3-jinja2
and then dh_python will take care of the Depends field in the binary package.

Drew
--- End Message ---
--- Begin Message ---

close 993781

thanks


This bug was fixed in 0.19.0-6


--
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Misentropy: doubting that the Universe is becoming more disordered.--- End Message ---
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Bug#961645: marked as done (hypre: provide 64 bit (bigint/mixedint) build)

[Debian Bug Tracking System]

Your message dated Thu, 16 Sep 2021 07:19:24 +
with message-id 
and subject line Bug#961645: fixed in hypre 2.22.1-1exp1
has caused the Debian Bug report #961645,
regarding hypre: provide 64 bit (bigint/mixedint) build
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
961645: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=961645
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: hypre
Severity: normal
Control: block 953116 by -1

We're discussing introducing a 64 bit-build for the computational
stack. This refers to 64-bit addressing to cells in meshes, etc.

c.f. Bug#953116 (petsc)
Bug#961108 (openmpi)
https://lists.debian.org/debian-science/2020/05/msg00051.html

BLAS is already 64-bit enabled.

For the 64-bit environment to work, it needs to be carried through all
along the library stack, from BLAS to PETSc.

PETSc depends on hypre, and 64-bit PETSc requires 64-bit hypre, or
more precisely, petsc --with-64-bit-indices option requires Hypre
built with --enable-bigint or --enable-mixedint.

Probably we want 2 separate builds, 32-bit (the current
libhypre-dev) and a separate 64-bit libhypre64-dev

Opening this bug to track the chain of 64-bit package dependencies.


-- System Information:
Debian Release: bullseye/sid
  APT prefers unstable
  APT policy: (500, 'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)
Foreign Architectures: i386

Kernel: Linux 5.6.0-1-amd64 (SMP w/8 CPU cores)
Kernel taint flags: TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE
Locale: LANG=en_AU.UTF-8, LC_CTYPE=en_AU.UTF-8 (charmap=UTF-8), 
LANGUAGE=en_AU:en (charmap=UTF-8)
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
--- End Message ---
--- Begin Message ---
Source: hypre
Source-Version: 2.22.1-1exp1
Done: Drew Parsons 

We believe that the bug you reported is fixed in the latest version of
hypre, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 961...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Drew Parsons  (supplier of updated hypre package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Thu, 16 Sep 2021 08:52:45 +0200
Source: hypre
Architecture: source
Version: 2.22.1-1exp1
Distribution: experimental
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Drew Parsons 
Closes: 961645
Changes:
 hypre (2.22.1-1exp1) experimental; urgency=medium
 .
   * Team upload.
   * New upstream release.
   * provide 64-bit only on arches where libblas64-dev, liblapack64-dev
 are available. Closes: #961645.
 - Test for DEB_HOST_ARCH_BITS=64 in debian/rules
   (following the pattern used by lapack)
   * skip TEST_bench in debian/tests (autopkgtest),
 because life is too short
   * clean test dir before building tests for debian/tests
   * Standards-Version: 4.6.0
Checksums-Sha1:
 1a3ca79056883f5d3ea7f7a6f3f7135bfacc0c5d 3534 hypre_2.22.1-1exp1.dsc
 5351894e605ca06e0084cc3b04214fecf8502c9d 6037099 hypre_2.22.1.orig.tar.gz
 58aa08fe4a948db6809b7cc44bd38ead362fc6fc 17576 hypre_2.22.1-1exp1.debian.tar.xz
 2b7cb60fd4f0cad362c7d34c6de16b9a269a7409 8722 
hypre_2.22.1-1exp1_source.buildinfo
Checksums-Sha256:
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hypre_2.22.1-1exp1.dsc
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hypre_2.22.1.orig.tar.gz
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hypre_2.22.1-1exp1.debian.tar.xz
 6ab14a91609f1b2f631de99c3fb2bf320f3706b292c422dc76d1ca0649552e29 8722 
hypre_2.22.1-1exp1_source.buildinfo
Files:
 0fa9750dbc1f7e962fca76e09303e171 3534 math optional hypre_2.22.1-1exp1.dsc
 5ab3d78ef0534ce4e3d203a59bac01a0 6037099 math optional hypre_2.22.1.orig.tar.gz
 80102fe597b6f9c9f75ac01839fb4315 17576 math optional 
hypre_2.22.1-1exp1.debian.tar.xz
 71ea40ec3dfa6b96bf6ad034687e8e03 8722 math optional 
hypre_2.22.1-1exp1_source.buildinfo

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hypre_2.22.1-1exp1_source.changes ACCEPTED into experimental

[Debian FTP Masters]

Accepted:

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Thu, 16 Sep 2021 08:52:45 +0200
Source: hypre
Architecture: source
Version: 2.22.1-1exp1
Distribution: experimental
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Drew Parsons 
Closes: 961645
Changes:
 hypre (2.22.1-1exp1) experimental; urgency=medium
 .
   * Team upload.
   * New upstream release.
   * provide 64-bit only on arches where libblas64-dev, liblapack64-dev
 are available. Closes: #961645.
 - Test for DEB_HOST_ARCH_BITS=64 in debian/rules
   (following the pattern used by lapack)
   * skip TEST_bench in debian/tests (autopkgtest),
 because life is too short
   * clean test dir before building tests for debian/tests
   * Standards-Version: 4.6.0
Checksums-Sha1:
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 2b7cb60fd4f0cad362c7d34c6de16b9a269a7409 8722 
hypre_2.22.1-1exp1_source.buildinfo
Checksums-Sha256:
 eec990e94ae373e752f52d79e2f9c9623691b7a3e9b7cd98237f92be3aff61e0 3534 
hypre_2.22.1-1exp1.dsc
 c1e7761b907c2ee0098091b69797e9be977bff8b7fd0479dc20cad42f45c4084 6037099 
hypre_2.22.1.orig.tar.gz
 162a0fb440ffdf6c3b2a8585064bc3bead3c2c392326d368174272562ba10947 17576 
hypre_2.22.1-1exp1.debian.tar.xz
 6ab14a91609f1b2f631de99c3fb2bf320f3706b292c422dc76d1ca0649552e29 8722 
hypre_2.22.1-1exp1_source.buildinfo
Files:
 0fa9750dbc1f7e962fca76e09303e171 3534 math optional hypre_2.22.1-1exp1.dsc
 5ab3d78ef0534ce4e3d203a59bac01a0 6037099 math optional hypre_2.22.1.orig.tar.gz
 80102fe597b6f9c9f75ac01839fb4315 17576 math optional 
hypre_2.22.1-1exp1.debian.tar.xz
 71ea40ec3dfa6b96bf6ad034687e8e03 8722 math optional 
hypre_2.22.1-1exp1_source.buildinfo

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Thank you for your contribution to Debian.

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Processing of hypre_2.22.1-1exp1_source.changes

[Debian FTP Masters]

hypre_2.22.1-1exp1_source.changes uploaded successfully to localhost
along with the files:
  hypre_2.22.1-1exp1.dsc
  hypre_2.22.1.orig.tar.gz
  hypre_2.22.1-1exp1.debian.tar.xz
  hypre_2.22.1-1exp1_source.buildinfo

Greetings,

Your Debian queue daemon (running on host usper.debian.org)

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