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Bug#836384: ignition-transport: breaks with new protobuf3, and link failures

[Gianfranco Costamagna]

Source: ignition-transport
Version: 1.3.0-2
Severity: serious

Hi, the latest protobuf3 broke ignition-transport testsuite and package, lets 
analyze the issues:
(based on the main on debian/tests
#include 

int main()
{
// Create a transport node.
ignition::transport::Uuid uuid;
return 0;
}



first issue:
./build 
In file included from 
/usr/include/ignition/transport1/ignition/transport/NodeShared.hh:40:0,
from /usr/include/ignition/transport1/ignition/transport/Node.hh:41,
from /usr/include/ignition/transport1/ignition/transport.hh:9,
from igntest.c:1:
/usr/include/ignition/transport1/ignition/transport/RepHandler.hh:38:41: fatal 
error: google/protobuf/stubs/casts.h: No such file or directory
#include 
^


this file has been deleted in new protobuf I guess
(removing that line from the hh file works a little better)

that said, the second issue is:
pkg-config --cflags --libs ignition-transport1
-std=c++11 -I/usr/include/ignition/transport1 -lignition-transport1 -l1


that -l1 breaks the build, lets see:
./build 
/usr/bin/ld: cannot find -l1



g++ -o igntest igntest.c `pkg-config --cflags --libs ignition-transport1`
/usr/bin/ld: cannot find -l1
collect2: error: ld returned 1 exit status



removing it works:
g++ -o igntest igntest.c -std=c++11 -I/usr/include/ignition/transport1 
-lignition-transport1
./igntest
echo $?


As usual, please let me know if you have a fix or you need further details

thanks,
G.

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fplll_5.0.2-1_source.changes ACCEPTED into experimental

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Accepted:

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Source: fplll
Binary: libfplll2 libfplll-dev fplll-tools
Architecture: source
Version: 5.0.2-1
Distribution: experimental
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Julien Puydt 
Description:
 fplll-tools - Tools to compute LLL-reduction of Euclidian lattices
 libfplll-dev - Library for LLL-reduction of Euclidean lattices, development
 libfplll2  - Library for LLL-reduction of Euclidean lattices, runtime
Changes:
 fplll (5.0.2-1) experimental; urgency=medium
 .
   * New upstream release.
   * Dropping all patches, since upstream took them.
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gnuplot-iostream 0~20140302.gitc8919a0+dfsg-2 MIGRATED to testing

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  Previous version: (not in testing)
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arpack++ 2.3-6 MIGRATED to testing

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opengm_2.3.6+20160901-1_source.changes ACCEPTED into unstable

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Accepted:

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Hash: SHA256

Format: 1.8
Date: Fri, 02 Sep 2016 11:43:07 +0100
Source: opengm
Binary: libopengm-bin libopengm-dev libopengm-doc python-opengm 
python-opengm-doc
Architecture: source
Version: 2.3.6+20160901-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Ghislain Antony Vaillant 
Description:
 libopengm-bin - command line tools for OpenGM
 libopengm-dev - C++ template library for discrete factor graph models
 libopengm-doc - documentation and examples for OpenGM
 python-opengm - Python interface to OpenGM
 python-opengm-doc - documentation for the Python interface to OpenGM
Closes: 836216
Changes:
 opengm (2.3.6+20160901-1) unstable; urgency=medium
 .
   * New upstream snapshot. (Closes: #836216)
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shark_3.1.3+ds1-1_source.changes ACCEPTED into unstable

[Debian FTP Masters]

Accepted:

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Date: Fri, 02 Sep 2016 15:43:38 +0100
Source: shark
Binary: libshark0 libshark-dev shark-doc
Architecture: source
Version: 3.1.3+ds1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Ghislain Antony Vaillant 
Description:
 libshark-dev - development files for Shark
 libshark0  - Shark machine learning library
 shark-doc  - documentation and examples for Shark
Closes: 820701
Changes:
 shark (3.1.3+ds1-1) unstable; urgency=medium
 .
   * New upstream release. (Closes: #820701)
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Processed: forwarded upstream

[Debian Bug Tracking System]

Processing control commands:

> forwarded -1 https://github.com/pyFFTW/pyFFTW/issues/128
Bug #831669 [src:pyfftw] pyfftw: FTBFS on !x86 architectures - test failures
Set Bug forwarded-to-address to 'https://github.com/pyFFTW/pyFFTW/issues/128'.

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Bug#831669: forwarded upstream

[Ghislain Vaillant]

control: forwarded -1 https://github.com/pyFFTW/pyFFTW/issues/128

Upstream confirmed the non-portability of the package due to both heavy
reliance on x86 alignment, and availability of the long-double precision
of the FFTW library. The latter is not supported by all architectures.

Solving this issue is not high on upstream's priority, so the question 
remains whether we should just cut the archive from the failing 
architectures and only keep the i386 and amd64, or just drop the

package altogether.

Best regards,
Ghis

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Bug#836216: marked as done (opengm: FTBFS (32-bit): SelfFusion/LazyFlipper type mismatch)

[Debian Bug Tracking System]

Your message dated Fri, 02 Sep 2016 16:41:43 +
with message-id 
and subject line Bug#836216: fixed in opengm 2.3.6+20160901-1
has caused the Debian Bug report #836216,
regarding opengm: FTBFS (32-bit): SelfFusion/LazyFlipper type mismatch
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


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Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: opengm
Version: 2.3.6+20160131-2
Severity: serious
Justification: fails to build from source (but built successfully in the past)

Thanks for taking care of #806379!

opengm is now in good shape on 64-bit architectures (apart from one
test failure on sparc64, which isn't a release architecture), but
32-bit builds are hitting compilation errors (heavily excerpted below).

AFAICT, these errors stem from the fact that the intended
LazyFlipper<...>::Parameter constructor requires a size_t

https://anonscm.debian.org/cgit/debian-science/packages/opengm.git/tree/include/opengm/inference/lazyflipper.hxx#n156

but CSelfFusion<...>::Parameter::maxSubgraphSize_ has type UInt64Type

https://anonscm.debian.org/cgit/debian-science/packages/opengm.git/tree/include/opengm/inference/self_fusion.hxx#n356

and these types are equivalent only on 64-bit architectures.

Could you please take a look?

Thanks!

---

  In file included from 
/«BUILDDIR»/opengm-2.3.6+20160814/src/interfaces/commandline/double/../../common/caller/lazyflipper_caller.hxx:5:0,
   from 
/«BUILDDIR»/opengm-2.3.6+20160814/src/interfaces/commandline/double/opengm_min_sum.cxx:22:
  /«BUILDDIR»/opengm-2.3.6+20160814/include/opengm/inference/lazyflipper.hxx: 
In instantiation of 'opengm::LazyFlipper::Parameter::Parameter(const 
P&)
   [with P = long long unsigned int;
 GM = opengm::GraphicalModel, opengm::SimpleDiscreteSpace >;
 ACC = opengm::Minimizer]':
  
/«BUILDDIR»/opengm-2.3.6+20160814/include/opengm/inference/self_fusion.hxx:150:53:
   required from 'size_t opengm::FusionVisitor::fuseVisit(INF&)
   [with INF = opengm::MessagePassing, 
opengm::Minimizer, opengm::BeliefPropagationUpdateRules<...>, 
opengm::MaxDistance>;
 SELF_FUSION = opengm::SelfFusion >;
 SELF_FUSION_VISITOR = 
opengm::visitors::TimingVisitor 
> >;
 size_t = unsigned int]'
  
/«BUILDDIR»/opengm-2.3.6+20160814/include/opengm/inference/self_fusion.hxx:99:35:
   required from 'size_t opengm::FusionVisitor::operator()(INF&)
   [with INF = opengm::MessagePassing<...>;
 SELF_FUSION = opengm::SelfFusion >;
 SELF_FUSION_VISITOR = 
opengm::visitors::TimingVisitor 
> >;
 size_t = unsigned int]'
  
/«BUILDDIR»/opengm-2.3.6+20160814/include/opengm/inference/messagepassing/messagepassing.hxx:384:17:
   required from 'void opengm::MessagePassing::inferAcyclic(VisitorType&)
   [with VisitorType = opengm::FusionVisitor, 
opengm::SelfFusion<...>, opengm::visitors::TimingVisitor<...> >;
 GM = opengm::GraphicalModel, opengm::DiscreteSpace<> >;
 ACC = opengm::Minimizer;
 UPDATE_RULES = 
opengm::BeliefPropagationUpdateRules, opengm::DiscreteSpace<> >, 
opengm::Minimizer, opengm::MessageBuffer > >;
 DIST = opengm::MaxDistance]'
  
/«BUILDDIR»/opengm-2.3.6+20160814/include/opengm/inference/messagepassing/messagepassing.hxx:259:19:
   required from 'opengm::InferenceTermination opengm::MessagePassing::infer(VisitorType&)
   [with VisitorType = opengm::FusionVisitor, 
opengm::SelfFusion >, 
opengm::visitors::TimingVisitor<...> >;
 GM = opengm::GraphicalModel, opengm::DiscreteSpace<> >;
 ACC = opengm::Minimizer;
 UPDATE_RULES = 
opengm::BeliefPropagationUpdateRules, 
opengm::Minimizer, opengm::MessageBuffer<...> >;
 DIST = 

Bug#836420: python-getfem++: please depend on python-scipy for autopkgtests

[Graham Inggs]

Package: python-getfem++
Version: 5.0+dfsg1-1
Severity: wishlist


Hi Anton

Please add a dependency to python-getfem++ on python-scipy.
It is required by the autopkgtests and probably for proper operation
of python-getfem++ as well.

--- a/debian/control
+++ b/debian/control
@@ -77,6 +78,7 @@
  python (<< 2.8),
  python,
  python-numpy,
+ python-scipy,
  ${misc:Depends},
  ${python:Depends},
  ${shlibs:Depends}

Regards
Graham

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Bug#820701: marked as done (shark: FTBFS on various architectures - testsuite failures)

[Debian Bug Tracking System]

Your message dated Fri, 02 Sep 2016 16:48:36 +
with message-id 
and subject line Bug#820701: fixed in shark 3.1.3+ds1-1
has caused the Debian Bug report #820701,
regarding shark: FTBFS on various architectures - testsuite failures
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


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Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: shark
Version: 3.1.0+ds1-1
Severity: serious

Hi,

shark FTBFS on various architectures due to testsuite failures. See:
https://buildd.debian.org/status/package.php?p=shark

The failures vary between architectures, but some common ones include
these on 32-bit x86 architectures (including i386):
  9 - BLAS_Vector_Expression (Failed)
 29 - DirectSearch_CMA (Failed)
 68 - Trainers_AbstractBudgetMaintenanceStrategy (Failed)
146 - ObjFunct_SquaredEpsilonHingeLoss (Failed)
158 - RBM_TruncatedExponentialLayer (Failed)

And this one on other 32-bit arches:
118 - Core_Math (Failed)

The Core_Math error seems to be 32-bit related since the test failed on
mipsel and passed on mips64el.

Thanks,
James

signature.asc
Description: This is a digitally signed message part
--- End Message ---
--- Begin Message ---
Source: shark
Source-Version: 3.1.3+ds1-1

We believe that the bug you reported is fixed in the latest version of
shark, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 820...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Ghislain Antony Vaillant  (supplier of updated shark 
package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


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Date: Fri, 02 Sep 2016 15:43:38 +0100
Source: shark
Binary: libshark0 libshark-dev shark-doc
Architecture: source
Version: 3.1.3+ds1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Ghislain Antony Vaillant 
Description:
 libshark-dev - development files for Shark
 libshark0  - Shark machine learning library
 shark-doc  - documentation and examples for Shark
Closes: 820701
Changes:
 shark (3.1.3+ds1-1) unstable; urgency=medium
 .
   * New upstream release. (Closes: #820701)
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shark_3.1.3+ds1.orig.tar.gz
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shark_3.1.3+ds1-1.debian.tar.xz

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Bug#836413: opengm: FTBFS on powerpc: test-io-hdf5 data types not equal

[Aaron M. Ucko]

Source: opengm
Version: 2.3.6+20160901-1
Severity: important
Justification: fails to build from source

opengm now compiles on powerpc (thanks!), but hits a test suite error:

  23/49 Test #24: test-io-hdf5 .***Exception: Other  0.11 
sec
  terminate called after throwing an instance of 'std::runtime_error'
what():  Data types not equal error.

FWIW, sparc64 hit the same error in 2.3.6+20160814-1.  (As of this
report, builds of 2.3.6+20160901-1 for sparc64 and most other
architectures are still in progress.)

Could you please take a look?

Thanks!

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Bug#835427: s/XML_NO_ERROR/XML_SUCCESS/

[Peter Green]

On 29/08/16 15:45, Peter Michael Green wrote:

tags 835427 +patch
thanks
Older versions of tinyxml defined both XML_NO_ERROR and XML_SUCCESS 
to 0. Never

versions define only XML_SUCCESS.


Attatched is a patch that replaces XML_NO_ERROR with XML_SUCCESS
Unfortunately while that patch fixed the FTBFS in raspbian stretch at 
the time the package is now failing for us for a different reason. While 
I saw this in raspbian I have no reason to belive it is raspbian specific.



In file included from /usr/include/spnav.h:33:0,
 from /<>/gazebo-7.3.0+dfsg/gazebo/gui/SpaceNav.cc:27:
/usr/include/google/protobuf/stubs/logging.h:66:7: error: expected identifier 
before 'int'
 class Status;
   ^
/usr/include/google/protobuf/stubs/logging.h:66:7: error: multiple types in one 
declaration
In file included from /usr/include/google/protobuf/stubs/common.h:45:0,
 from /usr/include/google/protobuf/stubs/atomicops.h:59,
 from 
/usr/include/google/protobuf/stubs/atomic_sequence_num.h:33,
 from /usr/include/google/protobuf/arena.h:52,
 from /usr/include/google/protobuf/message.h:118,
 from 
/<>/gazebo-7.3.0+dfsg/gazebo/transport/CallbackHelper.hh:20,
 from 
/<>/gazebo-7.3.0+dfsg/obj-arm-linux-gnueabihf/gazebo/transport/transport.hh:2,
 from 
/<>/gazebo-7.3.0+dfsg/gazebo/gui/SpaceNavPrivate.hh:23,
 from /<>/gazebo-7.3.0+dfsg/gazebo/gui/SpaceNav.cc:31:
/usr/include/google/protobuf/stubs/logging.h:90:32: error: expected ')' before 
'::' token
   LogMessage&  operator<<(const ::google::protobuf::util::Status&  status);
^~
/usr/include/google/protobuf/stubs/logging.h:90:32: error: 
'google::protobuf::internal::LogMessage&  
google::protobuf::internal::LogMessage::operator<<(...)' must not have variable 
number of arguments
/usr/include/google/protobuf/stubs/logging.h:90:26: error: expected ';' at end 
of member declaration
   LogMessage&  operator<<(const ::google::protobuf::util::Status&  status);
  ^
In file included from /usr/include/spnav.h:33:0,
 from /<>/gazebo-7.3.0+dfsg/gazebo/gui/SpaceNav.cc:27:
/usr/include/google/protobuf/stubs/logging.h:90:58: error: expected 
unqualified-id before 'int'
   LogMessage&  operator<<(const ::google::protobuf::util::Status&  status);
  ^
gazebo/gui/CMakeFiles/gazebo_gui.dir/build.make:1194: recipe for target 
'gazebo/gui/CMakeFiles/gazebo_gui.dir/SpaceNav.cc.o' failed

http://buildd.raspbian.org/status/fetch.php?pkg=gazebo=armhf=7.3.0%2Bdfsg-2%2Brpi1%2Bb1=1472782288

I'm guessing some sort of header conflict, I will try to take a look but not 
promising anything. Ideas welcome.

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getdp_2.9.2+dfsg1-1~bpo8+1_amd64.changes ACCEPTED into jessie-backports, jessie-backports

[Debian FTP Masters]

Accepted:

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1

Format: 1.8
Date: Thu, 01 Sep 2016 23:06:23 +0200
Source: getdp
Binary: getdp getdp-sparskit
Architecture: source amd64
Version: 2.9.2+dfsg1-1~bpo8+1
Distribution: jessie-backports
Urgency: medium
Maintainer: Debian Science Team 

Changed-By: Anton Gladky 
Description:
 getdp  - general environment for the treatment of discrete problems
 getdp-sparskit - general environment for the treatment of discrete problems
Changes:
 getdp (2.9.2+dfsg1-1~bpo8+1) jessie-backports; urgency=medium
 .
   * Rebuild for jessie-backports.
   * [04e3ffc] Update build-depends package names.
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Bug#835427: s/XML_NO_ERROR/XML_SUCCESS/

[Graham Inggs]

Hi Peter

On 2 September 2016 at 23:15, Peter Green  wrote:
> Unfortunately while that patch fixed the FTBFS in raspbian stretch at the
> time the package is now failing for us for a different reason. While I saw
> this in raspbian I have no reason to belive it is raspbian specific.
>
>
> In file included from /usr/include/spnav.h:33:0,
>  from
> /<>/gazebo-7.3.0+dfsg/gazebo/gui/SpaceNav.cc:27:
> /usr/include/google/protobuf/stubs/logging.h:66:7: error: expected
> identifier before 'int'
>  class Status;
>^
> /usr/include/google/protobuf/stubs/logging.h:66:7: error: multiple types in
> one declaration

This comes from protobuf 3.  I found it has already been fixed in git
[1], although the patch description is incorrect.

Regards
Graham


[1] 
https://anonscm.debian.org/cgit/debian-science/packages/gazebo.git/commit/?id=d033bbf3218580638e35b8df13565099a5c7c8db

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ceres-solver is marked for autoremoval from testing

[Debian testing autoremoval watch]

ceres-solver 1.11.0~dfsg0-5 is marked for autoremoval from testing on 2016-09-19

It is affected by these RC bugs:
835037: ceres-solver: FTBFS with eigen3 >> 3.3~beta1


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theano is marked for autoremoval from testing

[Debian testing autoremoval watch]

theano 0.8.2-3 is marked for autoremoval from testing on 2016-10-09

It is affected by these RC bugs:
835531: theano: FTBFS on amd64 (fail of 
test_csr_correct_output_faster_than_scipy)


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Processed: closing 835609

[Debian Bug Tracking System]

Processing commands for cont...@bugs.debian.org:

> close 835609 1.12.1+dfsg-2
Bug #835609 [src:ros-rviz] ros-rviz: FTBFS in testing (conversion to non-scalar 
type requested)
Marked as fixed in versions ros-rviz/1.12.1+dfsg-2.
Bug #835609 [src:ros-rviz] ros-rviz: FTBFS in testing (conversion to non-scalar 
type requested)
Marked Bug as done
> thanks
Stopping processing here.

Please contact me if you need assistance.
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clfft_2.12.2-1_amd64.changes ACCEPTED into unstable, unstable

[Debian FTP Masters]

Accepted:

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Thu, 01 Sep 2016 13:29:32 +0100
Source: clfft
Binary: libclfft2 libclfft-dev libclfft-doc clfft-client
Architecture: source amd64 all
Version: 2.12.2-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Ghislain Antony Vaillant 
Description:
 clfft-client - client program for clFFT
 libclfft-dev - development files for clFFT
 libclfft-doc - documentation for clFFT
 libclfft2  - OpenCL FFT library
Changes:
 clfft (2.12.2-1) unstable; urgency=medium
 .
   * New upstream release.
   * Update patch queue.
 - Refresh disable-multilib-cflags.patch.
 - Drop obsolete use-boost-dynamic-libs.patch.
   * Use Boost dynamic libraries via CMake options.
   * Rename package libclfft-bin to clfft-client.
   * Update description of binary packages.
   * Add missing Multi-Arch field for -dev and -doc.
   * Disable build of examples.
   * Minor enhancements to rules file.
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   * Use HTTPS for Format field in copyright file.
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clblas_2.10-4_amd64.changes ACCEPTED into unstable, unstable

[Debian FTP Masters]

Accepted:

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Thu, 01 Sep 2016 13:30:30 +0100
Source: clblas
Binary: libclblas2 libclblas-dev libclblas-doc clblas-client
Architecture: source amd64 all
Version: 2.10-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Ghislain Antony Vaillant 
Description:
 clblas-client - client program for clBLAS
 libclblas-dev - development files for clBLAS
 libclblas-doc - documentation for clBLAS
 libclblas2 - OpenCL BLAS library
Changes:
 clblas (2.10-4) unstable; urgency=medium
 .
   * Rename package libclblas-bin to clblas-client.
   * Update description of binary packages.
   * Disable build of examples.
   * Minor enhancements to rules file.
 - s/CMAKE_BUILD_OPTIONS/BUILD_OPTIONS.
 - Clear superfluous comments.
 - Wrap, sort and format.
   * Use HTTPS for Format field in copyright file.
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libclblas2-dbgsym_2.10-4_amd64.deb
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Processing of flint_2.5.2-9_source.changes

[Debian FTP Masters]

flint_2.5.2-9_source.changes uploaded successfully to localhost
along with the files:
  flint_2.5.2-9.dsc
  flint_2.5.2-9.debian.tar.xz

Greetings,

Your Debian queue daemon (running on host franck.debian.org)

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flint_2.5.2-9_source.changes ACCEPTED into unstable

[Debian FTP Masters]

Accepted:

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Thu, 01 Sep 2016 20:56:14 +0200
Source: flint
Binary: libflint-2.5.2 libflint-dev libflint-doc
Architecture: source
Version: 2.5.2-9
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Julien Puydt 
Description:
 libflint-2.5.2 - C library for number theory, shared library
 libflint-dev - C library for number theory, development files
 libflint-doc - Documentation for the FLINT library
Closes: 836304
Changes:
 flint (2.5.2-9) unstable; urgency=medium
 .
   * Added a patch from Dejan Latinovic to fix a MIPS issue. (Closes: #836304)
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Bug#836304: marked as done (flint: flint-arb FTBFS on testing: add_si fails with Segmentation fault on mips and arm)

[Debian Bug Tracking System]

Your message dated Fri, 02 Sep 2016 07:05:58 +
with message-id 
and subject line Bug#836304: fixed in flint 2.5.2-9
has caused the Debian Bug report #836304,
regarding flint: flint-arb FTBFS on testing: add_si fails with Segmentation 
fault on mips and arm
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
836304: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=836304
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: flint
Version: 2.5.2-8
Severity: importatnt
Tags: sid, patch
Justification: FTBFS
User: debian-m...@lists.debian.org
Usertags: mips-patch


Flint-arb FTBFS on mips and arm with following error:

> add_si../Makefile.subdirs:84: recipe for target 
> '../build/arf/test/t-add_si_RUN' failed
> make[2]: *** [../build/arf/test/t-add_si_RUN] Segmentation fault

Full log is available here:
https://buildd.debian.org/status/fetch.php?pkg=flint-arb=mipsel=2.8.1-2=1470100740
https://buildd.debian.org/status/fetch.php?pkg=flint-arb=armel=2.8.1-2=1470093777

This issue is related to count_leading_zeros implementation in longlong.h.
If the same implementation is used for i386 and amd64 (instead of existing arch 
specific implementation), the same issue will appear.

Reported issue with more details is available here:
https://github.com/fredrik-johansson/arb/issues/150


Solution is to use clz builtins.
I had proposed this solution to upstream and it was merged.
https://github.com/wbhart/flint2/issues/283


Patch that contains needed changes is attached.
If flit-arb is build against flit that is built with mentioned patch applied, 
all tests will pass.
Could you consider including attached patch?


Regards,
Dejan--- flint-2.5.2.orig/longlong.h
+++ flint-2.5.2/longlong.h
@@ -324,6 +324,39 @@
 
 #endif
 
+/* MIPS */
+#if (defined (__mips__) || defined (__arm__))
+
+#ifdef _LONG_LONG_LIMB
+#define count_leading_zeros(count,x)\
+  do {  \
+FLINT_ASSERT ((x) != 0);\
+(count) = __builtin_clzll (x);  \
+  } while (0)
+#else
+#define count_leading_zeros(count,x)\
+  do {  \
+FLINT_ASSERT ((x) != 0);\
+(count) = __builtin_clzl (x);   \
+  } while (0)
+#endif
+
+#ifdef _LONG_LONG_LIMB
+#define count_trailing_zeros(count,x)   \
+  do {  \
+FLINT_ASSERT ((x) != 0);\
+(count) = __builtin_ctzll (x);  \
+  } while (0)
+#else
+#define count_trailing_zeros(count,x)   \
+  do {  \
+FLINT_ASSERT ((x) != 0);\
+(count) = __builtin_ctzl (x);   \
+  } while (0)
+#endif
+
+#endif /* MIPS */
+
 #define udiv_qrnnd_int(q, r, n1, n0, d)\
   do {	  \
 mp_limb_t __d1, __d0, __q1, __q0, __r1, __r0, __m;			\
@@ -364,6 +397,7 @@
 (r) = __r0;\
   } while (0)
 
+#ifndef count_leading_zeros
 #define count_leading_zeros(count, x)\
   do {	\
 mp_limb_t __xr = (x);			\
@@ -386,9 +421,11 @@
 	  \
 (count) = GMP_LIMB_BITS + 1 - __a - __flint_clz_tab[__xr >> __a]; \
   } while (0)
+#endif
 
 #if !(GMP_LIMB_BITS == 64 && defined (__ia64))
 
+#ifndef count_trailing_zeros
 #define count_trailing_zeros(count, x) \
   do {	  \
 mp_limb_t __ctz_x = (x);		  \
@@ -397,6 +434,7 @@
 count_leading_zeros (__ctz_c, __ctz_x & -__ctz_x); \
 (count) = GMP_LIMB_BITS - 1 - __ctz_c;	 \
   } while (0)
+#endif
 
 #endif
 
--- End Message ---
--- Begin Message ---
Source: flint
Source-Version: 2.5.2-9

We believe that the bug you reported is fixed in the latest version of
flint, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 836...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Julien Puydt  (supplier of updated flint package)

(This message was generated automatically at their request; if you
believe that there is a problem 

apertium-ita_0.9.0~r72553-1_amd64.changes is NEW

[Debian FTP Masters]

binary:apertium-ita is NEW.
source:apertium-ita is NEW.

Your package has been put into the NEW queue, which requires manual action
from the ftpteam to process. The upload was otherwise valid (it had a good
OpenPGP signature and file hashes are valid), so please be patient.

Packages are routinely processed through to the archive, and do feel
free to browse the NEW queue[1].

If there is an issue with the upload, you will receive an email from a
member of the ftpteam.

If you have any questions, you may reply to this email.

[1]: https://ftp-master.debian.org/new.html

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ros-rviz_1.12.1+dfsg-2_source.changes ACCEPTED into unstable

[Debian FTP Masters]

Accepted:

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Format: 1.8
Date: Fri, 02 Sep 2016 10:17:34 +0200
Source: ros-rviz
Binary: librviz-dev librviz1d rviz python-rviz
Architecture: source
Version: 1.12.1+dfsg-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Jochen Sprickerhof 
Description:
 librviz-dev - Development files for the Robot OS 3D visualization tool
 librviz1d  - Library for the Robot OS 3D visualization tool
 python-rviz - Python bindings for the 3D visualization tool for Robot OS
 rviz   - 3D visualization tool for Robot OS
Changes:
 ros-rviz (1.12.1+dfsg-2) unstable; urgency=medium
 .
   * Update my email address
   * Add patch for urdfdom-headers-dev 1.0
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ros-interactive-markers_1.11.3-1_source.changes ACCEPTED into unstable

[Debian FTP Masters]

Accepted:

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Format: 1.8
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Source: ros-interactive-markers
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python-interactive-markers
Architecture: source
Version: 1.11.3-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Jochen Sprickerhof 
Description:
 libinteractive-markers-dev - Robot OS interactive_markers package - 
development files
 libinteractive-markers0d - Robot OS interactive_markers package
 python-interactive-markers - Robot OS interactive_markers python package
Changes:
 ros-interactive-markers (1.11.3-1) unstable; urgency=medium
 .
   * Bumped Standards-Version to 3.9.8, no changes needed.
   * Update Vcs URLs
   * Update my email address
   * New upstream version 1.11.3
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ros-rospack_2.3.0-4_source.changes ACCEPTED into unstable

[Debian FTP Masters]

Accepted:

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Architecture: source
Version: 2.3.0-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Jochen Sprickerhof 
Description:
 librospack-dev - Robot OS package information library header files
 librospack0d - Robot OS package information library
 rospack-tools - command-line tool for retrieving information about Robot OS 
packa
Closes: 835627
Changes:
 ros-rospack (2.3.0-4) unstable; urgency=medium
 .
   * Update URLs
   * Update my email address
   * Add Patch for FTBFS on hurd-i386.
 Thanks to Svante Signell (Closes: #835627)
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ros-rospkg_1.0.40-1_source.changes ACCEPTED into unstable

[Debian FTP Masters]

Accepted:

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Source: ros-rospkg
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Architecture: source
Version: 1.0.40-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Jochen Sprickerhof 
Description:
 python-rospkg - Robot OS package library
Changes:
 ros-rospkg (1.0.40-1) unstable; urgency=medium
 .
   * Bumped Standards-Version to 3.9.8, no changes needed.
   * Fix unit tests
   * Update Vcs URLs
   * Update my email address
   * New upstream version 1.0.40
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ros-bloom_0.5.22-1_source.changes ACCEPTED into unstable

[Debian FTP Masters]

Accepted:

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Format: 1.8
Date: Fri, 02 Sep 2016 11:02:45 +0200
Source: ros-bloom
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Architecture: source
Version: 0.5.22-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Jochen Sprickerhof 
Description:
 python-bloom - Bloom is a release automation tool from Robot OS
Changes:
 ros-bloom (0.5.22-1) unstable; urgency=medium
 .
   * Bumped Standards-Version to 3.9.8, no changes needed.
   * Update my email address
   * New upstream version 0.5.22
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Bug#835411: Packages FTBFS with new eigen3

[Philipp Huebner]

Hi,

On Wed, 24 Aug 2016 18:09:42 +0200 Anton Gladky  wrote:
> it looks like the eigen-upstream has a patch already,
> but AFAIK it does not solve all problems.
> 
> I discussed it with Philipp already and I will apply the
> patch as far as it will be ready.

the remaining issues in ceres-solver have been fixed by it's upstream,
so all I would require here is this patch to be applied:

https://bitbucket.org/eigen/eigen/commits/a89a95507d61/

Regards,
-- 
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: :'  :  pgp fp: 6719 25C5 B8CD E74A 5225  3DF9 E5CA 8C49 25E4 205F
`. `'`
  `-



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Processed: tagging 835037

[Debian Bug Tracking System]

Processing commands for cont...@bugs.debian.org:

> tags 835037 + fixed-upstream
Bug #835037 [src:ceres-solver] ceres-solver: FTBFS with eigen3 >> 3.3~beta1
Added tag(s) fixed-upstream.
> thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
835037: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=835037
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Contact ow...@bugs.debian.org with problems

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ros-geometric-shapes_0.5.1-1_source.changes REJECTED

[Debian FTP Masters]

Source-only uploads to NEW are not allowed.

===

Please feel free to respond to this email if you don't understand why
your files were rejected, or if you upload new files which address our
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Processing of apertium-srd_0.9.0~r72792-1_amd64.changes

[Debian FTP Masters]

apertium-srd_0.9.0~r72792-1_amd64.changes uploaded successfully to localhost
along with the files:
  apertium-srd_0.9.0~r72792-1.dsc
  apertium-srd_0.9.0~r72792.orig.tar.bz2
  apertium-srd_0.9.0~r72792-1.debian.tar.xz
  apertium-srd_0.9.0~r72792-1_all.deb

Greetings,

Your Debian queue daemon (running on host franck.debian.org)

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apertium-srd_0.9.0~r72792-1_amd64.changes is NEW

[Debian FTP Masters]

binary:apertium-srd is NEW.
source:apertium-srd is NEW.

Your package has been put into the NEW queue, which requires manual action
from the ftpteam to process. The upload was otherwise valid (it had a good
OpenPGP signature and file hashes are valid), so please be patient.

Packages are routinely processed through to the archive, and do feel
free to browse the NEW queue[1].

If there is an issue with the upload, you will receive an email from a
member of the ftpteam.

If you have any questions, you may reply to this email.

[1]: https://ftp-master.debian.org/new.html

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Processing of ros-rospkg_1.0.40-1_source.changes

[Debian FTP Masters]

ros-rospkg_1.0.40-1_source.changes uploaded successfully to localhost
along with the files:
  ros-rospkg_1.0.40-1.dsc
  ros-rospkg_1.0.40.orig.tar.gz
  ros-rospkg_1.0.40-1.debian.tar.xz

Greetings,

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Are you there

[Abdirizak Abdikadir]

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Bug#835627: marked as done (ros-rospack: FTBFS on hurd-i386)

[Debian Bug Tracking System]

Your message dated Fri, 02 Sep 2016 10:11:36 +
with message-id 
and subject line Bug#835627: fixed in ros-rospack 2.3.0-4
has caused the Debian Bug report #835627,
regarding ros-rospack: FTBFS on hurd-i386
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
835627: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=835627
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: ros-rospack
Version: 2.3.0-3
Severity: important
Tags: patch
User: debian-h...@lists.debian.org
Usertags: hurd

HI,

ros-rospack currently FTBFS on GNU/Hurd since 2.3.0-3 when the unit
tests were enabled. This is due to usage of PATH_MAX in
file test/test/utest.cpp. The attached patch fixes this by using
getcwd(NULL, 0) to allocate space, populate path and free it after
usage. As all Debian architectures support this usage of getcwd() no
harm would be done. All tests succeed on GNU/Hurd too.

Thanks!Index: ros-rospack-2.3.0/test/test/utest.cpp
===
--- ros-rospack-2.3.0.orig/test/test/utest.cpp
+++ ros-rospack-2.3.0/test/test/utest.cpp
@@ -231,8 +231,8 @@ int main(int argc, char **argv)
   char buf[1024];
   std::string rr = std::string(getcwd(buf, sizeof(buf))) + "/test2";
   setenv("ROS_PACKAGE_PATH", rr.c_str(), 1);
-  char path[PATH_MAX];
-  if(getcwd(path,sizeof(path)))
+  char *path = getcwd(NULL, 0);
+  if(path)
   {
 boost::filesystem::path p(path);
 p = p.parent_path();
@@ -243,6 +243,7 @@ int main(int argc, char **argv)
 setenv("PATH", newpath.c_str(), 1);
   }
 
+  free(path);
   testing::InitGoogleTest(, argv);
   return RUN_ALL_TESTS();
 }
--- End Message ---
--- Begin Message ---
Source: ros-rospack
Source-Version: 2.3.0-4

We believe that the bug you reported is fixed in the latest version of
ros-rospack, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 835...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Jochen Sprickerhof  (supplier of updated ros-rospack 
package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Fri, 02 Sep 2016 10:58:10 +0200
Source: ros-rospack
Binary: librospack-dev librospack0d rospack-tools
Architecture: source
Version: 2.3.0-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Jochen Sprickerhof 
Description:
 librospack-dev - Robot OS package information library header files
 librospack0d - Robot OS package information library
 rospack-tools - command-line tool for retrieving information about Robot OS 
packa
Closes: 835627
Changes:
 ros-rospack (2.3.0-4) unstable; urgency=medium
 .
   * Update URLs
   * Update my email address
   * Add Patch for FTBFS on hurd-i386.
 Thanks to Svante Signell (Closes: #835627)
Checksums-Sha1:
 84ef5c0c1902eea85c0fba7f8fbc4ddd05a50cc8 2374 ros-rospack_2.3.0-4.dsc
 01f90e74784b2f8d5f009ef46565c9659ffedbc5 6044 ros-rospack_2.3.0-4.debian.tar.xz
Checksums-Sha256:
 169759a15e90e978e20a92174412cf670943019aadb9bd9e7585c58cdf1473a7 2374 
ros-rospack_2.3.0-4.dsc
 d643eca16f9a8270f0e345b5787652485652bfaf3136e70bb25c210a8c2d3c23 6044 
ros-rospack_2.3.0-4.debian.tar.xz
Files:
 4cf58c89e8b4f1960ca8b06dc6c0d118 2374 libs optional ros-rospack_2.3.0-4.dsc
 7221da4a168bb4efd6ee47c40af8575b 6044 libs optional 
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Processing of ros-geometric-shapes_0.5.1-1_source.changes

[Debian FTP Masters]

ros-geometric-shapes_0.5.1-1_source.changes uploaded successfully to localhost
along with the files:
  ros-geometric-shapes_0.5.1-1.dsc
  ros-geometric-shapes_0.5.1.orig.tar.gz
  ros-geometric-shapes_0.5.1-1.debian.tar.xz

Greetings,

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