Re: [Freesurfer] Freeview does not show images

2022-10-07 Thread fsbuild 
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Did it say the driver was installed successfully?  I’m wondering if the 
driver did not install because it does not support your machines hardware for 
some reason. But it should tell you if it cannot be installed.

You can tell if the DCH driver is installed by following the instructions 
here,https://secure-web.cisco.com/1C5iHX14FwFkb0bd5IYlzilnGkZNKBRhHFB5E1e8VAvgm832QpAA9pmst0ZQuoC01uGEtlN0Qfoy-8iUOVAv0r83MvIFhsS80-v9aycte39pSTISKdutTDgKy-hUW2qUx7xQZlC_l0pzPpONAt9fSyazQZ1GnRIQAMDEESUBRNX0c-v5cahiYmnyhb-nCV1r0ZvrgDZ7ghyZbtWcGndQw6amYiwjrvnXcDvAMEq5qd7pU3QU8ZOl9LnfFOQ6-k-ZLWIW6e0Yi8IRtVSlJSwNiDgACgB4gBvastg8A-sPy18j6Cfqj7NAY_DRglVfDj6Q80iOZn7cNsef3V1nq15s3WA/https%3A%2F%2Fwww.intel.com%2Fcontent%2Fwww%2Fus%2Fen%2Fsupport%2Farticles%2F58296%2Fgraphics.html
There is more info about it 
here,https://secure-web.cisco.com/1OnUvmRVhRWfRd2WCZXsandn42tB-a7ROvNPXbkZSl_hqHPKINKCSHkLxTmBG52oxmFqNtZjYTJ4Ppsay9_RddV5-RNszenkWzdmp4HV-k_JjuxpBLReMrMuOZL81oKe1VYne_9XcnTCtTbwzqyk6E5zeTXMOjQLj9-LeBN1OjCg16d38W4e9brBF4IQ4m5PdQjQQKLE5dak8O_fvzZ6AbMssGWmc3vnGyQFRuvfHgDq6SzzD5T2doFTIUemiQkSfxIMt4N5QyFpPyk5A1dbQcglJ1XctZd5C9TUn8KHtL_PYtauBGmPBHy7agS-rlu3q/https%3A%2F%2Fwww.intel..com%2Fcontent%2Fwww%2Fus%2Fen%2Fsupport%2Farticles%2F58295%2Fgraphics.html
- R.
On Oct 7, 2022, at 06:05, Justina Lee justinale...@gmail.com 
wrote:External Email - Use 
CautionHi Ruopeng,I tried 
to run the glxgears command in the WSL Ubuntu subsystem, but it doesn't show me 
the gears. I am having the same issue as this thread linked 
here:MailScanner has detected a possible fraud attempt from 
"secure-web.cisco.com" claiming to 
behttps://secure-web.cisco.com/1NxVL-emVuHw_jOzG4gXfcbpKLhoo9hS4C5IwCTkrb4Ge9RJeQgNfYxUY1b8UhVCwRwafISyQbYMLx5-0RvvSU6ZggG_ziHWkZu0dtETp0bWIPD2HpbN6cd9K0jyPv1EBAwomGF2psP-nMqtKFGOakonOE6Q_h5y-kwI5W6pz9NkKkFvaiUlrprN5Kw4EXmO6JNwQEEw8dt3jPlAlFb2GTb8v7sMcKcBtvKJX5-yZ1wcnQudjQkqYOv4-1MPtgi-cUNyFr_ZXvY5rkay6B-wM9gX5K9w7EmXiyuHWMwtAcDEuN9kXbDMGWjIX1ffOkkcs218lhqcGDyQ2a1ZisDYd_w/https%3A%2F%2Fgithub.com%2Fmicrosoft%2Fwslg%2Fissues%2F654
 I followed the advice and downloaded the latest Intel Graphics Driver, but 
this did not seem to fix the issue for me.I also looked at the 
corresponding debian package installer in accordance with my ubuntu version, 
and the same error occurs. How can I add a 3D accelerator or GPU acceleration 
so that the glxgears command can show me the gears?Thanks for your help and 
time.Sincerely,JustinaOn Thu, Oct 6, 2022 at 3:39 PM Wang, Ruopeng 
rwa...@mgh.harvard.edu wrote:Are you able to run glxgears command? Do 
you see spinning gears?RuopengOn Oct 6, 2022, at 4:28 AM, Justina Lee 
justinale...@gmail.com 
wrote:External Email - Use 
CautionTo whom this may concern 
and can help,I am currently trying to run Freeview under the 
WindowsSubsystem Linux System. I can successfully download and open 
images, but nothingseems to be showing onmy end (see image attached 
at the end).In order to find out what is preventing the X-server from 
correctly displaying graphics, I have tried to run the $ xeyes command and the 
eyes pop up, meaning that the X-windows server is working fine.Upon checking 
the WSL Version, I am currently using the WSL version 2.I have entered the two 
commands as follows:$echo "export XDG_RUNTIME_DIR=$HOME/.xdg"  
$HOME/.bashrc$echo "export DISPLAY=:0"  $HOME/.bashrcThen I 
exited Ubuntu, and tried to run freeview again (attempting to open a data file 
T1.mgz.) This still did not produce any image in freeview, although it opened 
it up. I tried changing the window, contrast, and brightness but to no 
avail.Is there another solution?Terribly sorry and thank you so much for 
your time.Sincerely,JustinaFreeview image 
display.png___Freesurfer 
mailing listfreesur...@nmr.mgh.harvard.eduMailScanner has detected a possible 
fraud attempt from "secure-web.cisco.com" claiming to 
behttps://secure-web.cisco.com/1x2O2S2I-mf4HqnIK9_KstdCRE_wrCYlZRAFykGOfPQ3DzAXEq1u4VB41Wm4omVXkZJCypctowclP7mzCCA2g9I2ClLH90Xo_AbtFLWI5gGn9YP2wN3CVJqk2NY8Pe9Ynk0b_UjWkortSmdeEXQAfE8a95OtcNyWdR4Sa_oBIPly9uE-v-baM6cEJThYIjD1IaSulqOeIK-aqOVxZnjAG5dTRfco1tbGi8183-fAt19eY-cz8NSK-8mFGQCcj-seU8FULksI7FOc6rNUwR2BNff6QnUfh4BLFVaOgW-oy0122VupSftbfyne0EiipNUgA6XukNCc_4_bhLhyH8Cz2xQ/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer___Freesurfer
 mailing listfreesur...@nmr.mgh..harvard.eduMailScanner has detected a possible 
fraud attempt from "secure-web.cisco.com" claiming to

Re: [Freesurfer] Freeview does not show images

2022-10-07 Thread Justina Lee 
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Hi  Ruopeng,

I tried to run the glxgears command in the WSL Ubuntu subsystem, but it
doesn't show me the gears. I am having the same issue as this thread linked
here: 
https://secure-web.cisco.com/1_nwpKy6edOMjc8Fb4TT_DQsKayIHq7yz6rjZXWYrhXvOMtkPtnDTAgvyHwlJknIz0NqjN44E48l9HTzHWpxTRB7K9qfWEddgLzY-N8DwQ9LJuanknR3cqBZCSGGybx3kfCwXL0JqnlBMKd4YPRiOBQ0tvJnklmkeHvAu0bOaW_5y3ABUG-9zqwhYo-JKOs-npIB2AdvV4eRkQ6-M0I8iPV2U8PHw1JoFhE100pzdpkEHDewV_Z7VJaoHYTWjJR4LPr_DMg2vecc2aM_SIu4Zgmk3bNNQ0II7UXChxgZatN8b6T1b4ayMSM8cKseJiDTbEG_czfPEz8ArXDVdM5yDMQ/https%3A%2F%2Fgithub.com%2Fmicrosoft%2Fwslg%2Fissues%2F654
 I followed the advice
and downloaded the latest Intel Graphics Driver, but this did not seem to
fix the issue for me.

I also looked at the corresponding debian package installer in accordance
with my ubuntu version, and the same error occurs. How can I add a 3D
accelerator or GPU acceleration so that the glxgears command can show me
the gears?

Thanks for your help and time.

Sincerely,
Justina

On Thu, Oct 6, 2022 at 3:39 PM Wang, Ruopeng  wrote:

> Are you able to run glxgears command? Do you see spinning gears?
>
> Ruopeng
>
> On Oct 6, 2022, at 4:28 AM, Justina Lee  wrote:
>
> External Email - Use Caution
>
> To whom this may concern and can help,
>
> I am currently trying to run Freeview under the Windows Subsystem Linux
> System. I can successfully download and open images, but nothing seems to
> be showing on my end (see image attached at the end).
>
> In order to find out what is preventing the X-server from correctly
> displaying graphics, I have tried to run the $ xeyes command and the eyes
> pop up, meaning that the X-windows server is working fine.
>
> Upon checking the WSL Version, I am currently using the WSL version 2.
>
> I have entered the two commands as follows:
>
> $ *echo "export XDG_RUNTIME_DIR=$HOME/.xdg" >> $HOME/.bashrc*
> $ *echo "export DISPLAY=:0" >> $HOME/.bashrc*
> Then I exited Ubuntu, and tried to run freeview again (attempting to open
> a data file T1.mgz.) This still did not produce any image in freeview,
> although it opened it up. I tried changing the window, contrast, and
> brightness but to no avail.
>
> Is there another solution?
>
> Terribly sorry and thank you so much for your time.
>
> Sincerely,
> Justina
> 
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
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>
>
> ___
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contains patient information, please contact the Mass General Brigham 
Compliance

Re: [Freesurfer] Freeview does not show images

2022-10-06 Thread Wang, Ruopeng 
Are you able to run glxgears command? Do you see spinning gears?

Ruopeng

On Oct 6, 2022, at 4:28 AM, Justina Lee 
mailto:justinale...@gmail.com>> wrote:


External Email - Use Caution

To whom this may concern and can help,

I am currently trying to run Freeview under the Windows Subsystem Linux System. 
I can successfully download and open images, but nothing seems to be showing on 
my end (see image attached at the end).

In order to find out what is preventing the X-server from correctly displaying 
graphics, I have tried to run the $ xeyes command and the eyes pop up, meaning 
that the X-windows server is working fine.

Upon checking the WSL Version, I am currently using the WSL version 2.

I have entered the two commands as follows:

$ echo "export XDG_RUNTIME_DIR=$HOME/.xdg" >> $HOME/.bashrc
$ echo "export DISPLAY=:0" >> $HOME/.bashrc
Then I exited Ubuntu, and tried to run freeview again (attempting to open a 
data file T1.mgz.) This still did not produce any image in freeview, although 
it opened it up. I tried changing the window, contrast, and brightness but to 
no avail.

Is there another solution?

Terribly sorry and thank you so much for your time.

Sincerely,
Justina
___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

___
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contains patient information, please contact the Mass General Brigham 
Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline 
 .
Please note that this e-mail is not secure (encrypted).  If you do not wish to 
continue communication over unencrypted e-mail, please notify the sender of 
this message immediately.  Continuing to send or respond to e-mail after 
receiving this message means you understand and accept this risk and wish to 
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Re: [Freesurfer] Freeview does not show images

2022-10-06 Thread fsbuild 
External Email - Use Caution

I don’t think you told us what you installed for freesurfer in WSL.  The 
freesurfer installation should match the version of Ubuntu Linux that WSL 
installed.
You can check the Ubuntu OS version in the Ubuntu terminal window with,
$ cat /etc/os-releaseNAME="Ubuntu"VERSION="20.04..4 LTS (Focal Fossa)”. —- 
Ubuntu OS version = 20ID=ubuntuID_LIKE=debianPRETTY_NAME="Ubuntu 20.04.4 
LTS"VERSION_ID="20.04"HOME_URL="https://secure-web.cisco.com/1bVGj42N9EXVJFRZ7YL0IHj3ZYnjuVnNPLHNWkT-3uhiq6L7h9sN45hYiXV3Pd2V9J875qc-JBl9Tqt3UW2-YFbfENbpMYKffxCCGjQ06zKLwod7Q_JQGE4wByDfutTxeGYCmuIqtI7SzB9_uci0U9V-QpVsNxDUNY7O6guwj8kwphlSkuvBCTMIqfVNQGBtzzpsktGWscaG2P2EA1-qDf9FO8zMgdj_dAyVFJ9Im1k5JqsgNC7NsmMljgT3OXGo0Q7mPx-P0HD7xeLczNB1HHPTSPKpoLtCi8i2WDCK9BX5XQmIYzS7363K01hkUhjFoG8LeE6W-jm7kIAxmKjGU3g/https%3A%2F%2Fwww.ubuntu.com%2F"SUPPORT_URL="https://secure-web.cisco.com/12UtwR8986v4WnSkHQkzTHdLViFU2xy4D4gPieyqjFBGaUQm9SdqsxP46X32ln5PDRPOUrHicYocOH2L1hwKgbvD3w9U0VkIYbV4CTFhr6Hhf-nG5kKgj1fz-XIurMxIjURcu2gA5nuWphwwqE3ZkbtJc5Em2l6Em2rXM_Mv2hlsMTS9P3WR48Y5nkdBMkONJI824C3CsoHWluEVdL9mvzacA_M_i3BmabrSeQ0AZC_TY8_0tDgQZqLLYdI_FxemGPuGNG-8rZABngQkDjtZPbJW3yTUJrCgc-4EjIAKfaQvkA4H6wSmXbofi1e_KkuSD7R5KDW-hESL1Nqp-d1DwcA/https%3A%2F%2Fhelp.ubuntu.com%2F"BUG_REPORT_URL="https://secure-web.cisco.com/1ovllB_ySt3ww3AwjGhOIt_eu_N2HW4iWf5szA8QTOw55-PRuQZz3ZLpB4w7cxz3FrFMPPMH71GXeyyhNfXl0hvfucoA6lByiy6VU0_Gn61wilEzNPto1d7gUKGm-FIqG_iL-dlTfQuvVXqPPKNw15envffK_8vXlgDXKfU9B5sk_LqGtaSy_NnUMLobghmWkoB4fSLI-71vWMhOX15rguf4LkRNf7ZqZVdNI9J7TGLb1_FBxbcP97TQ4FnBmJqor_EUOvgjx3_ccpTyAAkjZYElwWzaVpz_v0ic0PZp9tPRitW-jqkrRYbI1AA21Dq6dFUzU2eMRjvYs8ZrtIZNnEA/https%3A%2F%2Fbugs.launchpad.net%2Fubuntu%2F"PRIVACY_POLICY_URL="https://secure-web.cisco.com/1gsSaM6y5sGY58Zoe__dEZ5uF1C7Q91HlD5GBMyNhKdRRciBtH5S1o48IydYVZJpfO4VDzGHjpxNm7cN_weTNNjndXUe-Wt_ExcsnbGitQtWH41HzTXNEr9kjBYnAC21Avcq_bECC792lqQO97bDGdh-X1ogJo4RvcMSzJzQFDLD0C1uGdANIb0skCCrS-1UaA6QcE0C2stQTchmfJpw0zqIS5VrVYWD8FSQqS4bC_EX01eSUdSmeLvv0pPOjv9ajiICZozd_7e2cjaCOH-CqfxTYt38iRuXKoA8P8vMD-HTZSfBrDTG-q4oTH2-yZkRzAN0VxYTZfe1jxneAvbnvGA/https%3A%2F%2Fwww.ubuntu.com%2Flegal%2Fterms-and-policies%2Fprivacy-policy"VERSION_CODENAME=focalUBUNTU_CODENAME=focal
With the above version info, you can use the debian package installer (.deb 
file), e.g., from 
https://secure-web.cisco.com/1suBrY-ijWwnSebRIO5a6tmmiUPrI9YyHka5F3mVaW4EnbxeV7rRdvWIOMgbVvcZqj1zwLYm7MmIFr6q5tJwIbAg1f3RqAwcy6uPcrMadB7sC3jFtmy9Qx-Rk9wWABvuRmD6mYZdeowemlWPRRwxOO1v4Voh0hsTf_JphGDQ9UPmUtm_Bc31ftltQ2ZPxaMtRKNBbFEdtYbxDMrbYxkTA51NhX5PNWukbYyKXQ6iCm5VWhzPLL6cnFnPXhqMhUu21GttqYVbuyuuyqesW1KpjInNTju23w21vzESLlu4dN3lp8IMm4SmXcUWBHJ4YoXeM/https%3A%2F%2Fsurfer..nmr.mgh.harvard.edu%2Ffswiki%2Frel7downloads,
 that matches your version of Ubuntu. For Freesurfer 7.3.2 the choices 
are:
freesurfer_ubuntu18-7.3.2_amd64.debfreesurfer_ubuntu20-7.3.2_amd64.debfreesurfer_ubuntu22-7.3.2_amd64.deb
For the output above, you would choose freesurfer_ubuntu20-7.3.2_amd64.deb to 
match the version of Ubuntu Linux.
… cd in Ubuntu linux to where you downloaded or copied in the 
freesurfer_ubuntu20-7.3.2_amd64..deb file …… and install it with ...$ sudo apt 
install ./freesurfer_ubuntu20-7.3.2_amd64.deb
… and if the install succeeds then freesurfer would be installed under 
…/usr/local/freesurfer/7.3.2
… and to remove the install above you would do …$ sudo apt remove freesurfer
If you didn’t use the “apt install” command above to install freesurfer, then I 
would remove your current copy of the ./freesurfer tree, and do the “apt 
install”. Then you could source the freesurfer setup script and try 
running freeview again.
Microsoft can change the WSL environment without notice when your Windows 
machine updates. The version of Ubuntu linux installed in WSL depends 
upon when you set it up on your machine. We try to troubleshoot issues 
users report back to us, but we can’t always remotely debug every interaction 
between WSL, different X servers (X-ming, Moba Xterm) and your machines 
graphics card.  We have written up some of workarounds at the bottom of 
this 
page,https://secure-web.cisco.com/1Wk9iTNOO9n-TGjUWv3BghCeFjAi82pV6d2_DiVsToobAk3JeVZwflclvI4UX-bexunNh4zfn2cUTgKsbqsCcQyA3h8A5mlBqdKhRa_w2nbR0RK13SVjyUWKuomeXRYT5EWIHJGYShx2_sV6OWd1zwMfUPGEPRUL0VThpkdKxzwUjFd-0s4uyLwMFszqKkVgB8Tvt8QKbllUDLHMXJarF6XeboFO1uhE5diy294c_TItL24tIgwITgkUl_uHG5bXQ3KY-U6TcyjlSQpj--lZMhaGdLlYpAlSUlDwbP-JuuN_V9-zo2Ku_9AJk2UyCNV-MKaZDfBg97tIyMeDNKtm4Ag/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FFS7_wsl_ubuntu
  But some users are not able to get a 3rd party X-server running on 
Windows to work with every graphics application they run in WSL.  A 
simpler alternative is to use the VirtualBox VM as it has both freesurfer and 
an X-server pre-installed matching the OS provided in the VM.
- R.
On Oct 6, 2022, at 04:28, Justina Lee justinale...@gmail.com 
wrote:External Email - Use 
CautionTo whom this may concern 
and can help,I am currently trying to