Re: [Paraview] Accessing a specific variable in Python Programmable Filter

2014-05-19 Thread Su, Simon M CTR USARMY ARL (US)
thanks Burlen,
-simon


From: Burlen Loring [burlen.lor...@gmail.com]
Sent: Friday, May 16, 2014 6:12 PM
To: Burlen Loring; Su, Simon M CTR USARMY ARL (US); paraview@paraview.org
Subject: Re: [Paraview] Accessing a specific variable in Python Programmable 
Filter

correction, Dave D. just pointed out to me that since PV 4.0 the shallow copy 
is no longer needed because of the VTK 6.0 pipeline improvements.

On 05/16/2014 02:07 PM, Burlen Loring wrote:
By the way, the example following that is buggy as well, when you apply an 
internal filter you first need to shallow copy the input.

I fixed both of these, although I think these examples(ones in Examples 
section) are not great ones in the first place and don't add much to the 
already pretty comprehensive examples preceding them, I  would vote to remove 
them. However, I'll leave this up to the real pv developers

On 05/16/2014 01:43 PM, Su, Simon M CTR USARMY ARL (US) wrote:
Thanks Burlen
-simon


From: Burlen Loring [blor...@lbl.govmailto:blor...@lbl.gov]
Sent: Friday, May 16, 2014 4:23 PM
To: Su, Simon M CTR USARMY ARL (US); 
paraview@paraview.orgmailto:paraview@paraview.org
Subject: Re: [Paraview] Accessing a specific variable in Python Programmable 
Filter

=

input = self.GetPolyDataInput();
output =  self.GetPolyDataOutput();

colors = vtk.vtkUnsignedCharArray();
colors.SetNumberOfComponents(3);
colors.SetName(Colors);

numPoints = input.GetNumberOfPoints()
for i in range(0, numPoints):
colors.InsertNextTuple3(255,0,0);

output=input
output.GetPointData().AddArray(colors)

===
Not sure how this got on the wiki but this is an example of what *not* to do!!

In a VTK filter one's never supposed to modify the input.

output=input
output.GetPointData().AddArray(colors)

This is exactly what's done here. Of course you're not going to find the array 
in the filter's output if you're adding it to the input!

This code can be fixed by removing the output=input line. With that change you 
should be able to see the array in downstream filters. note, in python 2 range 
actually generates a list with all the values in it, while xrange creates an 
iterator which is far more efficient. To actually use the colors you'll also 
have to uncheck the map scalars check box in the display properties.


input = self.GetPolyDataInput();

output = self.GetPolyDataOutput();

colors = vtk.vtkUnsignedCharArray();

colors.SetNumberOfComponents(3);

colors.SetName(Colors);

numPoints = input.GetNumberOfPoints()

for i in xrange(0, numPoints):

colors.InsertNextTuple3(0,255,0);

output.GetPointData().AddArray(colors)

del colors


On 05/16/2014 12:46 PM, Su, Simon M CTR USARMY ARL (US) wrote:
Hello,

After staring at http://www.paraview.org/Wiki/Python_Programmable_Filter for a 
while, the way to access the data for a specific variable name still eludes me. 
This is the python code from the wiki on Add the Colors variable to a PolyData

=

input = self.GetPolyDataInput();
output =  self.GetPolyDataOutput();

colors = vtk.vtkUnsignedCharArray();
colors.SetNumberOfComponents(3);
colors.SetName(Colors);

numPoints = input.GetNumberOfPoints()
for i in range(0, numPoints):
colors.InsertNextTuple3(255,0,0);

output=input
output.GetPointData().AddArray(colors)

===

How do I from the next filter, access the variable name Colors that I created?

Any help is much appreciated.

thanks
-simon



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[Paraview] ParaviewWeb Multiuser

2014-05-19 Thread Daniel Zuidinga

Hello,

I want to setup a server with multiuser support. Each user should have a 
specific own data directory.


Do I need Jetty launcher for this or can I achieve this only with the 
Pyhton launcher?


As far as I can see I can't setup the directory on the client so that I 
have to create app entries in the launcher.config file for each user? 
Then I could run paraview with:


|{
'sessionManagerURL':  'http://localhost:8080/paraview',
'application':  'launcher',
'node':  1024,
'secret':  'katglrt54#%dfg',
'user':  'sebastien.jourdain',
'password':  'ousdfbdxldfgh',
'app':  'launcher with parameters from user'   // here I set the app name with 
specific user paramteres saved in launcher.config?
}|


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Re: [Paraview] ParaviewWeb Multiuser

2014-05-19 Thread Ben Boeckel
On Mon, May 19, 2014 at 16:03:49 +0200, Daniel Zuidinga wrote:
 'secret': 'katglrt54#%dfg',
 'user': 'sebastien.jourdain',
 'password': 'ousdfbdxldfgh',

Hmm...might want to change these if they're real?

--Ben
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[Paraview] Change size of arrow

2014-05-19 Thread Matteo Parsani
Dear Paraview Users and Developers,
I am having some difficulties to change the size of the arrow.
Using the calculatior I have created a vector filed as

iHat*velocity_X+jHat*velocity_Y+kHat*velocity_Z

Then I have plotted it choosing 3D Glyphs.

I get huge arrow and I do not know how to change (re-scale) their size.

Any ideas?

Thank you.


-- 
Matteo
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Re: [Paraview] Compilation with Manta plugin

2014-05-19 Thread David E DeMarle
* Search the paraview bug tracker for Manta. There are a handful of known
bugs listed there that I never got around to resolving when we first made
the plugin.

* The plugin works by sending the surface geometry over to manta instead of
OpenGL for rendering. We made no attempt to hand volumes off, so I am not
surprised that volume rendering does not work. Manta's predecessor did a
great job with volume rendering (and direct isosurface rendering), so manta
might too if we do hand them off but I've never looked into whether manta
has the same features that rtrt/star-ray did.

* opacity should work, if the normal opacity control in the GUI is not
hooked up then I am thinking it is dependent on the color mode (render
single color vs color mapping) like the advanced materials are and will
only take effect with single color.

* you are probably the first person to try it on mavericks. I appreciate
the patches.

* in general the code has been stagnant since we (kitware and LANL) first
developed a couple of years ago. We've done what was necessary to keep it
up to date at ParaView release time, but there hasn't been enough interest
(either external developers or funded projects) to turn it into the
photorealistic rendering back end that it should be.



David E DeMarle
Kitware, Inc.
RD Engineer
21 Corporate Drive
Clifton Park, NY 12065-8662
Phone: 518-881-4909


On Mon, May 19, 2014 at 10:24 AM, Wolfram, Phillip J pwolf...@lanl.govwrote:

  Thanks David, I see…

  Also, should the Manta plugin work with transparency/opacity?  It
 currently does not (there was a typo in the original email).   Is there a
 listing somewhere of the known limitations of the plugin?  For example, it
 doesn’t appear to render volumes.

  I’m on OS X Mavericks (10.9) and had to modify the plugin to work.  I
 use the latest version and update the headers so it properly compiles
 (please see attached).  I’ve attached it so that it may also be considered
 for inclusion in the ParaView SuperBuild because the previous version of
 the plugin is out of date for OS X 10.9.

  I’m happy to provide additional information as useful and will submit
 the bug request after hearing back from you so that I properly include all
 the issues I’ve been having.

  Thank you!
 Phil

  --
  Phillip Wolfram, Ph.D.
  Postdoctoral Research Associate
  T-3 Fluid Dynamics and Structural Mechanics
  Climate, Ocean and Sea Ice Modeling
  Los Alamos National Laboratory
 Phone: (505) 667-7744
 Email:   pwolf...@lanl.gov




  On May 17, 2014, at 6:58 PM, David E DeMarle dave.dema...@kitware.com
 wrote:

  I don't think the rendering bug is related to the compilation warnings.
 I think it is an off by one error in the color mapping.

  Please submit a bug report and I will fix it in master.

 thanks.

 David E DeMarle
 Kitware, Inc.
 RD Engineer
 21 Corporate Drive
 Clifton Park, NY 12065-8662
 Phone: 518-881-4909


 On Fri, May 16, 2014 at 10:25 PM, Wolfram, Phillip J pwolf...@lanl.govwrote:

  Dear Paraview Users and Developers,

  Has anyone recently compiled Paraview from source with the Manta plugin,
 particularly on OS X 10.9 (Mavericks)?

  I have successfully compiled Manta, but have the compiler warnings of
 type:

  ld: warning: direct access in ___cxx_global_var_init27 to global weak
 symbol guard variable for Manta::MantaRTTIManta::Texturefloat
 ::force_initialize means the weak symbol cannot be overridden at runtime.
 This was likely caused by different translation units being compiled with
 different visibility settings.
 ld: warning: direct access in ___cxx_global_var_init28 to global weak
 symbol guard variable for Manta::MantaRTTIManta::Constantfloat ::init
 means the weak symbol cannot be overridden at runtime. This was likely
 caused by different translation units being compiled with different
 visibility settings.

  etc

  The executable appears to be working properly, but it is less clear if
 the Manta ray tracing plugin is working correctly.  For example, it does
 allow for changing opacity and there are some rendering artifacts.  The
 benefit is higher quality rendering, but if it doesn't work properly it
 clearly isn't worth it as you can see below where the OpenGL renderer is on
 the left and the Manta renderer is on the right.  Notice how there is a
 patch of red missing near the notch.

  Screen Shot 2014-05-16 at 8.19.40 PM.png


  I suspect it is a compilation issue because of the warnings but would
 greatly appreciate any ideas / suggestions from the community.  I may also
 be using the plugin incorrectly and would appreciate correction too.


  Thanks,


  Phillip



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Re: [Paraview] ParaviewWeb Multiuser

2014-05-19 Thread Sebastien Jourdain
Hi Daniel,

I would suggest to handle the data-dir argument inside a shell script that
will then depend on the user.
So instead of running a pvpython command line you run your custom script
command line.

BTW, Ben the payload example given come from the documentation and are
given for example since none of those keys are required.
So no worries about those fake password and user name. ;-)

Seb


On Mon, May 19, 2014 at 8:27 AM, Ben Boeckel ben.boec...@kitware.comwrote:

 On Mon, May 19, 2014 at 16:03:49 +0200, Daniel Zuidinga wrote:
  'secret': 'katglrt54#%dfg',
  'user': 'sebastien.jourdain',
  'password': 'ousdfbdxldfgh',

 Hmm...might want to change these if they're real?

 --Ben
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Re: [Paraview] [EXTERNAL] Change size of arrow

2014-05-19 Thread Scott, W Alan
On the properties tab, slide down and you will see Scale Mode.  Right below 
there is a checkbox (Edit).  Check that, and change the scale.  You can also 
change scale mode to be Scalar (don’t scale with the length of your vector).

Alan

From: ParaView [mailto:paraview-boun...@paraview.org] On Behalf Of Matteo 
Parsani
Sent: Monday, May 19, 2014 8:38 AM
To: paraview@paraview.org
Subject: [EXTERNAL] [Paraview] Change size of arrow

Dear Paraview Users and Developers,
I am having some difficulties to change the size of the arrow.
Using the calculatior I have created a vector filed as

iHat*velocity_X+jHat*velocity_Y+kHat*velocity_Z
Then I have plotted it choosing 3D Glyphs.
I get huge arrow and I do not know how to change (re-scale) their size.
Any ideas?

Thank you.


--
Matteo
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Re: [Paraview] [EXTERNAL] Change size of arrow

2014-05-19 Thread Matteo Parsani
Thanks for the answer, Scott.
Where do I find the properties tab?
When I plot with 3D Glyphs I do not have any property tab?

Thanks


On Mon, May 19, 2014 at 12:25 PM, Scott, W Alan wasc...@sandia.gov wrote:

  On the properties tab, slide down and you will see Scale Mode.  Right
 below there is a checkbox (Edit).  Check that, and change the scale.  You
 can also change scale mode to be Scalar (don’t scale with the length of
 your vector).



 Alan



 *From:* ParaView [mailto:paraview-boun...@paraview.org] *On Behalf Of *Matteo
 Parsani
 *Sent:* Monday, May 19, 2014 8:38 AM
 *To:* paraview@paraview.org
 *Subject:* [EXTERNAL] [Paraview] Change size of arrow



 Dear Paraview Users and Developers,

 I am having some difficulties to change the size of the arrow.
 Using the calculatior I have created a vector filed as

 iHat*velocity_X+jHat*velocity_Y+kHat*velocity_Z

 Then I have plotted it choosing 3D Glyphs.

 I get huge arrow and I do not know how to change (re-scale) their size.

 Any ideas?



 Thank you.




 --

 Matteo




-- 
Matteo
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Re: [Paraview] Change size of arrow

2014-05-19 Thread Sankhesh Jhaveri
You can scale the glyphs by applying a transform to them.
Under the Properties panel, there is a Glyph transform section that
you can use to scale glyphs.

Hope that helps.
-- 
Sankhesh Jhaveri
Research   Development Engineer
Kitware, Inc.
Phone: (518) 881 4417
Fax: (518) 371 4573 

On Mon, 2014-05-19 at 10:38 -0400, Matteo Parsani wrote:

 Dear Paraview Users and Developers,
 I am having some difficulties to change the size of the arrow.
 Using the calculatior I have created a vector filed as
 
 iHat*velocity_X+jHat*velocity_Y+kHat*velocity_Z
 
 Then I have plotted it choosing 3D Glyphs.
 
 I get huge arrow and I do not know how to change (re-scale) their size.
 
 Any ideas?
 
 Thank you.
 
 
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Re: [Paraview] [EXTERNAL] Change size of arrow

2014-05-19 Thread Scott, W Alan
Should be “on” be default.  The properties tab is where you find the big magic 
“apply” button (left side of the window).  If you accidentally turned it off, 
View/ Properties.

Alan

From: Matteo Parsani [mailto:parsani.mat...@gmail.com]
Sent: Monday, May 19, 2014 11:29 AM
To: Scott, W Alan
Cc: paraview@paraview.org
Subject: Re: [EXTERNAL] [Paraview] Change size of arrow

Thanks for the answer, Scott.
Where do I find the properties tab?
When I plot with 3D Glyphs I do not have any property tab?
Thanks

On Mon, May 19, 2014 at 12:25 PM, Scott, W Alan 
wasc...@sandia.govmailto:wasc...@sandia.gov wrote:
On the properties tab, slide down and you will see Scale Mode.  Right below 
there is a checkbox (Edit).  Check that, and change the scale.  You can also 
change scale mode to be Scalar (don’t scale with the length of your vector).

Alan

From: ParaView 
[mailto:paraview-boun...@paraview.orgmailto:paraview-boun...@paraview.org] On 
Behalf Of Matteo Parsani
Sent: Monday, May 19, 2014 8:38 AM
To: paraview@paraview.orgmailto:paraview@paraview.org
Subject: [EXTERNAL] [Paraview] Change size of arrow

Dear Paraview Users and Developers,
I am having some difficulties to change the size of the arrow.
Using the calculatior I have created a vector filed as

iHat*velocity_X+jHat*velocity_Y+kHat*velocity_Z
Then I have plotted it choosing 3D Glyphs.
I get huge arrow and I do not know how to change (re-scale) their size.
Any ideas?

Thank you.


--
Matteo



--
Matteo
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Re: [Paraview] [EXTERNAL] Change size of arrow

2014-05-19 Thread Matteo Parsani
Thanks to both!


On Mon, May 19, 2014 at 4:10 PM, Scott, W Alan wasc...@sandia.gov wrote:

  Should be “on” be default.  The properties tab is where you find the big
 magic “apply” button (left side of the window).  If you accidentally turned
 it off, View/ Properties.



 Alan



 *From:* Matteo Parsani [mailto:parsani.mat...@gmail.com]
 *Sent:* Monday, May 19, 2014 11:29 AM
 *To:* Scott, W Alan
 *Cc:* paraview@paraview.org
 *Subject:* Re: [EXTERNAL] [Paraview] Change size of arrow



 Thanks for the answer, Scott.

 Where do I find the properties tab?

 When I plot with 3D Glyphs I do not have any property tab?

 Thanks



 On Mon, May 19, 2014 at 12:25 PM, Scott, W Alan wasc...@sandia.gov
 wrote:

 On the properties tab, slide down and you will see Scale Mode.  Right
 below there is a checkbox (Edit).  Check that, and change the scale.  You
 can also change scale mode to be Scalar (don’t scale with the length of
 your vector).



 Alan



 *From:* ParaView [mailto:paraview-boun...@paraview.org] *On Behalf Of *Matteo
 Parsani
 *Sent:* Monday, May 19, 2014 8:38 AM
 *To:* paraview@paraview.org
 *Subject:* [EXTERNAL] [Paraview] Change size of arrow



 Dear Paraview Users and Developers,

 I am having some difficulties to change the size of the arrow.
 Using the calculatior I have created a vector filed as

 iHat*velocity_X+jHat*velocity_Y+kHat*velocity_Z

 Then I have plotted it choosing 3D Glyphs.

 I get huge arrow and I do not know how to change (re-scale) their size.

 Any ideas?



 Thank you.




 --

 Matteo




 --

 Matteo




-- 
Matteo
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[Paraview] Cell to point, and ghost cells

2014-05-19 Thread Scott, W Alan
I have a user that is getting visual artifacts between simulation processor 
boundaries when using cell to point.  My user is reading two files into 
ParaView.  He then runs cells to point.  He then colors by a former cell 
variable, which is now a point variable.  He is seeing artifacts at the 
boundaries of the two files.   I am only on one processor for ParaView.

These artifacts are being created because we don't have ghost cells around each 
file's data.  I tried turning piece invariant on in the cell to point filter, 
but it does nothing.

So, my questions - is this a feature or a bug?  Do we want to fix it?  How hard 
is it to fix?

Thanks,

Alan


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Re: [Paraview] Interpolate across NaN's?

2014-05-19 Thread Moreland, Kenneth
Can you be more specific by what you mean by interpolate across NaN's? A NaN 
interpolated with anything else (including NaN) is NaN. There is not much you 
can do when something is not a number. What exactly are you expecting ParaView 
to do?

-Ken

Sent from my iPad so blame autocorrect.

On May 19, 2014, at 12:59 PM, Joshua Murphy 
joshua.mur...@lasp.colorado.edumailto:joshua.mur...@lasp.colorado.edu wrote:

Hello all,

I am working on a study that involves many hundreds of model runs, and I am 
trying determine if it is possible to force Paraview to interpolate across 
NaN’s when rendering the results to a render view?

Attached  is a sample output of what I have so far.  What I would like is to 
have ParaView render across the white space (NaN’s).  The reason I would like 
to do this is quite simple: I would like to see refinements to the image as 
more and more runs finish.

The attached images shows the following:

  1.  Top Left: Course resolution (15 degree x 15 degree sampling)
  2.  Top Right: Medium Resolution (5 degree x 5 degree sampling)
  3.  Bottom Right: High Resolution (1 degree x 1 degree sampling)
  4.  The Bottom Right can be ignored. This is just feedback to me to ensure my 
algorithms are working as intended.

As you can see, the High resolution, at this time, is just a bunch of point 
values.  This is what I would like to fix.  At this point in my study, the High 
resolution and Medium resolution would ideally look the same.

If someone could help me out on how I might be able to make this so, that would 
be great!

Thanks,
Josh


exampleScreen.png
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Re: [Paraview] Interpolate across NaN's?

2014-05-19 Thread Joshua Murphy
Probably bad choice of words on my part. I would like to interpolate from/to 
the nearest valid values, filling in the missing (NaN) values with an 
interpolated value.

Sent from my iPhone

On May 19, 2014, at 16:58, Moreland, Kenneth 
kmo...@sandia.govmailto:kmo...@sandia.gov wrote:

Can you be more specific by what you mean by interpolate across NaN's? A NaN 
interpolated with anything else (including NaN) is NaN. There is not much you 
can do when something is not a number. What exactly are you expecting ParaView 
to do?

-Ken

Sent from my iPad so blame autocorrect.

On May 19, 2014, at 12:59 PM, Joshua Murphy 
joshua.mur...@lasp.colorado.edumailto:joshua.mur...@lasp.colorado.edu wrote:

Hello all,

I am working on a study that involves many hundreds of model runs, and I am 
trying determine if it is possible to force Paraview to interpolate across 
NaN’s when rendering the results to a render view?

Attached  is a sample output of what I have so far.  What I would like is to 
have ParaView render across the white space (NaN’s).  The reason I would like 
to do this is quite simple: I would like to see refinements to the image as 
more and more runs finish.

The attached images shows the following:

 1.  Top Left: Course resolution (15 degree x 15 degree sampling)
 2.  Top Right: Medium Resolution (5 degree x 5 degree sampling)
 3.  Bottom Right: High Resolution (1 degree x 1 degree sampling)
 4.  The Bottom Right can be ignored. This is just feedback to me to ensure my 
algorithms are working as intended.

As you can see, the High resolution, at this time, is just a bunch of point 
values.  This is what I would like to fix.  At this point in my study, the High 
resolution and Medium resolution would ideally look the same.

If someone could help me out on how I might be able to make this so, that would 
be great!

Thanks,
Josh


exampleScreen.png
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[Paraview] Integrate variable filter

2014-05-19 Thread Scott, W Alan
Utkarsh/Berk/All,
I have a user that wants to add up all of the forces in a dataset, not volume 
corrected.  Is there a reason that the Integrate Variable filter can't do this 
(default off)?  My user just dumped the raw data as a .csv file and read it 
into excel, which worked.  It would be nicer if ParaView did this internally.

Also, having just poked through the documentation for this filter, from that I 
could find, it does not explicitly state that the variables are being corrected 
for volume, area or length.  Documentation should be adjusted to state this.  I 
finally had to create a hacky test, along with reading the code, to find what 
this filter does.

Alan


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Re: [Paraview] Integrate variable filter

2014-05-19 Thread Andy Bauer
Hi Alan,

My question is how should the forces be added up? I'm inferring that you
mean that the point/cell data array should just be added up. It seems odd
to do it like this since small cells don't get weighted proportionally to
big cells. If you wanted to do it like this though it seems like numpy in
the python programmable filter would work fairly well for this (assuming
this isn't in parallel AND with point data).

I thought that maybe for point data you could use the Glyph filter with 2d
box glyphs with a unit size and then use the integrate attributes filter. I
didn't check if this gave the correct answer or not but theoretically it
should work.

Regards,
Andy


On Mon, May 19, 2014 at 9:43 PM, Scott, W Alan wasc...@sandia.gov wrote:

  Utkarsh/Berk/All,
 I have a user that wants to add up all of the forces in a dataset, not
 volume corrected.  Is there a reason that the Integrate Variable filter
 can’t do this (default off)?  My user just dumped the raw data as a .csv
 file and read it into excel, which worked.  It would be nicer if ParaView
 did this internally.

 Also, having just poked through the documentation for this filter, from
 that I could find, it does not explicitly state that the variables are
 being corrected for volume, area or length.  Documentation should be
 adjusted to state this.  I finally had to create a hacky test, along with
 reading the code, to find what this filter does.

 Alan



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