Re: [Paraview] About CmakeLists.txt for paraview plugin

2018-01-07 Thread Yangguang Liao
I see, yes, I will use some classes in Paraview/VTK, which mean if your
plugin use inside source you will need to build your own paraview to run it?

Thanks,
Yangguang

On Sun, Jan 7, 2018 at 6:56 AM, Utkarsh Ayachit <utkarsh.ayac...@kitware.com
> wrote:

> Doesn't your plugin need other classes from VTK/ParaView? If so, you
> can't mix and match. I am afraid you'll have to build ParaView from
> source and then compile the plugin against it.
>
> On Sun, Jan 7, 2018 at 12:20 AM, Yangguang Liao <ygl...@ucdavis.edu>
> wrote:
> > Hi,
> >
> > I used some vtkOpenGL class in my plugin. When I developed in my own
> > machine, I have paraview source which has vtkOpenGL.cmake that I can use
> to
> > include header file I need. but when I try to compile my plugin on
> Maverick,
> > it only has release paraview, which doesn't have such .cmake file. but
> > Maverick does have VTK installed. How should I modify my cmakelists.txt
> to
> > include vtkOpengl lib.
> > Thanks.
> >
> > --
> > Yangguang Liao
> > PhD. student of Computer Science Department
> > University of California, Davis
> >
> > ___
> > Powered by www.kitware.com
> >
> > Visit other Kitware open-source projects at
> > http://www.kitware.com/opensource/opensource.html
> >
> > Please keep messages on-topic and check the ParaView Wiki at:
> > http://paraview.org/Wiki/ParaView
> >
> > Search the list archives at: http://markmail.org/search/?q=ParaView
> >
> > Follow this link to subscribe/unsubscribe:
> > https://paraview.org/mailman/listinfo/paraview
> >
>



-- 
Yangguang Liao
PhD. student of Computer Science Department
University of California, Davis
___
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[Paraview] Question about build paraview

2018-01-07 Thread Yangguang Liao
Hi,

Anyone has experience build paraview on TACC Maverick or other clusters
before? I need to build my own paraview. I use superbuild to build
paraview. but everytime it stop at the step of configure paraview due to
GCC version is lower than 4.6. Maverick does have GCC 4.9 and 5.4 installed
and also have intel icc and icpc installed. When I try to change
CMAKE_CXX_COMPILER to high verion GCC it still detect GCC is lower than
4.6. Even when I try to use icc to compile it still detects GCC lower
version error. No idea how to fix. I know I should probably ask Maverick
system admin. Just wonder if anybody happen to know this issue.
Thanks.

-- 
Yangguang Liao
PhD. student of Computer Science Department
University of California, Davis
___
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Re: [Paraview] Compile Error of Paraview on Maverick

2018-01-12 Thread Yangguang Liao
Hi, Cory,

Sorry for the late reply, no clue why this email came to my trash. I tried
to builld paraview. and the problem is that paraview failed on qt compile
step due to low version of glibc.(which in Maverick is 2.13 and the minimum
is 2.14).
So I also try to get ride of GUI first, and then I successfully build
paraview. but when I want to start a pvserver, the error comes with low
glibcxx version which I think is the same problem with low version glibc in
build.
Do you know how can I fixed this?

Thanks,
Yangguang

On Wed, Jan 10, 2018 at 6:02 AM, Cory Quammen <cory.quam...@kitware.com>
wrote:

> I don't see any errors in the terminal output you've posted. Are there
> errors further back in the terminal output history?
>
> Thanks,
> Cory
>
> On Wed, Jan 10, 2018 at 12:28 AM, Yangguang Liao <ygl...@ucdavis.edu>
> wrote:
> > Hi,
> >
> > Trying to compile Paraview but get such error. I have no idea what is the
> > reason.
> >
> > Here is terminal output:
> > [  3%] Built target protobuf
> > [  3%] Building CXX object
> > ThirdParty/protobuf/vtkprotobuf/src/CMakeFiles/
> protoc_compiler.dir/google/protobuf/dynamic_message.cc.o
> > [  3%] Building CXX object
> > ThirdParty/protobuf/vtkprotobuf/src/CMakeFiles/
> protoc_compiler.dir/google/protobuf/extension_set_heavy.cc.o
> > [  3%] Building CXX object
> > ThirdParty/protobuf/vtkprotobuf/src/CMakeFiles/
> protoc_compiler.dir/google/protobuf/generated_message_reflection.cc.o
> > [  3%] Building CXX object
> > ThirdParty/protobuf/vtkprotobuf/src/CMakeFiles/
> protoc_compiler.dir/google/protobuf/message.cc.o
> > [  3%] Building CXX object
> > ThirdParty/protobuf/vtkprotobuf/src/CMakeFiles/
> protoc_compiler.dir/google/protobuf/reflection_ops.cc.o
> > [  3%] Building CXX object
> > ThirdParty/protobuf/vtkprotobuf/src/CMakeFiles/
> protoc_compiler.dir/google/protobuf/service.cc.o
> > [  3%] Building CXX object
> > ThirdParty/protobuf/vtkprotobuf/src/CMakeFiles/
> protoc_compiler.dir/google/protobuf/text_format.cc.o
> > [  3%] Building CXX object
> > ThirdParty/protobuf/vtkprotobuf/src/CMakeFiles/
> protoc_compiler.dir/google/protobuf/unknown_field_set.cc.o
> > [  3%] Building CXX object
> > ThirdParty/protobuf/vtkprotobuf/src/CMakeFiles/
> protoc_compiler.dir/google/protobuf/wire_format.cc.o
> > [  3%] Building CXX object
> > ThirdParty/protobuf/vtkprotobuf/src/CMakeFiles/
> protoc_compiler.dir/google/protobuf/io/printer.cc.o
> > [  3%] Building CXX object
> > ThirdParty/protobuf/vtkprotobuf/src/CMakeFiles/
> protoc_compiler.dir/google/protobuf/io/zero_copy_stream_impl.cc.o
> > [  3%] Building CXX object
> > ThirdParty/protobuf/vtkprotobuf/src/CMakeFiles/
> protoc_compiler.dir/google/protobuf/io/tokenizer.cc.o
> > [  4%] Building CXX object
> > ThirdParty/protobuf/vtkprotobuf/src/CMakeFiles/
> protoc_compiler.dir/google/protobuf/compiler/importer.cc.o
> > [  4%] Building CXX object
> > ThirdParty/protobuf/vtkprotobuf/src/CMakeFiles/
> protoc_compiler.dir/google/protobuf/compiler/parser.cc.o
> > [  4%] Linking CXX executable ../../../../bin/protoc
> > [  4%] Built target protoc_compiler
> > make: *** [all] Error 2
> >
> > Mu compiler is using icc and icpc. have Qt5 installed.
> > Thanks!
> > --
> > Yangguang Liao
> > PhD. student of Computer Science Department
> > University of California, Davis
> >
> > ___
> > Powered by www.kitware.com
> >
> > Visit other Kitware open-source projects at
> > http://www.kitware.com/opensource/opensource.html
> >
> > Please keep messages on-topic and check the ParaView Wiki at:
> > http://paraview.org/Wiki/ParaView
> >
> > Search the list archives at: http://markmail.org/search/?q=ParaView
> >
> > Follow this link to subscribe/unsubscribe:
> > https://paraview.org/mailman/listinfo/paraview
> >
>
>
>
> --
> Cory Quammen
> Staff R Engineer
> Kitware, Inc.
>



-- 
Yangguang Liao
PhD. student of Computer Science Department
University of California, Davis
___
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[Paraview] Error about reading .pvtk file

2018-01-03 Thread Yangguang Liao
Hi,

I am trying to read a pvtk file with data store in vtk file. when I read it
on my own local computer, paraview will always crash. but when I read it by
using paraview on remote supercomputer, it works. May I ask why? I used a
MPI supported version in my local computer. did I miss something in my
build?

-- 
Yangguang Liao
PhD. student of Computer Science Department
University of California, Davis
___
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Re: [Paraview] [EXTERNAL] Error about reading .pvtk file

2018-01-03 Thread Yangguang Liao
I don't think so. the test file is not big. and I check the memory usage of
paraview on remote machine, it is only 500MB. and My local machine should
have enough memory space.

On Wed, Jan 3, 2018 at 6:27 PM, Scott, W Alan <wasc...@sandia.gov> wrote:

> Overflowing memory?  Try looking at the amount of memory you are using on
> the cluster, then again on your local computer.  View/ Memory Inspector.
>
>
>
> Alan
>
>
>
> *From:* ParaView [mailto:paraview-boun...@paraview.org] *On Behalf Of 
> *Yangguang
> Liao
> *Sent:* Wednesday, January 3, 2018 7:26 PM
> *To:* paraview@paraview.org
> *Subject:* [EXTERNAL] [Paraview] Error about reading .pvtk file
>
>
>
> Hi,
>
>
>
> I am trying to read a pvtk file with data store in vtk file. when I read
> it on my own local computer, paraview will always crash. but when I read it
> by using paraview on remote supercomputer, it works. May I ask why? I used
> a MPI supported version in my local computer. did I miss something in my
> build?
>
>
>
> --
>
> Yangguang Liao
>
> PhD. student of Computer Science Department
>
> University of California, Davis
>



-- 
Yangguang Liao
PhD. student of Computer Science Department
University of California, Davis
___
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Re: [Paraview] [EXTERNAL] Error about reading .pvtk file

2018-01-03 Thread Yangguang Liao
I tried kitware download and my own build. both get crash. and I use
windows.

On Wed, Jan 3, 2018 at 6:53 PM, Scott, W Alan <wasc...@sandia.gov> wrote:

> Is the ParaView a kitware download?  What OS?
>
>
>
> Alan
>
>
>
> *From:* Yangguang Liao [mailto:ygl...@ucdavis.edu]
> *Sent:* Wednesday, January 3, 2018 7:52 PM
> *To:* Scott, W Alan <wasc...@sandia.gov>
> *Cc:* paraview@paraview.org
> *Subject:* Re: [EXTERNAL] [Paraview] Error about reading .pvtk file
>
>
>
> I don't think so. the test file is not big. and I check the memory usage
> of paraview on remote machine, it is only 500MB. and My local machine
> should have enough memory space.
>
>
>
> On Wed, Jan 3, 2018 at 6:27 PM, Scott, W Alan <wasc...@sandia.gov> wrote:
>
> Overflowing memory?  Try looking at the amount of memory you are using on
> the cluster, then again on your local computer.  View/ Memory Inspector.
>
>
>
> Alan
>
>
>
> *From:* ParaView [mailto:paraview-boun...@paraview.org] *On Behalf Of 
> *Yangguang
> Liao
> *Sent:* Wednesday, January 3, 2018 7:26 PM
> *To:* paraview@paraview.org
> *Subject:* [EXTERNAL] [Paraview] Error about reading .pvtk file
>
>
>
> Hi,
>
>
>
> I am trying to read a pvtk file with data store in vtk file. when I read
> it on my own local computer, paraview will always crash. but when I read it
> by using paraview on remote supercomputer, it works. May I ask why? I used
> a MPI supported version in my local computer. did I miss something in my
> build?
>
>
>
> --
>
> Yangguang Liao
>
> PhD. student of Computer Science Department
>
> University of California, Davis
>
>
>
>
>
> --
>
> Yangguang Liao
>
> PhD. student of Computer Science Department
>
> University of California, Davis
>



-- 
Yangguang Liao
PhD. student of Computer Science Department
University of California, Davis
___
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Re: [Paraview] Segmentation fault when loading representation plugin on Linux paraview

2018-01-23 Thread Yangguang Liao
I run this paraview on TACC Maverick, which I have no access to debug
build. But I run the same plugin on my Windows Paraview build and there is
no such error. How could I fix it?
Thanks

On Tue, Jan 23, 2018 at 10:49 AM, Utkarsh Ayachit <
utkarsh.ayac...@kitware.com> wrote:

> My guess would be that you're accessing a nullptr in
> `vtkLIC3DRepresentation::AddToView`. I'd recommend doing a debug build
> of ParaView, and then attaching a debugger to confirm and fix.
>
> Utkarsh
>
> On Mon, Jan 22, 2018 at 8:18 PM, Yangguang Liao <ygl...@ucdavis.edu>
> wrote:
> > Hi,
> >
> > I get some segment fault when I try to run my plugin in Linux paraview
> while
> > there is no error in Windows paraview.
> > I can only run static version of paraview, but I track the segmentation
> > fault.
> >
> > Program received signal SIGSEGV, Segmentation fault.
> > 0x2aaabd07d336 in vtkViewport::HasViewProp(vtkProp*) ()
> >from
> > /opt/apps/intel15/mvapich2_2_1/paraview/5.4.1/lib/paraview-
> 5.4/libvtkRenderingCore-pv5.4.so.1
> > Missing separate debuginfos, use: debuginfo-install
> > paraview-intel15-mvapich2_2_1-5.4.1-1.x86_64
> > (gdb) where
> > #0  0x2aaabd07d336 in vtkViewport::HasViewProp(vtkProp*) ()
> >from
> > /opt/apps/intel15/mvapich2_2_1/paraview/5.4.1/lib/paraview-
> 5.4/libvtkRenderingCore-pv5.4.so.1
> > #1  0x2aaabd07d2fa in vtkViewport::AddViewProp(vtkProp*) ()
> >from
> > /opt/apps/intel15/mvapich2_2_1/paraview/5.4.1/lib/paraview-
> 5.4/libvtkRenderingCore-pv5.4.so.1
> > #2  0x2aaae66d6041 in vtkLIC3DRepresentation::AddToView(vtkView*) ()
> >from
> > /work/03501/ygliao/maverick/Paraview3DLICPlugin_0/build/
> libLIC3DRepresentation.so
> > #3  0x2fea6a64 in vtkView::AddRepresentation(
> vtkDataRepresentation*)
> > ()
> >from
> > /opt/apps/intel15/mvapich2_2_1/paraview/5.4.1/lib/paraview-
> 5.4/libvtkViewsCore-pv5.4.so.1
> > #4  0x2f4731ab in vtkCompositeRepresentation::AddToView(vtkView*)
> ()
> >from
> > /opt/apps/intel15/mvapich2_2_1/paraview/5.4.1/lib/paraview-5.4/
> libvtkPVClientServerCoreRendering-pv5.4.so.1
> > #5  0x2f493760 in vtkPVCompositeRepresentation::
> AddToView(vtkView*)
> > ()
> >from
> > /opt/apps/intel15/mvapich2_2_1/paraview/5.4.1/lib/paraview-5.4/
> libvtkPVClientServerCoreRendering-pv5.4.so.1
> > #6  0x2fea6a64 in vtkView::AddRepresentation(
> vtkDataRepresentation*)
> > ()
> >from
> > /opt/apps/intel15/mvapich2_2_1/paraview/5.4.1/lib/paraview-
> 5.4/libvtkViewsCore-pv5.4.so.1
> > #7  0x2db99b36 in vtkViewCommand(vtkClientServerInterpreter*,
> > vtkObjectBase*, char const*, vtkClientServerStream const&,
> > vtkClientServerStream&, void*)
> >
> > I don't why this only happens in Linux. Anyone could help me figure out?
> >
> > --
> > Yangguang Liao
> > PhD. student of Computer Science Department
> > University of California, Davis
> >
> > ___
> > Powered by www.kitware.com
> >
> > Visit other Kitware open-source projects at
> > http://www.kitware.com/opensource/opensource.html
> >
> > Please keep messages on-topic and check the ParaView Wiki at:
> > http://paraview.org/Wiki/ParaView
> >
> > Search the list archives at: http://markmail.org/search/?q=ParaView
> >
> > Follow this link to subscribe/unsubscribe:
> > https://paraview.org/mailman/listinfo/paraview
> >
>



-- 
Yangguang Liao
PhD. student of Computer Science Department
University of California, Davis
___
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[Paraview] Segmentation fault when loading representation plugin on Linux paraview

2018-01-22 Thread Yangguang Liao
Hi,

I get some segment fault when I try to run my plugin in Linux paraview
while there is no error in Windows paraview.
I can only run static version of paraview, but I track the segmentation
fault.

Program received signal SIGSEGV, Segmentation fault.
0x2aaabd07d336 in vtkViewport::HasViewProp(vtkProp*) ()
   from
/opt/apps/intel15/mvapich2_2_1/paraview/5.4.1/lib/paraview-5.4/libvtkRenderingCore-pv5.4.so.1
Missing separate debuginfos, use: debuginfo-install
paraview-intel15-mvapich2_2_1-5.4.1-1.x86_64
(gdb) where
#0  0x2aaabd07d336 in vtkViewport::HasViewProp(vtkProp*) ()
   from
/opt/apps/intel15/mvapich2_2_1/paraview/5.4.1/lib/paraview-5.4/libvtkRenderingCore-pv5.4.so.1
#1  0x2aaabd07d2fa in vtkViewport::AddViewProp(vtkProp*) ()
   from
/opt/apps/intel15/mvapich2_2_1/paraview/5.4.1/lib/paraview-5.4/libvtkRenderingCore-pv5.4.so.1
#2  0x2aaae66d6041 in vtkLIC3DRepresentation::AddToView(vtkView*) ()
   from
/work/03501/ygliao/maverick/Paraview3DLICPlugin_0/build/libLIC3DRepresentation.so
#3  0x2fea6a64 in
vtkView::AddRepresentation(vtkDataRepresentation*) ()
   from
/opt/apps/intel15/mvapich2_2_1/paraview/5.4.1/lib/paraview-5.4/libvtkViewsCore-pv5.4.so.1
#4  0x2f4731ab in vtkCompositeRepresentation::AddToView(vtkView*) ()
   from
/opt/apps/intel15/mvapich2_2_1/paraview/5.4.1/lib/paraview-5.4/libvtkPVClientServerCoreRendering-pv5.4.so.1
#5  0x2f493760 in vtkPVCompositeRepresentation::AddToView(vtkView*)
()
   from
/opt/apps/intel15/mvapich2_2_1/paraview/5.4.1/lib/paraview-5.4/libvtkPVClientServerCoreRendering-pv5.4.so.1
#6  0x2fea6a64 in
vtkView::AddRepresentation(vtkDataRepresentation*) ()
   from
/opt/apps/intel15/mvapich2_2_1/paraview/5.4.1/lib/paraview-5.4/libvtkViewsCore-pv5.4.so.1
#7  0x2db99b36 in vtkViewCommand(vtkClientServerInterpreter*,
vtkObjectBase*, char const*, vtkClientServerStream const&,
vtkClientServerStream&, void*)

I don't why this only happens in Linux. Anyone could help me figure out?

-- 
Yangguang Liao
PhD. student of Computer Science Department
University of California, Davis
___
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Re: [Paraview] Segmentation fault when loading representation plugin on Linux paraview

2018-01-23 Thread Yangguang Liao
​I'd like to share, the code works well on Paraview version
fb13726dbfdcb5479c393720abaf8234edd42609
(version on Dec 1 2017), The latest has changed some source code, and I'm
working on fix it.
Thanks.
​
 Paraview3DLICPlugin.zip
<https://drive.google.com/a/ucdavis.edu/file/d/1toVCur-Iie9khbPjMFJXueUwB15UJsxn/view?usp=drive_web>
​


On Tue, Jan 23, 2018 at 10:56 AM, Utkarsh Ayachit <
utkarsh.ayac...@kitware.com> wrote:

> Maybe if you share the code for vtkLIC3DRepresentation I may be able
> to offer suggestions. You could also try getting a access to some
> other linux machine on which you should be able to reproduce the
> issue.
>
> On Tue, Jan 23, 2018 at 1:53 PM, Yangguang Liao <ygl...@ucdavis.edu>
> wrote:
> > I run this paraview on TACC Maverick, which I have no access to debug
> build.
> > But I run the same plugin on my Windows Paraview build and there is no
> such
> > error. How could I fix it?
> > Thanks
> >
> > On Tue, Jan 23, 2018 at 10:49 AM, Utkarsh Ayachit
> > <utkarsh.ayac...@kitware.com> wrote:
> >>
> >> My guess would be that you're accessing a nullptr in
> >> `vtkLIC3DRepresentation::AddToView`. I'd recommend doing a debug build
> >> of ParaView, and then attaching a debugger to confirm and fix.
> >>
> >> Utkarsh
> >>
> >> On Mon, Jan 22, 2018 at 8:18 PM, Yangguang Liao <ygl...@ucdavis.edu>
> >> wrote:
> >> > Hi,
> >> >
> >> > I get some segment fault when I try to run my plugin in Linux paraview
> >> > while
> >> > there is no error in Windows paraview.
> >> > I can only run static version of paraview, but I track the
> segmentation
> >> > fault.
> >> >
> >> > Program received signal SIGSEGV, Segmentation fault.
> >> > 0x2aaabd07d336 in vtkViewport::HasViewProp(vtkProp*) ()
> >> >from
> >> >
> >> > /opt/apps/intel15/mvapich2_2_1/paraview/5.4.1/lib/paraview-
> 5.4/libvtkRenderingCore-pv5.4.so.1
> >> > Missing separate debuginfos, use: debuginfo-install
> >> > paraview-intel15-mvapich2_2_1-5.4.1-1.x86_64
> >> > (gdb) where
> >> > #0  0x2aaabd07d336 in vtkViewport::HasViewProp(vtkProp*) ()
> >> >from
> >> >
> >> > /opt/apps/intel15/mvapich2_2_1/paraview/5.4.1/lib/paraview-
> 5.4/libvtkRenderingCore-pv5.4.so.1
> >> > #1  0x2aaabd07d2fa in vtkViewport::AddViewProp(vtkProp*) ()
> >> >from
> >> >
> >> > /opt/apps/intel15/mvapich2_2_1/paraview/5.4.1/lib/paraview-
> 5.4/libvtkRenderingCore-pv5.4.so.1
> >> > #2  0x2aaae66d6041 in vtkLIC3DRepresentation::AddToView(vtkView*)
> ()
> >> >from
> >> >
> >> > /work/03501/ygliao/maverick/Paraview3DLICPlugin_0/build/
> libLIC3DRepresentation.so
> >> > #3  0x2fea6a64 in
> >> > vtkView::AddRepresentation(vtkDataRepresentation*)
> >> > ()
> >> >from
> >> >
> >> > /opt/apps/intel15/mvapich2_2_1/paraview/5.4.1/lib/paraview-
> 5.4/libvtkViewsCore-pv5.4.so.1
> >> > #4  0x2f4731ab in
> >> > vtkCompositeRepresentation::AddToView(vtkView*) ()
> >> >from
> >> >
> >> > /opt/apps/intel15/mvapich2_2_1/paraview/5.4.1/lib/paraview-5.4/
> libvtkPVClientServerCoreRendering-pv5.4.so.1
> >> > #5  0x2f493760 in
> >> > vtkPVCompositeRepresentation::AddToView(vtkView*)
> >> > ()
> >> >from
> >> >
> >> > /opt/apps/intel15/mvapich2_2_1/paraview/5.4.1/lib/paraview-5.4/
> libvtkPVClientServerCoreRendering-pv5.4.so.1
> >> > #6  0x2fea6a64 in
> >> > vtkView::AddRepresentation(vtkDataRepresentation*)
> >> > ()
> >> >from
> >> >
> >> > /opt/apps/intel15/mvapich2_2_1/paraview/5.4.1/lib/paraview-
> 5.4/libvtkViewsCore-pv5.4.so.1
> >> > #7  0x2db99b36 in vtkViewCommand(vtkClientServerInterpreter*,
> >> > vtkObjectBase*, char const*, vtkClientServerStream const&,
> >> > vtkClientServerStream&, void*)
> >> >
> >> > I don't why this only happens in Linux. Anyone could help me figure
> out?
> >> >
> >> > --
> >> > Yangguang Liao
> >> > PhD. student of Computer Science Department
> >> > University of California, Davis
> >> >
> >> > ___
> >> > Powered by www.kitware.com
> >> >
>