Bug#765511: hdf5: Resource exhaustion in HDF5 1.8.13

2014-10-17 Thread Jim Garrison

On 10/17/2014 12:49 AM, Gilles Filippini wrote:
Could you please gite a try at the not yet uploaded release 
1.8.13+docs-15 I've just pushed into the git repo (branch master)? 
Thanks in advance, _g. 


Thanks so much for looking into this and integrating a patch into the 
git repository.


Is there a set of step-by-step instructions somewhere for trying it?  
After reading https://wiki.debian.org/PackagingWithGit I tried running 
git-buildpackage from the cloned repository, but it fails eventually 
because I don't have your GPG secret key on my machine.


Now signing changes and any dsc files...
 signfile hdf5_1.8.13+docs-15.dsc Gilles Filippini p...@debian.org
gpg: skipped Gilles Filippini p...@debian.org: secret key not available
gpg: /tmp/debsign.DpcZISY5/hdf5_1.8.13+docs-15.dsc: clearsign failed: 
secret key not available

debsign: gpg error occurred!  Aborting
debuild: fatal error at line 1283:
running debsign failed
gbp:error: 'debuild -i -I' failed: it exited with 29

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Bug#765511: hdf5: Resource exhaustion in HDF5 1.8.13

2014-10-17 Thread Jim Garrison
On 10/17/2014 10:56 AM, Sylvestre Ledru wrote:
 On 17/10/2014 18:55, Jim Garrison wrote:
 On 10/17/2014 12:49 AM, Gilles Filippini wrote:
 Could you please gite a try at the not yet uploaded release
 1.8.13+docs-15 I've just pushed into the git repo (branch master)?
 Thanks in advance, _g. 

 Thanks so much for looking into this and integrating a patch into the
 git repository.

 Is there a set of step-by-step instructions somewhere for trying it? 
 After reading https://wiki.debian.org/PackagingWithGit I tried running
 git-buildpackage from the cloned repository, but it fails eventually
 because I don't have your GPG secret key on my machine.

 Now signing changes and any dsc files...
  signfile hdf5_1.8.13+docs-15.dsc Gilles Filippini p...@debian.org
 gpg: skipped Gilles Filippini p...@debian.org: secret key not
 available
 gpg: /tmp/debsign.DpcZISY5/hdf5_1.8.13+docs-15.dsc: clearsign failed:
 secret key not available
 debsign: gpg error occurred!  Aborting
 debuild: fatal error at line 1283:
 running debsign failed
 gbp:error: 'debuild -i -I' failed: it exited with 29

 The packages are still generated.
 You can ignore this error! You will still find the deb (../*deb)

Thanks, I had looked recursively in each subdirectory but had not
thought to look in the parent directory! :)

At this point every one of my failing tests has been running for 30
minutes (much longer than before), and not one of them has failed.  So,
I think it is very likely that the bug has been fixed.

Thanks again!
Jim

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Bug#765511: hdf5: Resource exhaustion in HDF5 1.8.13

2014-10-15 Thread Jim Garrison
Source: hdf5
Version: 1.8.13
Severity: important

Dear Maintainer,

There seems to be a resource exhaustion issue with HDF5 1.8.13, which
was not present in version 1.8.12.  I first reported this issue with
the h5py package at https://github.com/h5py/h5py/issues/480 and the
issue has been reproduced using other libraries, including (at the
very least) pytables.  The upstream HDF5 issue is HDFFV-8917.
Unfortunately the HDF5 group does not have a public issue tracker, so
I really have little information about the exact nature of this bug
beyond what I first reported in the h5py issue tracker.  However, I
wanted to bring it to your attention since this error renders HDF5
1.8.13 unusable for me, and it would be a shame to see jessie's freeze
date approach when it is using a version with a known regression.


-- System Information:
Debian Release: jessie/sid
  APT prefers testing
  APT policy: (500, 'testing')
Architecture: amd64 (x86_64)
Foreign Architectures: i386

Kernel: Linux 3.14-1-amd64 (SMP w/4 CPU cores)
Locale: LANG=en-US.UTF-8, LC_CTYPE=en-US.UTF-8 (charmap=UTF-8) (ignored: LC_ALL 
set to en_US.UTF-8)
Shell: /bin/sh linked to /bin/dash

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