Bug#890905: jabref: does not launch

2018-02-23 Thread Mauricio Calvao 
abRef-3.8.2.jar:?]
at
java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:313) ~[?:?]
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:764) ~[?:?]
at java.awt.EventQueue.access$500(EventQueue.java:97) ~[?:?]
at java.awt.EventQueue$3.run(EventQueue.java:717) ~[?:?]
at java.awt.EventQueue$3.run(EventQueue.java:711) ~[?:?]
at java.security.AccessController.doPrivileged(Native Method) ~[?:?]
at
java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:89)
~[?:?]
at java.awt.EventQueue.dispatchEvent(EventQueue.java:734) ~[?:?]
at
java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:199)
[?:?]
at
java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:124)
[?:?]
at
java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:113)
[?:?]
at
java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:109) [?:?]
at
java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101) [?:?]
at java.awt.EventDispatchThread.run(EventDispatchThread.java:90)
[?:?]
Caused by: java.lang.ClassNotFoundException: javax.xml.bind.JAXBException
at
jdk.internal.loader.BuiltinClassLoader.loadClass(BuiltinClassLoader.java:582)
~[?:?]
at
jdk.internal.loader.ClassLoaders$AppClassLoader.loadClass(ClassLoaders.java:185)
~[?:?]
at java.lang.ClassLoader.loadClass(ClassLoader.java:496) ~[?:?]
... 17 more


On Fri, Feb 23, 2018 at 7:14 AM, gregor herrmann <gre...@debian.org> wrote:

> On Tue, 20 Feb 2018 10:13:46 -0300, Mauricio Calvao wrote:
>
> > I just clicked the jabref icon, from the KDE applications launch
> > menu and also tried just plain typing jabref in a terminal.
> >
> > After clicking the icon, a temporary widget on the lower panel
> > showed up, but then vanished and jabref's gui never was spawned.
> > After the command line trial, the following message arose:
> >
> > 10:00:18.907 [AWT-EventQueue-0] ERROR net.sf.jabref.FallbackExceptionHandler
> - Uncaught exception Occurred in Thread[AWT-EventQueue-0,6,main]
> > java.lang.NoClassDefFoundError: javax/xml/bind/JAXBException
> > at net.sf.jabref.logic.importer.ImportFormatReader.
> resetImportFormats(ImportFormatReader.java:56) ~[JabRef-3.8.2.jar:?]
> > at net.sf.jabref.JabRefMain.start(JabRefMain.java:78)
> ~[JabRef-3.8.2.jar:?]
> > at net.sf.jabref.JabRefMain.lambda$main$0(JabRefMain.java:40)
> ~[JabRef-3.8.2.jar:?]
> > at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:313)
> ~[?:?]
> > at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:764)
> ~[?:?]
> > at java.awt.EventQueue.access$500(EventQueue.java:97) ~[?:?]
> > at java.awt.EventQueue$3.run(EventQueue.java:717) ~[?:?]
> > at java.awt.EventQueue$3.run(EventQueue.java:711) ~[?:?]
> > at java.security.AccessController.doPrivileged(Native Method)
> ~[?:?]
> > at java.security.ProtectionDomain$JavaSecurityAccessImpl.
> doIntersectionPrivilege(ProtectionDomain.java:89) ~[?:?]
> > at java.awt.EventQueue.dispatchEvent(EventQueue.java:734) ~[?:?]
> > at 
> > java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:199)
> [?:?]
> > at 
> > java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:124)
> [?:?]
> > at 
> > java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:113)
> [?:?]
> > at 
> > java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:109)
> [?:?]
> > at 
> > java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
> [?:?]
> > at java.awt.EventDispatchThread.run(EventDispatchThread.java:90)
> [?:?]
> > Caused by: java.lang.ClassNotFoundException:
> javax.xml.bind.JAXBException
> > at 
> > jdk.internal.loader.BuiltinClassLoader.loadClass(BuiltinClassLoader.java:582)
> ~[?:?]
> > at jdk.internal.loader.ClassLoaders$AppClassLoader.
> loadClass(ClassLoaders.java:185) ~[?:?]
> > at java.lang.ClassLoader.loadClass(ClassLoader.java:496) ~[?:?]
> > ... 17 more
>
> Thanks for your bug report. This is indeed not the expected outcome
> :)
>
> As JabRef still works for me, we need to find out what's different
> for you.
>
> > ii  openjdk-8-jre [java8-runtime] 8u151-b12-1
> > ii  openjdk-9-jre [java8-runtime] 9.0.1+11-1
> > ii  oracle-java8-jdk [java8-runtime]  8u11
>
> > ii  openjdk-8-jdk:amd64   8u151-b12-1 amd64
>  OpenJDK Development Ki

Bug#890905: additional info: dpkg -l "openjdk*" and update-alternatives --display java

2018-02-20 Thread Mauricio Calvao 
The listing from the terminal command dkpg -l "openjdk*" is:

Desired=Unknown/Install/Remove/Purge/Hold
|
Status=Not/Inst/Conf-files/Unpacked/halF-conf/Half-inst/trig-aWait/Trig-pend
|/ Err?=(none)/Reinst-required (Status,Err: uppercase=bad)
||/ Name  Version
ArchitectureDescription
+++-=-===-===-===
un  openjdk-6-jre 
  (no description available)
un  openjdk-6-jre-headless
  (no description available)
un  openjdk-7-jre 
  (no description available)
un  openjdk-8-demo
  (no description available)
ii  openjdk-8-jdk:amd64   8u151-b12-1
amd64   OpenJDK Development Kit (JDK)
ii  openjdk-8-jdk-headless:amd64  8u151-b12-1
amd64   OpenJDK Development Kit (JDK) (headless)
ii  openjdk-8-jre:amd64   8u151-b12-1
amd64   OpenJDK Java runtime, using Hotspot JIT
ii  openjdk-8-jre-headless:amd64  8u151-b12-1
amd64   OpenJDK Java runtime, using Hotspot JIT (headless)
un  openjdk-8-source  
  (no description available)
un  openjdk-9-demo
  (no description available)
ii  openjdk-9-jdk:amd64   9.0.1+11-1
amd64   OpenJDK Development Kit (JDK)
ii  openjdk-9-jdk-headless:amd64  9.0.1+11-1
amd64   OpenJDK Development Kit (JDK) (headless)
ii  openjdk-9-jre:amd64   9.0.1+11-1
amd64   OpenJDK Java runtime, using Hotspot JIT
ii  openjdk-9-jre-headless:amd64  9.0.1+11-1
amd64   OpenJDK Java runtime, using Hotspot JIT (headless)
un  openjdk-9-source  
  (no description available)

The listing from the terminal command update-alternatives --display java is:

java - auto mode
  link best version is /usr/lib/jvm/java-9-openjdk-amd64/bin/java
  link currently points to /usr/lib/jvm/java-9-openjdk-amd64/bin/java
  link java is /usr/bin/java
  slave java.1.gz is /usr/share/man/man1/java.1.gz
/usr/lib/jvm/java-8-openjdk-amd64/jre/bin/java - priority 1081
  slave java.1.gz: /usr/lib/jvm/java-8-openjdk-amd64/jre/man/man1/java.1.gz
/usr/lib/jvm/java-9-openjdk-amd64/bin/java - priority 1091
  slave java.1.gz: /usr/lib/jvm/java-9-openjdk-amd64/man/man1/java.1.gz
/usr/lib/jvm/oracle-java8-jdk-amd64/jre/bin/java - priority 318
  slave java.1.gz: /usr/lib/jvm/oracle-java8-jdk-amd64/man/man1/java.1.gz

-- 
###
Prof. Mauricio Ortiz Calvao
Federal University of Rio de Janeiro
Institute of Physics, P O Box 68528
CEP 21941-972 Rio de Janeiro, RJ
Brazil

Email: o...@if.ufrj.br
Phone: (55)(21)39387483
Homepage: http://www.if.ufrj.br/~orca
###
__
This is the maintainer address of Debian's Java team
. 
Please use
debian-j...@lists.debian.org for discussions and questions.

Bug#890905: jabref: does not launch

2018-02-20 Thread Mauricio Calvao 
Package: jabref
Version: 3.8.2+ds-2
Severity: important

Dear Maintainer,

*** Reporter, please consider answering these questions, where appropriate ***

   * What led up to the situation?
   Trying to use jabref either from console or from icon
   * What exactly did you do (or not do) that was effective (or
 ineffective)?

I just clicked the jabref icon, from the KDE applications launch menu and also 
tried just plain typing jabref in a terminal.

   * What was the outcome of this action?

After clicking the icon, a temporary widget on the lower panel showed up, but 
then vanished and jabref's gui never was spawned. After the command line trial, 
the following message arose:
10:00:18.907 [AWT-EventQueue-0] ERROR net.sf.jabref.FallbackExceptionHandler - 
Uncaught exception Occurred in Thread[AWT-EventQueue-0,6,main]
java.lang.NoClassDefFoundError: javax/xml/bind/JAXBException
at 
net.sf.jabref.logic.importer.ImportFormatReader.resetImportFormats(ImportFormatReader.java:56)
 ~[JabRef-3.8.2.jar:?]
at net.sf.jabref.JabRefMain.start(JabRefMain.java:78) 
~[JabRef-3.8.2.jar:?]
at net.sf.jabref.JabRefMain.lambda$main$0(JabRefMain.java:40) 
~[JabRef-3.8.2.jar:?]
at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:313) 
~[?:?]
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:764) ~[?:?]
at java.awt.EventQueue.access$500(EventQueue.java:97) ~[?:?]
at java.awt.EventQueue$3.run(EventQueue.java:717) ~[?:?]
at java.awt.EventQueue$3.run(EventQueue.java:711) ~[?:?]
at java.security.AccessController.doPrivileged(Native Method) ~[?:?]
at 
java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:89)
 ~[?:?]
at java.awt.EventQueue.dispatchEvent(EventQueue.java:734) ~[?:?]
at 
java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:199)
 [?:?]
at 
java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:124) 
[?:?]
at 
java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:113)
 [?:?]
at 
java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:109) [?:?]
at 
java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101) [?:?]
at java.awt.EventDispatchThread.run(EventDispatchThread.java:90) [?:?]
Caused by: java.lang.ClassNotFoundException: javax.xml.bind.JAXBException
at 
jdk.internal.loader.BuiltinClassLoader.loadClass(BuiltinClassLoader.java:582) 
~[?:?]
at 
jdk.internal.loader.ClassLoaders$AppClassLoader.loadClass(ClassLoaders.java:185)
 ~[?:?]
at java.lang.ClassLoader.loadClass(ClassLoader.java:496) ~[?:?]
... 17 more


   * What outcome did you expect instead?

Of course, I expected jabref's gui to launch!

*** End of the template - remove these template lines ***


-- System Information:
Debian Release: buster/sid
  APT prefers unstable
  APT policy: (600, 'unstable')
Architecture: amd64 (x86_64)

Kernel: Linux 4.15.2-towo.1-siduction-amd64 (SMP w/4 CPU cores; PREEMPT)
Locale: LANG=en_US.utf8, LC_CTYPE=en_US.utf8 (charmap=UTF-8), LANGUAGE=en_US 
(charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)

Versions of packages jabref depends on:
ii  default-jre [java8-runtime]   2:1.8-59
ii  java-wrappers 0.2
ii  libandroid-json-java  7.0.0+r33-1
ii  libantlr3-runtime-java3.5.2-8
ii  libantlr4-runtime-java4.5.3-2
ii  libbcprov-java1.59-1
ii  libcommons-cli-java   1.4-1
ii  libcommons-lang3-java 3.5-1
ii  libcommons-logging-java   1.2-2
ii  libglazedlists-java   1.9.1-2
ii  libguava-java 19.0-1
ii  libhttpasyncclient-java   4.1.3-1
ii  libhttpclient-java4.5.5-1
ii  libhttpmime-java  4.5.5-1
ii  libjava-string-similarity-java0.24-1
ii  libjempbox-java   1:1.8.13-2
ii  libjgoodies-common-java   1.8.1-2
ii  libjgoodies-forms-java1.9.0-3
ii  libjgoodies-looks-java2.7.0-2
ii  libjhlabs-filters-java2.0.235-3
ii  libjsoup-java 1.10.2-1
ii  liblog4j2-java2.8.2-2
ii  libmicroba-java   1:0.4.4.3-5
ii  libpdfbox-java1:1.8.13-2
ii  libreoffice-java-common   1:6.0.1-1
ii  libspin-java  1.5+dfsg-8
ii  libswing-layout-java  1.0.4-4
ii  libswingx-java1:1.6.2-2
ii  libunirest-java-java  1.4.8-2
ii  openjdk-8-jre [java8-runtime] 8u151-b12-1
ii  openjdk-9-jre [java8-runtime] 9.0.1+11-1
ii  oracle-java8-jdk [java8-runtime]  8u11

Versions of packages jabref recommends:
ii  libmysql-java5.1.44-1
ii  libpostgresql-jdbc-java  9.4.1212-1
ii  libreoffice-writer   1:6.0.1-1
ii  xdg-utils