after, x_arg
= "before", y_arg = "after")
28. └─base::loadNamespace(x)
29. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
30. └─base (local) withOneRestart(expr, restarts[[1L]])
31. └─base (local) doWithOneRestart(return(expr), restart)
[ FAIL 2 | WARN 1 | SKIP 0 | PASS 0 ]
Error: Test failures
Execution halted
1 error ✖ | 0 warnings ✔ | 1 note ✖
Error: R CMD check found ERRORs
Execution halted
Exited with status 1.
From: Ivan Krylov
Sent: Tuesday, April 23, 2024 1:46 AM
To: Petersen, Isaac T
Cc: r-package-devel@r-project.org
Subject: [External] Re: [R-pkg-devel] Package submission to CRAN not passing
incoming checks
[You don't often get email from ikry...@disroot.org. Learn why this is
important at https://aka.ms/LearnAboutSenderIdentification ]
Dear Isaac,
В Mon, 22 Apr 2024 17:00:27 +
"Petersen, Isaac T" пишет:
> This my first post--I read the posting guidelines, but my apologies
> in advance if I make a mistake.
Welcome to R-package-devel! You're doing just fine.
> 1) The first note <...> includes the contents of the LICENSE file
It's multiple NOTEs in a trench coat. Kasper has addressed the "large
version components" and the DOIs interpreted as file URIs, but there's
one more.
The ' + file LICENSE' syntax has two uses: (1)
for when the terms of the license is a template, requiring the author
of the software to substitute some information (e.g. the year and the
copyright holder for MIT) and (2) for when a package puts additional
restrictions on the base license.
(Hmm. Only case (2) is currently described at
<https://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fcran.r-project.org%2Fdoc%2Fmanuals%2FR-exts.html%23Licensing=05%7C02%7Cisaac-t-petersen%40uiowa.edu%7C3a0f2254132f4cd6205608dc63610e82%7C1bc445959aba4fc3b8ec7b94a5586fdc%7C1%7C1%7C638494515735410190%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C4%7C%7C%7C=rm%2Fp2SXR6CN%2FysfsiP1i2acQcrYlxPfUgxMF6NQdvlA%3D=0<https://cran.r-project.org/doc/manuals/R-exts.html#Licensing>>;
case
(1) is only described inside the license files.)
The CRAN team has expressed a preference for the package authors not to
put 2 twisty little copies of standard licenses, all slightly
different, inside their packages. Since you're not restricting CC BY
4.0, it's enough to say 'License: CC BY 4.0'. If you'd like a full copy
of the license text in your source code repository, that's fine, but
you'll need to list the file in .Rbuildignore:
https://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fcran.r-project.org%2Fdoc%2Fmanuals%2FR-exts.html%23Building-package-tarballs=05%7C02%7Cisaac-t-petersen%40uiowa.edu%7C3a0f2254132f4cd6205608dc63610e82%7C1bc445959aba4fc3b8ec7b94a5586fdc%7C1%7C1%7C638494515735420011%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C4%7C%7C%7C=kslE9klwZD%2BvBHX3I%2FkBewpNLnr14cgnxOc%2FQIZBLR0%3D=0<https://cran.r-project.org/doc/manuals/R-exts.html#Building-package-tarballs>
Speaking of the Creative Commons license: the choice of a license for
your code is obviously yours, but Creative Commons themselves recommend
against using their licenses for software:
<https://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fcreativecommons.org%2Ffaq%2F%23can-i-apply-a-creative-commons-license-to-software=05%7C02%7Cisaac-t-petersen%40uiowa.edu%7C3a0f2254132f4cd6205608dc63610e82%7C1bc445959aba4fc3b8ec7b94a5586fdc%7C1%7C1%7C638494515735426275%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C4%7C%7C%7C=lwWu6xa1gXzXUU%2BqwxU5CLM1cMkO9jqefYr1T5L%2FyGo%3D=0<https://creativecommons.org/faq/#can-i-apply-a-creative-commons-license-to-software>>.
I can't recommend you a license - that would be politically motivated
meddling in foreign affairs - but the lists linked by the CC FAQ and
Writing R Extensions section 1.1.2 should provide a good starting point.
> Here are the results from win-builder:
> https://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwin-builder.r-project.org%2Fincoming_pretest%2Fpetersenlab_0.1.2-9033_20240415_212322%2F=05%7C02%7Cisaac-t-petersen%40uiowa.edu%7C3a0f2254132f4cd6205608dc63610e82%7C1bc445959aba4fc3b8ec7b94a5586fdc%7C1%7C1%7C638494515735430793%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C4%7C%7C%7C=S%2F18W%2Bh15GDI5dQRlBlvqhPVoEeP67MAwSIAsnIw4yw%3D=0<https://win-builder.r-project.org/incoming_pretest/petersenlab_0.1.2-9033_20240415_212322/>
There is one more NOTE:
>> * checking examples ... [437s/438s] NOTE
>> Examples with CPU (user + system) or elapsed time > 5s
>>user system elapsed
>> load_or_install 349.410 37.410 387.233
>> vwReg35.199 0.379
