Re: [R-sig-Debian] r-base-dev not installing in Ubuntu 16.04
On 13 June 2018 at 20:54, Robin Lovelace wrote: | I have recently re-installed R on my Ubuntu system to get R 3.5 and found | this to have worked: | | # you may need to remove incumbent repos e.g. with: | sudo apt-add-repository --remove ppa:marutter/rrutter | | # add new repos | sudo apt-add-repository ppa:marutter/rrutter3.5 # for base R | sudo apt-add-repository ppa:marutter/c2d4u4.5 # for pkgs - this saved me | lots of time installing my set-up *Very* good point. Given that what Michael does is outside of the distro, we are lacking some bells and whistles -- and moreover some check and balances I get thrown at me from within the distro and its quality checks. So one thing we had run into was inconsistent versioning so the "old" PPAs may have shadowed the new one with the dh-r version wanted -- but 'hidden' behind a higher version number. (This can happens as the version strings get expanded with Ubuntu distro strings added etc pp). So an implicit "reset" by only looking at one pair is a very good ides, | | At the end of it these are the only R-related repos I have: | | apt policy | grep 3.5 | | # 500 http://ppa.launchpad.net/marutter/rrutter3.5/ubuntu xenial/main i386 | Packages | # release | v=16.04,o=LP-PPA-marutter-rrutter3.5,a=xenial,n=xenial,l=RRutter | v3.5,c=main,b=i386 | # 500 http://ppa.launchpad.net/marutter/rrutter3.5/ubuntu xenial/main amd64 | Packages | # release | v=16.04,o=LP-PPA-marutter-rrutter3.5,a=xenial,n=xenial,l=RRutter | v3.5,c=main,b=amd64 | # 500 http://ppa.launchpad.net/marutter/c2d4u3.5/ubuntu xenial/main i386 | Packages | # release | v=16.04,o=LP-PPA-marutter-c2d4u3.5,a=xenial,n=xenial,l=cran2deb4ubuntu_3.5,c=main,b=i386 | # 500 http://ppa.launchpad.net/marutter/c2d4u3.5/ubuntu xenial/main amd64 | Packages | # release | v=16.04,o=LP-PPA-marutter-c2d4u3.5,a=xenial,n=xenial,l=cran2deb4ubuntu_3.5,c=main,b=amd64 | | Hope this helps. Please add-to this advice anyone who's more experienced | than me in this. Now why does a serious man like you still run 16.04 though? ;-) | Thanks to all involved in getting this working and documented. Our pleasure. Dirk | Robin | | On Wed, Jun 13, 2018 at 10:22 AM, Syed Murtuza baker < | syed.murtuzaba...@manchester.ac.uk> wrote: | | > Hello All, | > When I try to install r-base-dev on my Ubuntu 16.04 it gives me the | > following error | > | > r-base-dev : Depends: dh-r but it is not installable | > E: Unable to correct problems, you have held broken packages. | > | > I added the following two repos | > | > deb https://mirrors.ebi.ac.uk/CRAN/bin/linux/ubuntu xenial-cran35 | > deb http://uk-mirrors.evowise.com/ubuntu/ bionic-backports main | > restricted universe | > | > but still giving error. Could you please suggest me how to fix it. | > | > Thank you. | > | > Best Regards, | > Syed | > | > | > | > Dr. Syed Murtuza Baker | > Bioinformatics Core Facility | > Faculty of Biology, Medicine & Health | > The University of Manchester | > | > | > [[alternative HTML version deleted]] | > | > ___ | > R-SIG-Debian mailing list | > R-SIG-Debian@r-project.org | > https://stat.ethz.ch/mailman/listinfo/r-sig-debian | > | | [[alternative HTML version deleted]] | | ___ | R-SIG-Debian mailing list | R-SIG-Debian@r-project.org | https://stat.ethz.ch/mailman/listinfo/r-sig-debian -- http://dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org ___ R-SIG-Debian mailing list R-SIG-Debian@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-debian
Re: [R-sig-Debian] Problem with Ubuntu bionic R 3.5
Great. Many thanks. BTW: Synaptic is refusing to install R due to this issue. Uli Am 13.06.2018 um 14:32 schrieb Dirk Eddelbuettel: On 13 June 2018 at 14:17, Luke Tudge wrote: | I have this too on Ubuntu Bionic. The English error message is: | | W: Conflicting distribution: https://cran.rstudio.com/bin/linux/ubuntu | bionic-cran35/ InRelease (expected bionic-cran35/ but got bionic) | | Though the error doesn't seem to prevent use of the repository. I could | apt-get install R 3.5 no problem. Ok -- that may just be a label in the metadata file. Michael is currently traveling but I am sure he'll take a look. Dirk ___ R-SIG-Debian mailing list R-SIG-Debian@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-debian
Re: [R-sig-Debian] Problem with Ubuntu bionic R 3.5
On 13 June 2018 at 14:17, Luke Tudge wrote: | I have this too on Ubuntu Bionic. The English error message is: | | W: Conflicting distribution: https://cran.rstudio.com/bin/linux/ubuntu | bionic-cran35/ InRelease (expected bionic-cran35/ but got bionic) | | Though the error doesn't seem to prevent use of the repository. I could | apt-get install R 3.5 no problem. Ok -- that may just be a label in the metadata file. Michael is currently traveling but I am sure he'll take a look. Dirk -- http://dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org ___ R-SIG-Debian mailing list R-SIG-Debian@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-debian
Re: [R-sig-Debian] Problem with Ubuntu bionic R 3.5
I have this too on Ubuntu Bionic. The English error message is: W: Conflicting distribution: https://cran.rstudio.com/bin/linux/ubuntu bionic-cran35/ InRelease (expected bionic-cran35/ but got bionic) Though the error doesn't seem to prevent use of the repository. I could apt-get install R 3.5 no problem. On Wed, Jun 13, 2018 at 2:04 PM, Ulrich Leuchtmann < ulrich.leuchtm...@t-online.de> wrote: > I ran into a problem installing R 3.5 on Ubuntu Bionic Beaver. In file > /etc/apt/sources.list I added the repository entry "deb > https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/". But > "apt-get update" now produces an error message: > > W: Konflikt bei Distribution: https://cloud.r-project.org/bin/linux/ubuntu > bionic-cran35/ InRelease (bionic-cran35/ erwartet, aber bionic bekommen) > > In english, this should read something like > > W: conflict in distribution: https://cloud.r-project.org/bin/linux/ubuntu > bionic-cran35/ InRelease (bionic-cran35/ expected, but bionic received) > > It seems as if the new bionic R-3.5 distribution is not set up properly. I > wonder if the "Codename" entry or the "Suite" entry in the > /bin/linux/ubuntu/bionic-cran35/InRelease file should read > "bionic-cran35" instead of "bionic". > > Uli > > ___ > R-SIG-Debian mailing list > R-SIG-Debian@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-debian > [[alternative HTML version deleted]] ___ R-SIG-Debian mailing list R-SIG-Debian@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-debian
[R-sig-Debian] Problem with Ubuntu bionic R 3.5
I ran into a problem installing R 3.5 on Ubuntu Bionic Beaver. In file /etc/apt/sources.list I added the repository entry "deb https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/". But "apt-get update" now produces an error message: W: Konflikt bei Distribution: https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/ InRelease (bionic-cran35/ erwartet, aber bionic bekommen) In english, this should read something like W: conflict in distribution: https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/ InRelease (bionic-cran35/ expected, but bionic received) It seems as if the new bionic R-3.5 distribution is not set up properly. I wonder if the "Codename" entry or the "Suite" entry in the /bin/linux/ubuntu/bionic-cran35/InRelease file should read "bionic-cran35" instead of "bionic". Uli ___ R-SIG-Debian mailing list R-SIG-Debian@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-debian
[R-sig-Debian] r-base-dev not installing in Ubuntu 16.04
Hello All, When I try to install r-base-dev on my Ubuntu 16.04 it gives me the following error r-base-dev : Depends: dh-r but it is not installable E: Unable to correct problems, you have held broken packages. I added the following two repos deb https://mirrors.ebi.ac.uk/CRAN/bin/linux/ubuntu xenial-cran35 deb http://uk-mirrors.evowise.com/ubuntu/ bionic-backports main restricted universe but still giving error. Could you please suggest me how to fix it. Thank you. Best Regards, Syed Dr. Syed Murtuza Baker Bioinformatics Core Facility Faculty of Biology, Medicine & Health The University of Manchester [[alternative HTML version deleted]] ___ R-SIG-Debian mailing list R-SIG-Debian@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-debian
