Re: [R-SIG-Mac] [External] summary() suddently producing weird NULL: values for factors and character attributes
> On 14 Dec 2020, at 23:07 , John Helly via R-SIG-Mac
> wrote:
>
> Aloha.
>
> Don't know if this is uniquely a Mac issue or not. I will try to test on a
> Linux distro later today. \\\
>
> In the meantime, here's the additional info. Thanks for the responses. I
> created a test subset of the input data so it is just the first DAUCO value
> subset (i.e., 00125).
Not likely Mac at all. In a reasonably clean session (on a Mac), I see
> dd <- structure(list(DAUCO = c("00125", "00125", "00125", "00125",
+ "00125", "00125"), Longitude = c(-121.41667, -121.375, -121.3,
+ -121.29167, -121.25, -121.20833), Latitude = c(41.958334,
+ 41.958334, 41.958334, 41.958334, 41.958334, 41.958334
+ ), Precipitation = c(63.1469993591, 63.6969985962, 65.7460021973,
+ 69.4150009155, 74.0780029297, 80.4290008545), Year = c(1895,
+ 1895, 1895, 1895, 1895, 1895), Month = c(1, 1, 1, 1, 1, 1)), row.names = c(NA,
+ 6L), class = "data.frame")
> summary(dd)
DAUCO Longitude Latitude Precipitation
Length:6 Min. :-121.4 Min. :41.96 Min. :63.15
Class :character 1st Qu.:-121.4 1st Qu.:41.96 1st Qu.:64.21
Mode :character Median :-121.3 Median :41.96 Median :67.58
Mean :-121.3 Mean :41.96 Mean :69.42
3rd Qu.:-121.3 3rd Qu.:41.96 3rd Qu.:72.91
Max. :-121.2 Max. :41.96 Max. :80.43
Year Month
Min. :1895 Min. :1
1st Qu.:1895 1st Qu.:1
Median :1895 Median :1
Mean :1895 Mean :1
3rd Qu.:1895 3rd Qu.:1
Max. :1895 Max. :1
So do check that summary.data.frame in your setup is the original in
namespace:base, and also that you don't have something defining a summary
method for character vectors e.g. a summary.character function, but I suppose
there could be a S4 method as well.
-pd
>
> In looking at the output of utils, perhaps there is some kind of
> inter-library conflict for summary? Don't know how to look for multiple
> function names (yet).
>
> J.
>
>
> * == R code and output
>
>
> PRISM= read.table(PRISM_INPUT,header=TRUE, sep=',',
> colClasses=c('character','numeric','numeric','numeric','numeric','numeric'))
> ...
>
> > dput(head(PRISM))
> structure(list(DAUCO = c("00125", "00125", "00125", "00125",
> "00125", "00125"), Longitude = c(-121.41667, -121.375, -121.3,
> -121.29167, -121.25, -121.20833), Latitude = c(41.958334,
> 41.958334, 41.958334, 41.958334, 41.958334, 41.958334
> ), Precipitation = c(63.1469993591, 63.6969985962, 65.7460021973,
> 69.4150009155, 74.0780029297, 80.4290008545), Year = c(1895,
> 1895, 1895, 1895, 1895, 1895), Month = c(1, 1, 1, 1, 1, 1)), row.names = c(NA,
> 6L), class = "data.frame")
> >
>
>
> > utils::sessionInfo()
> R version 4.0.3 (2020-10-10)
> Platform: x86_64-apple-darwin17.0 (64-bit)
> Running under: macOS Catalina 10.15.7
>
> Matrix products: default
> BLAS:
> /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRblas.dylib
> LAPACK:
> /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRlapack.dylib
>
> locale:
> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
>
> attached base packages:
> [1] stats graphics grDevices utils datasets methods base
>
> other attached packages:
> [1] reshape_0.8.8 plyr_1.8.6ggplot2_3.3.2
>
> loaded via a namespace (and not attached):
> [1] Rcpp_1.0.4.6 pillar_1.4.4 DEoptimR_1.0-8compiler_4.0.3
> RColorBrewer_1.1-2
> [6] iterators_1.0.12 digest_0.6.25 lifecycle_0.2.0 tibble_3.0.1
>gtable_0.3.0
> [11] nlme_3.1-149 lattice_0.20-41 pkgconfig_2.0.3 rlang_0.4.6
> foreach_1.5.0
> [16] Matrix_1.2-18 parallel_4.0.3 ergm_3.10.4 coda_0.19-3
> withr_2.2.0
> [21] dplyr_1.0.0 generics_0.0.2 vctrs_0.3.1
> networkDynamic_0.10.1 trust_0.1-8
> [26] grid_4.0.3tidyselect_1.1.0 deSolve_1.28
> robustbase_0.93-6 glue_1.4.1
> [31] R6_2.4.1 farver_2.0.3 purrr_0.3.4 magrittr_1.5
> codetools_0.2-16
> [36] scales_1.1.1 ellipsis_0.3.1 MASS_7.3-53
> lpSolve_5.6.15colorspace_1.4-1
> [41] ape_5.4 labeling_0.3 network_1.16.0lazyeval_0.2.2
> doParallel_1.0.15
> [46] EpiModel_1.8.0munsell_0.5.0 tergm_3.6.1
> statnet.common_4.3.0 crayon_1.3.4
> >
>
> On 12/13/20 18:22, Richard M. Heiberger wrote:
>> please send to the list the output from both:
>>
>> dput(head(P2))
>>
>> utils::sessionInfo()
>>
>> This is the Macintosh list. Is this specifically a Macintosh problem?
>>
>>
>>
>> On Sun, Dec 13, 2020 at 6:32 PM John Helly via R-SIG-Mac <
>> r-sig-mac@r-project.org> wrote:
>>
>>>
Re: [R-SIG-Mac] [External] summary() suddently producing weird NULL: values for factors and character attributes
Aloha.
Don't know if this is uniquely a Mac issue or not. I will try to test
on a Linux distro later today. \\\
In the meantime, here's the additional info. Thanks for the responses.
I created a test subset of the input data so it is just the first DAUCO
value subset (i.e., 00125).
In looking at the output of utils, perhaps there is some kind of
inter-library conflict for summary? Don't know how to look for
multiple function names (yet).
J.
* == R code and output
PRISM = read.table(PRISM_INPUT,header=TRUE, sep=',',
colClasses=c('character','numeric','numeric','numeric','numeric','numeric'))
...
> dput(head(PRISM))
structure(list(DAUCO = c("00125", "00125", "00125", "00125",
"00125", "00125"), Longitude = c(-121.41667, -121.375, -121.3,
-121.29167, -121.25, -121.20833), Latitude = c(41.958334,
41.958334, 41.958334, 41.958334, 41.958334, 41.958334
), Precipitation = c(63.1469993591, 63.6969985962, 65.7460021973,
69.4150009155, 74.0780029297, 80.4290008545), Year = c(1895,
1895, 1895, 1895, 1895, 1895), Month = c(1, 1, 1, 1, 1, 1)), row.names =
c(NA,
6L), class = "data.frame")
>
> utils::sessionInfo()
R version 4.0.3 (2020-10-10)
Platform: x86_64-apple-darwin17.0 (64-bit)
Running under: macOS Catalina 10.15.7
Matrix products: default
BLAS:
/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRblas.dylib
LAPACK:
/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRlapack.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] reshape_0.8.8 plyr_1.8.6 ggplot2_3.3.2
loaded via a namespace (and not attached):
[1] Rcpp_1.0.4.6 pillar_1.4.4 DEoptimR_1.0-8
compiler_4.0.3 RColorBrewer_1.1-2
[6] iterators_1.0.12 digest_0.6.25 lifecycle_0.2.0
tibble_3.0.1 gtable_0.3.0
[11] nlme_3.1-149 lattice_0.20-41 pkgconfig_2.0.3
rlang_0.4.6 foreach_1.5.0
[16] Matrix_1.2-18 parallel_4.0.3 ergm_3.10.4
coda_0.19-3 withr_2.2.0
[21] dplyr_1.0.0 generics_0.0.2 vctrs_0.3.1
networkDynamic_0.10.1 trust_0.1-8
[26] grid_4.0.3 tidyselect_1.1.0 deSolve_1.28
robustbase_0.93-6 glue_1.4.1
[31] R6_2.4.1 farver_2.0.3 purrr_0.3.4
magrittr_1.5 codetools_0.2-16
[36] scales_1.1.1 ellipsis_0.3.1 MASS_7.3-53
lpSolve_5.6.15 colorspace_1.4-1
[41] ape_5.4 labeling_0.3 network_1.16.0
lazyeval_0.2.2 doParallel_1.0.15
[46] EpiModel_1.8.0 munsell_0.5.0 tergm_3.6.1
statnet.common_4.3.0 crayon_1.3.4
>
On 12/13/20 18:22, Richard M. Heiberger wrote:
please send to the list the output from both:
dput(head(P2))
utils::sessionInfo()
This is the Macintosh list. Is this specifically a Macintosh problem?
On Sun, Dec 13, 2020 at 6:32 PM John Helly via R-SIG-Mac <
r-sig-mac@r-project.org> wrote:
Aloha.
For the past few weeks, maybe 6 or more, I've been getting strange results
from the summary() function for data.frames. Has anyone else noticed
something like this? I don't think I've done anything to cause this but
cannot find anything to attribute it to. Example below. It lists every
row as a value in the data frame attribute DAUCO. Similar behavior found
with other read.table results using syntax below.
PRISM=
read.table(PRISM_INPUT,header=TRUE,stringsAsFactors=TRUE,sep=',',
colClasses=c('character','numeric','numeric','numeric','numeric','numeric'))
P2 is a subset of PRISM.
J.
--
John Helly, University of California, San Diego / San Diego Supercomputer
Center / Scripps Institution of Oceanography / 760 840 8660 mobile /
http://www.sdsc.edu/~hellyj
ORCID ID: orcid.org/-0002-3779-0603
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--
John Helly, University of California, San Diego / San Diego Supercomputer
Center / Scripps Institution of Oceanography / 760 840 8660 mobile /
http://www.sdsc.edu/~hellyj
ORCID ID: orcid.org/-0002-3779-0603
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Re: [R-SIG-Mac] [External] summary() suddently producing weird NULL: values for factors and character attributes
please send to the list the output from both:
dput(head(P2))
utils::sessionInfo()
This is the Macintosh list. Is this specifically a Macintosh problem?
On Sun, Dec 13, 2020 at 6:32 PM John Helly via R-SIG-Mac <
r-sig-mac@r-project.org> wrote:
> Aloha.
>
> For the past few weeks, maybe 6 or more, I've been getting strange results
> from the summary() function for data.frames. Has anyone else noticed
> something like this? I don't think I've done anything to cause this but
> cannot find anything to attribute it to. Example below. It lists every
> row as a value in the data frame attribute DAUCO. Similar behavior found
> with other read.table results using syntax below.
>
>
> PRISM=
> read.table(PRISM_INPUT,header=TRUE,stringsAsFactors=TRUE,sep=',',
>
> colClasses=c('character','numeric','numeric','numeric','numeric','numeric'))
>
> P2 is a subset of PRISM.
>
>
>
> J.
>
> --
>
> John Helly, University of California, San Diego / San Diego Supercomputer
> Center / Scripps Institution of Oceanography / 760 840 8660 mobile /
> http://www.sdsc.edu/~hellyj
> ORCID ID: orcid.org/-0002-3779-0603
>
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> R-SIG-Mac mailing list
> R-SIG-Mac@r-project.org
> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
>
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