subject:"\[R\-SIG\-Mac\] Problem with Devel version \(R 3.6\) for Mac OS X"

Re: [R-SIG-Mac] Problem with Devel version (R 3.6) for Mac OS X

2019-04-15 Thread Simon Urbanek

Thanks - there was a bug in the sync script that synchronizes binaries from the 
build machines to the webserver (created when we stopped syncing mavericks 
binaries) so that the binaries were not correctly synced with the web server. 
Hence a stale .pkg and tar balls were on the webserver. It should be fixed now.

Thanks,
Simon


> On Apr 15, 2019, at 15:39, peter dalgaard  wrote:
> 
> I can confirm this. This time, also the tarball seems out of sync. Simon?
> 
> -pd
> 
>> On 15 Apr 2019, at 21:21 , Pages, Herve  wrote:
>> 
>> I have a similar problem. Today https://mac.r-project.org/ says:
>> 
>>  R-3.6-branch
>>  3.6.0 beta
>>  (2019/04/14, r76394)
>> 
>> but after downloading and installing it I got:
>> 
>>  R version 3.6.0 alpha (2019-04-09 r76363)
>> 
>> Thanks,
>> H.
>> 
>> On 4/11/19 08:11, Bryan Hanson wrote:
>>> Sorry if I was not clear.  I downloaded R-3.6-branch-el-capitan-signed.pkg 
>>> from 
>>> https://urldefense.proofpoint.com/v2/url?u=https-3A__mac.r-2Dproject.org_=DwIFaQ=eRAMFD45gAfqt84VtBcfhQ=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA=oFNo_QwM9UeW-_-oCb3ONvUkqd9XfbLSErM0_0cPZfs=tOYTB-iEp3DlgJ-5SEny_fPYOJHf_rO6qqg9TtJuIqk=
>>>  (redirects from r.research.att.com 
>>> ),
>>>  which is the binary  + GUI with installer.  Once it installed, the start 
>>> up message said it was r76245, but the web site said r76363.
>>> 
>>> Bryan
>>> 
 On Apr 11, 2019, at 10:41 AM, peter dalgaard  wrote:
 
 Nit: 3.6.x is not the devel version at this point (even if unreleased). 
 Dunno why there is no actual R-devel (3.7.x) binaries.
 
 However, the tarball does have (in Rversion.h)
 
 #define R_SVN_REVISION 76363
 
 and SVN-REVISION likewise
 
 are you seeing something different with the .pkg version?
 
 -pd
 
 
 
> On 11 Apr 2019, at 16:09 , Bryan Hanson  wrote:
> 
> Thanks Simon for getting that build running again.  I’m not sure if it 
> matters, but the website says the current version is r76363 but what was 
> downloaded was r76245.
> 
> Bryan
> 
>> On Apr 11, 2019, at 8:30 AM, Simon Urbanek  
>> wrote:
>> 
>> Elizabeth,
>> 
>> yes, if the status say FAILED then you cannot install that R version 
>> since it doesn't work. However, the current nightly build shows OK so 
>> you please try that one.
>> 
>> Cheers,
>> Simon
>> 
>> 
>>> On Apr 8, 2019, at 7:38 PM, Elizabeth Purdom 
>>>  wrote:
>>> 
>>> Hello,
>>> 
>>> I am wanting to download the development version for R. I have Mac OS X 
>>> 11.6 and I usually go to 
>>> https://urldefense.proofpoint.com/v2/url?u=http-3A__r.research.att.com_=DwIFaQ=eRAMFD45gAfqt84VtBcfhQ=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA=oFNo_QwM9UeW-_-oCb3ONvUkqd9XfbLSErM0_0cPZfs=ehDMrFC-4v3rt9_SEm-qgPJvcGrOE-QzaN7v9dUoa78=
>>>  and download a dmg from there. However, the devel version is listed as 
>>>  3.5.2 (2018/12/20, r75870), not 3.6. When I downloaded it anyway, I 
>>> couldn’t use the development version of bioconductor because I didn’t 
>>> have the right R.
>>> 
>>> Also, the R.app for that dmg did not work (only the command line 
>>> worked), with a message that I should check to make sure I have the 
>>> right OS (see full report below). The website just says el-capitan, 
>>> which I do have. (the log for the development version also says make 
>>> FAILED).
>>> 
>>> I feel like somehow I’m getting a non-updated version of a mirror or 
>>> something.
>>> 
>>> Thanks for any help,
>>> Elizabeth Purdom
>>> 
>>> -
>>> Associate Professor
>>> Department of Statistics, UC Berkeley
>>> 
>>> (510) 642-6154 (o) | (510) 642-7892 (f) | epur...@stat.berkeley.edu
>>> Mailing: 367 Evans Hall, Berkeley, CA 94720-3860
>>> Office: 433 Evans Hall
>>> 
>>> 
>>> System Software Overview:
>>> 
>>> System Version: OS X 10.11.6 (15G22010)
>>> Kernel Version: Darwin 15.6.0
>>> 
>>> 
>>> Error message:
>>> 
>>> Process:   R [56142]
>>> Path:  /Applications/R.app/Contents/MacOS/R
>>> Identifier:org.R-project.R

Re: [R-SIG-Mac] Problem with Devel version (R 3.6) for Mac OS X

2019-04-15 Thread Pages, Herve

I have a similar problem. Today https://mac.r-project.org/ says:

   R-3.6-branch
   3.6.0 beta
   (2019/04/14, r76394)

but after downloading and installing it I got:

   R version 3.6.0 alpha (2019-04-09 r76363)

Thanks,
H.

On 4/11/19 08:11, Bryan Hanson wrote:
> Sorry if I was not clear.  I downloaded R-3.6-branch-el-capitan-signed.pkg 
> from 
> https://urldefense.proofpoint.com/v2/url?u=https-3A__mac.r-2Dproject.org_=DwIFaQ=eRAMFD45gAfqt84VtBcfhQ=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA=oFNo_QwM9UeW-_-oCb3ONvUkqd9XfbLSErM0_0cPZfs=tOYTB-iEp3DlgJ-5SEny_fPYOJHf_rO6qqg9TtJuIqk=
>  
> 
>  (redirects from r.research.att.com 
> ),
>  which is the binary  + GUI with installer.  Once it installed, the start up 
> message said it was r76245, but the web site said r76363.
>
> Bryan
>
>> On Apr 11, 2019, at 10:41 AM, peter dalgaard  wrote:
>>
>> Nit: 3.6.x is not the devel version at this point (even if unreleased). 
>> Dunno why there is no actual R-devel (3.7.x) binaries.
>>
>> However, the tarball does have (in Rversion.h)
>>
>> #define R_SVN_REVISION 76363
>>
>> and SVN-REVISION likewise
>>
>> are you seeing something different with the .pkg version?
>>
>> -pd
>>
>>
>>
>>> On 11 Apr 2019, at 16:09 , Bryan Hanson  wrote:
>>>
>>> Thanks Simon for getting that build running again.  I’m not sure if it 
>>> matters, but the website says the current version is r76363 but what was 
>>> downloaded was r76245.
>>>
>>> Bryan
>>>
 On Apr 11, 2019, at 8:30 AM, Simon Urbanek  
 wrote:

 Elizabeth,

 yes, if the status say FAILED then you cannot install that R version since 
 it doesn't work. However, the current nightly build shows OK so you please 
 try that one.

 Cheers,
 Simon


> On Apr 8, 2019, at 7:38 PM, Elizabeth Purdom  
> wrote:
>
> Hello,
>
> I am wanting to download the development version for R. I have Mac OS X 
> 11.6 and I usually go to 
> https://urldefense.proofpoint.com/v2/url?u=http-3A__r.research.att.com_=DwIFaQ=eRAMFD45gAfqt84VtBcfhQ=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA=oFNo_QwM9UeW-_-oCb3ONvUkqd9XfbLSErM0_0cPZfs=ehDMrFC-4v3rt9_SEm-qgPJvcGrOE-QzaN7v9dUoa78=
>  
> 
>  and download a dmg from there. However, the devel version is listed as  
> 3.5.2 (2018/12/20, r75870), not 3.6. When I downloaded it anyway, I 
> couldn’t use the development version of bioconductor because I didn’t 
> have the right R.
>
> Also, the R.app for that dmg did not work (only the command line worked), 
> with a message that I should check to make sure I have the right OS (see 
> full report below). The website just says el-capitan, which I do have. 
> (the log for the development version also says make FAILED).
>
> I feel like somehow I’m getting a non-updated version of a mirror or 
> something.
>
> Thanks for any help,
> Elizabeth Purdom
>
> -
> Associate Professor
> Department of Statistics, UC Berkeley
>
> (510) 642-6154 (o) | (510) 642-7892 (f) | epur...@stat.berkeley.edu
> Mailing: 367 Evans Hall, Berkeley, CA 94720-3860
> Office: 433 Evans Hall
>
>
> System Software Overview:
>
> System Version:   OS X 10.11.6 (15G22010)
> Kernel Version:   Darwin 15.6.0
>
>
> Error message:
>
> Process:   R [56142]
> Path:  /Applications/R.app/Contents/MacOS/R
> Identifier:org.R-project.R
> Version:   ???
> Code Type: X86-64 (Native)
> Parent Process:??? [1]
> Responsible:   R [56142]
> User ID:   501
>
> Date/Time: 2019-04-08 16:30:33.337 -0700
> OS Version:Mac OS X 10.11.6 (15G22010)
> Report Version:11
> Anonymous UUID:8A5D3691-2F85-AD45-A9AA-66C6B7146343
>
> Sleep/Wake UUID:   182C0109-41E6-4708-A6E8-2A8153BE1F27
>
> Time Awake Since Boot: 45 seconds
> Time Since Wake:   260 seconds
>
> System Integrity Protection: enabled
>
> Crashed Thread:0
>
> Exception Type:EXC_BREAKPOINT (SIGTRAP)
> Exception Codes:   0x0002,

Re: [R-SIG-Mac] Problem with Devel version (R 3.6) for Mac OS X

2019-04-11 Thread Bryan Hanson

Sorry if I was not clear.  I downloaded R-3.6-branch-el-capitan-signed.pkg from 
https://mac.r-project.org/  (redirects from 
r.research.att.com ), which is the binary  + GUI 
with installer.  Once it installed, the start up message said it was r76245, 
but the web site said r76363.

Bryan

> On Apr 11, 2019, at 10:41 AM, peter dalgaard  wrote:
> 
> Nit: 3.6.x is not the devel version at this point (even if unreleased). Dunno 
> why there is no actual R-devel (3.7.x) binaries. 
> 
> However, the tarball does have (in Rversion.h) 
> 
> #define R_SVN_REVISION 76363
> 
> and SVN-REVISION likewise
> 
> are you seeing something different with the .pkg version? 
> 
> -pd
> 
> 
> 
>> On 11 Apr 2019, at 16:09 , Bryan Hanson  wrote:
>> 
>> Thanks Simon for getting that build running again.  I’m not sure if it 
>> matters, but the website says the current version is r76363 but what was 
>> downloaded was r76245.
>> 
>> Bryan
>> 
>>> On Apr 11, 2019, at 8:30 AM, Simon Urbanek  
>>> wrote:
>>> 
>>> Elizabeth,
>>> 
>>> yes, if the status say FAILED then you cannot install that R version since 
>>> it doesn't work. However, the current nightly build shows OK so you please 
>>> try that one.
>>> 
>>> Cheers,
>>> Simon
>>> 
>>> 
 On Apr 8, 2019, at 7:38 PM, Elizabeth Purdom  
 wrote:
 
 Hello,
 
 I am wanting to download the development version for R. I have Mac OS X 
 11.6 and I usually go to http://r.research.att.com/ 
  and download a dmg from there. However, the 
 devel version is listed as  3.5.2 (2018/12/20, r75870), not 3.6. When I 
 downloaded it anyway, I couldn’t use the development version of 
 bioconductor because I didn’t have the right R. 
 
 Also, the R.app for that dmg did not work (only the command line worked), 
 with a message that I should check to make sure I have the right OS (see 
 full report below). The website just says el-capitan, which I do have. 
 (the log for the development version also says make FAILED).
 
 I feel like somehow I’m getting a non-updated version of a mirror or 
 something. 
 
 Thanks for any help,
 Elizabeth Purdom
 
 -
 Associate Professor 
 Department of Statistics, UC Berkeley
 
 (510) 642-6154 (o) | (510) 642-7892 (f) | epur...@stat.berkeley.edu 
 Mailing: 367 Evans Hall, Berkeley, CA 94720-3860
 Office: 433 Evans Hall
 
 
 System Software Overview:
 
 System Version:OS X 10.11.6 (15G22010)
 Kernel Version:Darwin 15.6.0
 
 
 Error message:
 
 Process:   R [56142]
 Path:  /Applications/R.app/Contents/MacOS/R
 Identifier:org.R-project.R
 Version:   ???
 Code Type: X86-64 (Native)
 Parent Process:??? [1]
 Responsible:   R [56142]
 User ID:   501
 
 Date/Time: 2019-04-08 16:30:33.337 -0700
 OS Version:Mac OS X 10.11.6 (15G22010)
 Report Version:11
 Anonymous UUID:8A5D3691-2F85-AD45-A9AA-66C6B7146343
 
 Sleep/Wake UUID:   182C0109-41E6-4708-A6E8-2A8153BE1F27
 
 Time Awake Since Boot: 45 seconds
 Time Since Wake:   260 seconds
 
 System Integrity Protection: enabled
 
 Crashed Thread:0
 
 Exception Type:EXC_BREAKPOINT (SIGTRAP)
 Exception Codes:   0x0002, 0x
 Exception Note:EXC_CORPSE_NOTIFY
 
 Application Specific Information:
 dyld: launch, loading dependent libraries
 
 Dyld Error Message:
 Library not loaded: 
 /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libR.dylib
 Referenced from: /Applications/R.app/Contents/MacOS/R
 Reason: image not found
 
 Binary Images:
 0x7fff6382 - 0x7fff63857a47  dyld (360.22) 
 <6B9CD3BA-2D60-3629-A0CB-AB810F55E8DD> /usr/lib/dyld
 
 Model: MacBookAir7,2, BootROM MBA71.0178.B00, 2 processors, Intel Core i7, 
 2.2 GHz, 8 GB, SMC 2.27f2
 Graphics: Intel HD Graphics 6000, Intel HD Graphics 6000, Built-In
 Memory Module: BANK 0/DIMM0, 4 GB, DDR3, 1600 MHz, 0x80AD, 
 0x483943434E4E4E384A544D4C41522D4E544D
 Memory Module: BANK 1/DIMM0, 4 GB, DDR3, 1600 MHz, 0x80AD, 
 0x483943434E4E4E384A544D4C41522D4E544D
 AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0x117), 
 Broadcom BCM43xx 1.0 (7.21.95.178.1a2)
 Bluetooth: Version 4.4.6f4, 3 services, 19 devices, 1 incoming serial ports
 Network Service: AirPort, AirPort, en0
 Serial ATA Device: APPLE SSD SM0512G, 500.28 GB
 USB Device: USB 3.0 Bus
 USB Device: BRCM20702 Hub
 USB Device: Bluetooth USB Host Controller
 Thunderbolt Bus: MacBook Air, Apple Inc., 27.2

Re: [R-SIG-Mac] Problem with Devel version (R 3.6) for Mac OS X

2019-04-11 Thread peter dalgaard

Nit: 3.6.x is not the devel version at this point (even if unreleased). Dunno 
why there is no actual R-devel (3.7.x) binaries. 

However, the tarball does have (in Rversion.h) 

#define R_SVN_REVISION 76363

and SVN-REVISION likewise

are you seeing something different with the .pkg version? 

-pd
 


> On 11 Apr 2019, at 16:09 , Bryan Hanson  wrote:
> 
> Thanks Simon for getting that build running again.  I’m not sure if it 
> matters, but the website says the current version is r76363 but what was 
> downloaded was r76245.
> 
> Bryan
> 
>> On Apr 11, 2019, at 8:30 AM, Simon Urbanek  
>> wrote:
>> 
>> Elizabeth,
>> 
>> yes, if the status say FAILED then you cannot install that R version since 
>> it doesn't work. However, the current nightly build shows OK so you please 
>> try that one.
>> 
>> Cheers,
>> Simon
>> 
>> 
>>> On Apr 8, 2019, at 7:38 PM, Elizabeth Purdom  
>>> wrote:
>>> 
>>> Hello,
>>> 
>>> I am wanting to download the development version for R. I have Mac OS X 
>>> 11.6 and I usually go to http://r.research.att.com/ 
>>>  and download a dmg from there. However, the 
>>> devel version is listed as  3.5.2 (2018/12/20, r75870), not 3.6. When I 
>>> downloaded it anyway, I couldn’t use the development version of 
>>> bioconductor because I didn’t have the right R. 
>>> 
>>> Also, the R.app for that dmg did not work (only the command line worked), 
>>> with a message that I should check to make sure I have the right OS (see 
>>> full report below). The website just says el-capitan, which I do have. (the 
>>> log for the development version also says make FAILED).
>>> 
>>> I feel like somehow I’m getting a non-updated version of a mirror or 
>>> something. 
>>> 
>>> Thanks for any help,
>>> Elizabeth Purdom
>>> 
>>> -
>>> Associate Professor 
>>> Department of Statistics, UC Berkeley
>>> 
>>> (510) 642-6154 (o) | (510) 642-7892 (f) | epur...@stat.berkeley.edu 
>>> Mailing: 367 Evans Hall, Berkeley, CA 94720-3860
>>> Office: 433 Evans Hall
>>> 
>>> 
>>> System Software Overview:
>>> 
>>> System Version: OS X 10.11.6 (15G22010)
>>> Kernel Version: Darwin 15.6.0
>>> 
>>> 
>>> Error message:
>>> 
>>> Process:   R [56142]
>>> Path:  /Applications/R.app/Contents/MacOS/R
>>> Identifier:org.R-project.R
>>> Version:   ???
>>> Code Type: X86-64 (Native)
>>> Parent Process:??? [1]
>>> Responsible:   R [56142]
>>> User ID:   501
>>> 
>>> Date/Time: 2019-04-08 16:30:33.337 -0700
>>> OS Version:Mac OS X 10.11.6 (15G22010)
>>> Report Version:11
>>> Anonymous UUID:8A5D3691-2F85-AD45-A9AA-66C6B7146343
>>> 
>>> Sleep/Wake UUID:   182C0109-41E6-4708-A6E8-2A8153BE1F27
>>> 
>>> Time Awake Since Boot: 45 seconds
>>> Time Since Wake:   260 seconds
>>> 
>>> System Integrity Protection: enabled
>>> 
>>> Crashed Thread:0
>>> 
>>> Exception Type:EXC_BREAKPOINT (SIGTRAP)
>>> Exception Codes:   0x0002, 0x
>>> Exception Note:EXC_CORPSE_NOTIFY
>>> 
>>> Application Specific Information:
>>> dyld: launch, loading dependent libraries
>>> 
>>> Dyld Error Message:
>>> Library not loaded: 
>>> /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libR.dylib
>>> Referenced from: /Applications/R.app/Contents/MacOS/R
>>> Reason: image not found
>>> 
>>> Binary Images:
>>>  0x7fff6382 - 0x7fff63857a47  dyld (360.22) 
>>> <6B9CD3BA-2D60-3629-A0CB-AB810F55E8DD> /usr/lib/dyld
>>> 
>>> Model: MacBookAir7,2, BootROM MBA71.0178.B00, 2 processors, Intel Core i7, 
>>> 2.2 GHz, 8 GB, SMC 2.27f2
>>> Graphics: Intel HD Graphics 6000, Intel HD Graphics 6000, Built-In
>>> Memory Module: BANK 0/DIMM0, 4 GB, DDR3, 1600 MHz, 0x80AD, 
>>> 0x483943434E4E4E384A544D4C41522D4E544D
>>> Memory Module: BANK 1/DIMM0, 4 GB, DDR3, 1600 MHz, 0x80AD, 
>>> 0x483943434E4E4E384A544D4C41522D4E544D
>>> AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0x117), 
>>> Broadcom BCM43xx 1.0 (7.21.95.178.1a2)
>>> Bluetooth: Version 4.4.6f4, 3 services, 19 devices, 1 incoming serial ports
>>> Network Service: AirPort, AirPort, en0
>>> Serial ATA Device: APPLE SSD SM0512G, 500.28 GB
>>> USB Device: USB 3.0 Bus
>>> USB Device: BRCM20702 Hub
>>> USB Device: Bluetooth USB Host Controller
>>> Thunderbolt Bus: MacBook Air, Apple Inc., 27.2
>>> 
>>> 
>>> 
>>> 
>>> 
>>> 
>>> 
>>> 
>>> 
>>> 
>>> 
>>> 
>>> 
>>> [[alternative HTML version deleted]]
>>> 
>>> ___
>>> R-SIG-Mac mailing list
>>> R-SIG-Mac@r-project.org
>>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
>> 
>> ___
>> R-SIG-Mac mailing list
>> R-SIG-Mac@r-project.org
>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
> 
> ___
> R-SIG-Mac mailing list
> R-SIG-Mac@r-project.org
>

Re: [R-SIG-Mac] Problem with Devel version (R 3.6) for Mac OS X

2019-04-11 Thread Bryan Hanson

Thanks Simon for getting that build running again.  I’m not sure if it matters, 
but the website says the current version is r76363 but what was downloaded was 
r76245.

Bryan

> On Apr 11, 2019, at 8:30 AM, Simon Urbanek  
> wrote:
> 
> Elizabeth,
> 
> yes, if the status say FAILED then you cannot install that R version since it 
> doesn't work. However, the current nightly build shows OK so you please try 
> that one.
> 
> Cheers,
> Simon
> 
> 
>> On Apr 8, 2019, at 7:38 PM, Elizabeth Purdom  
>> wrote:
>> 
>> Hello,
>> 
>> I am wanting to download the development version for R. I have Mac OS X 11.6 
>> and I usually go to http://r.research.att.com/  
>> and download a dmg from there. However, the devel version is listed as  
>> 3.5.2 (2018/12/20, r75870), not 3.6. When I downloaded it anyway, I couldn’t 
>> use the development version of bioconductor because I didn’t have the right 
>> R. 
>> 
>> Also, the R.app for that dmg did not work (only the command line worked), 
>> with a message that I should check to make sure I have the right OS (see 
>> full report below). The website just says el-capitan, which I do have. (the 
>> log for the development version also says make FAILED).
>> 
>> I feel like somehow I’m getting a non-updated version of a mirror or 
>> something. 
>> 
>> Thanks for any help,
>> Elizabeth Purdom
>> 
>> -
>> Associate Professor 
>> Department of Statistics, UC Berkeley
>> 
>> (510) 642-6154 (o) | (510) 642-7892 (f) | epur...@stat.berkeley.edu 
>> Mailing: 367 Evans Hall, Berkeley, CA 94720-3860
>> Office: 433 Evans Hall
>> 
>> 
>> System Software Overview:
>> 
>> System Version:  OS X 10.11.6 (15G22010)
>> Kernel Version:  Darwin 15.6.0
>> 
>> 
>> Error message:
>> 
>> Process:   R [56142]
>> Path:  /Applications/R.app/Contents/MacOS/R
>> Identifier:org.R-project.R
>> Version:   ???
>> Code Type: X86-64 (Native)
>> Parent Process:??? [1]
>> Responsible:   R [56142]
>> User ID:   501
>> 
>> Date/Time: 2019-04-08 16:30:33.337 -0700
>> OS Version:Mac OS X 10.11.6 (15G22010)
>> Report Version:11
>> Anonymous UUID:8A5D3691-2F85-AD45-A9AA-66C6B7146343
>> 
>> Sleep/Wake UUID:   182C0109-41E6-4708-A6E8-2A8153BE1F27
>> 
>> Time Awake Since Boot: 45 seconds
>> Time Since Wake:   260 seconds
>> 
>> System Integrity Protection: enabled
>> 
>> Crashed Thread:0
>> 
>> Exception Type:EXC_BREAKPOINT (SIGTRAP)
>> Exception Codes:   0x0002, 0x
>> Exception Note:EXC_CORPSE_NOTIFY
>> 
>> Application Specific Information:
>> dyld: launch, loading dependent libraries
>> 
>> Dyld Error Message:
>> Library not loaded: 
>> /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libR.dylib
>> Referenced from: /Applications/R.app/Contents/MacOS/R
>> Reason: image not found
>> 
>> Binary Images:
>>   0x7fff6382 - 0x7fff63857a47  dyld (360.22) 
>> <6B9CD3BA-2D60-3629-A0CB-AB810F55E8DD> /usr/lib/dyld
>> 
>> Model: MacBookAir7,2, BootROM MBA71.0178.B00, 2 processors, Intel Core i7, 
>> 2.2 GHz, 8 GB, SMC 2.27f2
>> Graphics: Intel HD Graphics 6000, Intel HD Graphics 6000, Built-In
>> Memory Module: BANK 0/DIMM0, 4 GB, DDR3, 1600 MHz, 0x80AD, 
>> 0x483943434E4E4E384A544D4C41522D4E544D
>> Memory Module: BANK 1/DIMM0, 4 GB, DDR3, 1600 MHz, 0x80AD, 
>> 0x483943434E4E4E384A544D4C41522D4E544D
>> AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0x117), 
>> Broadcom BCM43xx 1.0 (7.21.95.178.1a2)
>> Bluetooth: Version 4.4.6f4, 3 services, 19 devices, 1 incoming serial ports
>> Network Service: AirPort, AirPort, en0
>> Serial ATA Device: APPLE SSD SM0512G, 500.28 GB
>> USB Device: USB 3.0 Bus
>> USB Device: BRCM20702 Hub
>> USB Device: Bluetooth USB Host Controller
>> Thunderbolt Bus: MacBook Air, Apple Inc., 27.2
>> 
>> 
>> 
>> 
>> 
>> 
>> 
>> 
>> 
>> 
>> 
>> 
>> 
>>  [[alternative HTML version deleted]]
>> 
>> ___
>> R-SIG-Mac mailing list
>> R-SIG-Mac@r-project.org
>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
> 
> ___
> R-SIG-Mac mailing list
> R-SIG-Mac@r-project.org
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Re: [R-SIG-Mac] Problem with Devel version (R 3.6) for Mac OS X

2019-04-11 Thread Simon Urbanek

Elizabeth,

yes, if the status say FAILED then you cannot install that R version since it 
doesn't work. However, the current nightly build shows OK so you please try 
that one.

Cheers,
Simon


> On Apr 8, 2019, at 7:38 PM, Elizabeth Purdom  
> wrote:
> 
> Hello,
> 
> I am wanting to download the development version for R. I have Mac OS X 11.6 
> and I usually go to http://r.research.att.com/  
> and download a dmg from there. However, the devel version is listed as  3.5.2 
> (2018/12/20, r75870), not 3.6. When I downloaded it anyway, I couldn’t use 
> the development version of bioconductor because I didn’t have the right R. 
> 
> Also, the R.app for that dmg did not work (only the command line worked), 
> with a message that I should check to make sure I have the right OS (see full 
> report below). The website just says el-capitan, which I do have. (the log 
> for the development version also says make FAILED).
> 
> I feel like somehow I’m getting a non-updated version of a mirror or 
> something. 
> 
> Thanks for any help,
> Elizabeth Purdom
> 
> -
> Associate Professor 
> Department of Statistics, UC Berkeley
> 
> (510) 642-6154 (o) | (510) 642-7892 (f) | epur...@stat.berkeley.edu 
> Mailing: 367 Evans Hall, Berkeley, CA 94720-3860
> Office: 433 Evans Hall
> 
> 
> System Software Overview:
> 
>  System Version:  OS X 10.11.6 (15G22010)
>  Kernel Version:  Darwin 15.6.0
> 
> 
> Error message:
> 
> Process:   R [56142]
> Path:  /Applications/R.app/Contents/MacOS/R
> Identifier:org.R-project.R
> Version:   ???
> Code Type: X86-64 (Native)
> Parent Process:??? [1]
> Responsible:   R [56142]
> User ID:   501
> 
> Date/Time: 2019-04-08 16:30:33.337 -0700
> OS Version:Mac OS X 10.11.6 (15G22010)
> Report Version:11
> Anonymous UUID:8A5D3691-2F85-AD45-A9AA-66C6B7146343
> 
> Sleep/Wake UUID:   182C0109-41E6-4708-A6E8-2A8153BE1F27
> 
> Time Awake Since Boot: 45 seconds
> Time Since Wake:   260 seconds
> 
> System Integrity Protection: enabled
> 
> Crashed Thread:0
> 
> Exception Type:EXC_BREAKPOINT (SIGTRAP)
> Exception Codes:   0x0002, 0x
> Exception Note:EXC_CORPSE_NOTIFY
> 
> Application Specific Information:
> dyld: launch, loading dependent libraries
> 
> Dyld Error Message:
>  Library not loaded: 
> /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libR.dylib
>  Referenced from: /Applications/R.app/Contents/MacOS/R
>  Reason: image not found
> 
> Binary Images:
>0x7fff6382 - 0x7fff63857a47  dyld (360.22) 
> <6B9CD3BA-2D60-3629-A0CB-AB810F55E8DD> /usr/lib/dyld
> 
> Model: MacBookAir7,2, BootROM MBA71.0178.B00, 2 processors, Intel Core i7, 
> 2.2 GHz, 8 GB, SMC 2.27f2
> Graphics: Intel HD Graphics 6000, Intel HD Graphics 6000, Built-In
> Memory Module: BANK 0/DIMM0, 4 GB, DDR3, 1600 MHz, 0x80AD, 
> 0x483943434E4E4E384A544D4C41522D4E544D
> Memory Module: BANK 1/DIMM0, 4 GB, DDR3, 1600 MHz, 0x80AD, 
> 0x483943434E4E4E384A544D4C41522D4E544D
> AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0x117), 
> Broadcom BCM43xx 1.0 (7.21.95.178.1a2)
> Bluetooth: Version 4.4.6f4, 3 services, 19 devices, 1 incoming serial ports
> Network Service: AirPort, AirPort, en0
> Serial ATA Device: APPLE SSD SM0512G, 500.28 GB
> USB Device: USB 3.0 Bus
> USB Device: BRCM20702 Hub
> USB Device: Bluetooth USB Host Controller
> Thunderbolt Bus: MacBook Air, Apple Inc., 27.2
> 
> 
> 
> 
> 
> 
> 
> 
> 
> 
> 
> 
> 
>   [[alternative HTML version deleted]]
> 
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[R-SIG-Mac] Problem with Devel version (R 3.6) for Mac OS X

2019-04-11 Thread Elizabeth Purdom

Hello,

I am wanting to download the development version for R. I have Mac OS X 11.6 
and I usually go to http://r.research.att.com/  and 
download a dmg from there. However, the devel version is listed as  3.5.2 
(2018/12/20, r75870), not 3.6. When I downloaded it anyway, I couldn’t use the 
development version of bioconductor because I didn’t have the right R. 

Also, the R.app for that dmg did not work (only the command line worked), with 
a message that I should check to make sure I have the right OS (see full report 
below). The website just says el-capitan, which I do have. (the log for the 
development version also says make FAILED).

I feel like somehow I’m getting a non-updated version of a mirror or something. 

Thanks for any help,
Elizabeth Purdom

-
Associate Professor 
Department of Statistics, UC Berkeley

(510) 642-6154 (o) | (510) 642-7892 (f) | epur...@stat.berkeley.edu 
Mailing: 367 Evans Hall, Berkeley, CA 94720-3860
Office: 433 Evans Hall
 

System Software Overview:

  System Version:   OS X 10.11.6 (15G22010)
  Kernel Version:   Darwin 15.6.0


Error message:

Process:   R [56142]
Path:  /Applications/R.app/Contents/MacOS/R
Identifier:org.R-project.R
Version:   ???
Code Type: X86-64 (Native)
Parent Process:??? [1]
Responsible:   R [56142]
User ID:   501

Date/Time: 2019-04-08 16:30:33.337 -0700
OS Version:Mac OS X 10.11.6 (15G22010)
Report Version:11
Anonymous UUID:8A5D3691-2F85-AD45-A9AA-66C6B7146343

Sleep/Wake UUID:   182C0109-41E6-4708-A6E8-2A8153BE1F27

Time Awake Since Boot: 45 seconds
Time Since Wake:   260 seconds

System Integrity Protection: enabled

Crashed Thread:0

Exception Type:EXC_BREAKPOINT (SIGTRAP)
Exception Codes:   0x0002, 0x
Exception Note:EXC_CORPSE_NOTIFY

Application Specific Information:
dyld: launch, loading dependent libraries

Dyld Error Message:
  Library not loaded: 
/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libR.dylib
  Referenced from: /Applications/R.app/Contents/MacOS/R
  Reason: image not found

Binary Images:
0x7fff6382 - 0x7fff63857a47  dyld (360.22) 
<6B9CD3BA-2D60-3629-A0CB-AB810F55E8DD> /usr/lib/dyld

Model: MacBookAir7,2, BootROM MBA71.0178.B00, 2 processors, Intel Core i7, 2.2 
GHz, 8 GB, SMC 2.27f2
Graphics: Intel HD Graphics 6000, Intel HD Graphics 6000, Built-In
Memory Module: BANK 0/DIMM0, 4 GB, DDR3, 1600 MHz, 0x80AD, 
0x483943434E4E4E384A544D4C41522D4E544D
Memory Module: BANK 1/DIMM0, 4 GB, DDR3, 1600 MHz, 0x80AD, 
0x483943434E4E4E384A544D4C41522D4E544D
AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0x117), Broadcom 
BCM43xx 1.0 (7.21.95.178.1a2)
Bluetooth: Version 4.4.6f4, 3 services, 19 devices, 1 incoming serial ports
Network Service: AirPort, AirPort, en0
Serial ATA Device: APPLE SSD SM0512G, 500.28 GB
USB Device: USB 3.0 Bus
USB Device: BRCM20702 Hub
USB Device: Bluetooth USB Host Controller
Thunderbolt Bus: MacBook Air, Apple Inc., 27.2













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Re: [R-SIG-Mac] Problem with Devel version (R 3.6) for Mac OS X

Re: [R-SIG-Mac] Problem with Devel version (R 3.6) for Mac OS X

Re: [R-SIG-Mac] Problem with Devel version (R 3.6) for Mac OS X

Re: [R-SIG-Mac] Problem with Devel version (R 3.6) for Mac OS X

Re: [R-SIG-Mac] Problem with Devel version (R 3.6) for Mac OS X

Re: [R-SIG-Mac] Problem with Devel version (R 3.6) for Mac OS X

[R-SIG-Mac] Problem with Devel version (R 3.6) for Mac OS X

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