Re: [sage-release] Sage 9.2.beta13 released

[Dima Pasechnik]

On Sat, Sep 26, 2020 at 9:29 PM Kenji Iohara  wrote:
>
> I have recompiled from the very beginning on Mac OS 10.15.7 with XCode 12,
> and I couldn’t compile
>
> openblas-0.3.9
> readline-6.3.008.p0
> symmetrica-2.0.p11

there is work being done on these issues on
https://trac.sagemath.org/ticket/30494
In particular,

symmetrica is fixed by https://trac.sagemath.org/ticket/29061
readline by https://trac.sagemath.org/ticket/30603
openblas by https://trac.sagemath.org/ticket/30610

HTH
Dima
>
> .
>
> 2020/09/23 23:41、Matthias Köppe のメール:
>
> I just encountered this problem on my system as well. Somehow the 
> installation of `setuptools_scm` had disappeared even though the installation 
> record in local/var/lib/sage/installed was still there. `sage -f 
> setuptools_scm` corrected this.
>
>
> On Wednesday, September 23, 2020 at 12:57:30 PM UTC-7 Matthias Köppe wrote:
>>
>> This is likely from the most recent setuptools upgrade.
>>
>> Try if https://trac.sagemath.org/ticket/29500 fixes this for you.
>>
>> On Wednesday, September 23, 2020 at 2:58:38 AM UTC-7 
>> jonatha...@googlemail.com wrote:
>>>
>>> On ubuntu bionic incremental build  of  and dateutils fail.
>>>
>>> Those are the logs:
>>>
>>>  Found local metadata for zipp-0.5.2
>>>2 Attempting to download package zipp-0.5.2.tar.gz from mirrors
>>>3 https://mirror.koddos.net/sagemath/spkg/upstream/zipp/zipp-0.5.2.tar.gz
>>>4 
>>> [..]
>>>5 zipp-0.5.2
>>>6 
>>>7 Setting up build directory for zipp-0.5.2
>>>8 Finished extraction
>>>9 No patch files found in ../patches
>>>   10 
>>>   11 Host system:
>>>   12 Linux kliem-ThinkPad-L570 4.15.0-115-generic #116-Ubuntu SMP Wed Aug 
>>> 26 14:04:49 UTC 2020 x86_64 x86_64 x86_64 GNU/Linux
>>>   13 
>>>   14 C compiler: gcc
>>>   15 C compiler version:
>>>   16 Using built-in specs.
>>>   17 COLLECT_GCC=gcc
>>>   18 COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/7/lto-wrapper
>>>   19 OFFLOAD_TARGET_NAMES=nvptx-none
>>>   20 OFFLOAD_TARGET_DEFAULT=1
>>>   21 Target: x86_64-linux-gnu
>>>   22 Configured with: ../src/configure -v --with-pkgversion='Ubuntu 
>>> 7.5.0-3ubuntu1~18.04' --with-bugurl=file:///usr/share/doc/gcc-7/README.Bugs 
>>> --enable-languages=c,ada,c++,go,brig +++,d,fortran,objc,obj-c++ 
>>> --prefix=/usr --with-gcc-major-version-only --program-suffix=-7 
>>> --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id 
>>> --libexe +++cdir=/usr/lib --without-included-gettext 
>>> --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap 
>>> --enable-clocale=gnu --enable-libstdcxx-debug --enable-lib 
>>> +++stdcxx-time=yes --with-default-libstdcxx-abi=new 
>>> --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx 
>>> --enable-plugin --enable-default-pie --with-system-zlib  
>>> +++--with-target-system-zlib --enable-objc-gc=auto --enable-multiarch 
>>> --disable-werror --with-arch-32=i686 --with-abi=m64 
>>> --with-multilib-list=m32,m64,mx32 --enable-multilib - 
>>> +++-with-tune=generic --enable-offload-targets=nvptx-none 
>>> --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu 
>>> --host=x86_64-linux-gnu --target=x86_64-linu +++x-gnu
>>>   23 Thread model: posix
>>>   24 gcc version 7.5.0 (Ubuntu 7.5.0-3ubuntu1~18.04)
>>>   25 
>>>   26 Package 'zipp' is currently not installed
>>>   27 No legacy uninstaller found for 'zipp'; nothing to do
>>>   28 Installing zipp-0.5.2
>>>   29 WARNING: Retrying (Retry(total=4, connect=None, read=None, 
>>> redirect=None, status=None)) after connection broken by 
>>> 'ConnectTimeoutError(>> +++nnection object at 0x7fd0fc6899d0>, 'Connection to 192.0.2.0 timed out. 
>>> (connect timeout=15)')': /simple/setuptools-scm/
>>>   30 WARNING: Retrying (Retry(total=3, connect=None, read=None, 
>>> redirect=None, status=None)) after connection broken by 
>>> 'ConnectTimeoutError(>> +++nnection object at 0x7fd0fc6b4150>, 'Connection to 192.0.2.0 timed out. 
>>> (connect timeout=15)')': /simple/setuptools-scm/
>>>   31 WARNING: Retrying (Retry(total=2, connect=None, read=None, 
>>> redirect=None, status=None)) after connection broken by 
>>> 'ConnectTimeoutError(>> +++nnection object at 0x7fd0fc6b42d0>, 'Connection to 192.0.2.0 timed out. 
>>> (connect timeout=15)')': /simple/setuptools-scm/
>>>   32 WARNING: Retrying (Retry(total=1, connect=None, read=None, 
>>> redirect=None, status=None)) after connection broken by 
>>> 'ConnectTimeoutError(>> +++nnection object at 0x7fd0fc6b4490>, 'Connection to 192.0.2.0 timed out. 
>>> (connect timeout=15)')': /simple/setuptools-scm/
>>>   33 WARNING: Retrying (Retry(total=0, connect=None, read=None, 
>>> redirect=None, status=None)) after 

Re: [sage-release] Sage 9.2.beta13 released

[Kenji Iohara]

I have recompiled from the very beginning on Mac OS 10.15.7 with XCode 12,
and I couldn’t compile 

openblas-0.3.9
readline-6.3.008.p0
symmetrica-2.0.p11

.

> 2020/09/23 23:41、Matthias Köppe のメール:
> 
> I just encountered this problem on my system as well. Somehow the 
> installation of `setuptools_scm` had disappeared even though the installation 
> record in local/var/lib/sage/installed was still there. `sage -f 
> setuptools_scm` corrected this.
> 
> 
> On Wednesday, September 23, 2020 at 12:57:30 PM UTC-7 Matthias Köppe wrote:
> This is likely from the most recent setuptools upgrade.
> 
> Try if https://trac.sagemath.org/ticket/29500 
>  fixes this for you.
> 
> On Wednesday, September 23, 2020 at 2:58:38 AM UTC-7 
> jonatha...@googlemail.com 
>  wrote:
> On ubuntu bionic incremental build  of  and dateutils fail.
> 
> Those are the logs:
> 
>  Found local metadata for zipp-0.5.2
>2 Attempting to download package zipp-0.5.2.tar.gz from mirrors
>3 https://mirror.koddos.net/sagemath/spkg/upstream/zipp/zipp-0.5.2.tar.gz 
> 
>4 [..]
>5 zipp-0.5.2
>6 
>7 Setting up build directory for zipp-0.5.2
>8 Finished extraction
>9 No patch files found in ../patches
>   10 
>   11 Host system:
>   12 Linux kliem-ThinkPad-L570 4.15.0-115-generic #116-Ubuntu SMP Wed Aug 26 
> 14:04:49 UTC 2020 x86_64 x86_64 x86_64 GNU/Linux
>   13 
>   14 C compiler: gcc
>   15 C compiler version:
>   16 Using built-in specs.
>   17 COLLECT_GCC=gcc
>   18 COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/7/lto-wrapper
>   19 OFFLOAD_TARGET_NAMES=nvptx-none
>   20 OFFLOAD_TARGET_DEFAULT=1
>   21 Target: x86_64-linux-gnu
>   22 Configured with: ../src/configure -v --with-pkgversion='Ubuntu 
> 7.5.0-3ubuntu1~18.04' --with-bugurl=file:///usr/share/doc/gcc-7/README.Bugs 
> --enable-languages=c,ada,c++,go,brig +++,d,fortran,objc,obj-c++ 
> --prefix=/usr --with-gcc-major-version-only --program-suffix=-7 
> --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id 
> --libexe +++cdir=/usr/lib --without-included-gettext 
> --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap 
> --enable-clocale=gnu --enable-libstdcxx-debug --enable-lib 
> +++stdcxx-time=yes --with-default-libstdcxx-abi=new 
> --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx 
> --enable-plugin --enable-default-pie --with-system-zlib  
> +++--with-target-system-zlib --enable-objc-gc=auto --enable-multiarch 
> --disable-werror --with-arch-32=i686 --with-abi=m64 
> --with-multilib-list=m32,m64,mx32 --enable-multilib - 
> +++-with-tune=generic --enable-offload-targets=nvptx-none 
> --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu 
> --host=x86_64-linux-gnu --target=x86_64-linu +++x-gnu
>   23 Thread model: posix
>   24 gcc version 7.5.0 (Ubuntu 7.5.0-3ubuntu1~18.04)
>   25 
>   26 Package 'zipp' is currently not installed
>   27 No legacy uninstaller found for 'zipp'; nothing to do
>   28 Installing zipp-0.5.2
>   29 WARNING: Retrying (Retry(total=4, connect=None, read=None, 
> redirect=None, status=None)) after connection broken by 
> 'ConnectTimeoutError( object at 0x7fd0fc6899d0>, 'Connection to 192.0.2.0 timed out. (connect 
> timeout=15)')': /simple/setuptools-scm/
>   30 WARNING: Retrying (Retry(total=3, connect=None, read=None, 
> redirect=None, status=None)) after connection broken by 
> 'ConnectTimeoutError( object at 0x7fd0fc6b4150>, 'Connection to 192.0.2.0 timed out. (connect 
> timeout=15)')': /simple/setuptools-scm/
>   31 WARNING: Retrying (Retry(total=2, connect=None, read=None, 
> redirect=None, status=None)) after connection broken by 
> 'ConnectTimeoutError( object at 0x7fd0fc6b42d0>, 'Connection to 192.0.2.0 timed out. (connect 
> timeout=15)')': /simple/setuptools-scm/
>   32 WARNING: Retrying (Retry(total=1, connect=None, read=None, 
> redirect=None, status=None)) after connection broken by 
> 'ConnectTimeoutError( object at 0x7fd0fc6b4490>, 'Connection to 192.0.2.0 timed out. (connect 
> timeout=15)')': /simple/setuptools-scm/
>   33 WARNING: Retrying (Retry(total=0, connect=None, read=None, 
> redirect=None, status=None)) after connection broken by 
> 'ConnectTimeoutError( object at 0x7fd0fc6b4650>, 'Connection to 192.0.2.0 timed out. (connect 
> timeout=15)')': /simple/setuptools-scm/
>   34 ERROR: Could not find a version that satisfies the requirement 
> setuptools_scm>=1.15.0 (from versions: none)
>   35 ERROR: No matching distribution found for setuptools_scm>=1.15.0
>   36 Traceback (most recent call last):
>   37   File 
> 

Re: [sage-release] Sage 9.2.beta13 released

[Thierry Dumont]

Ubuntu 20-04. Migration from beta 12 to beta 13 ok.make ptestlong: all
test passed.
t.d.

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<>

Re: [sage-release] Sage 9.2.beta13 released

[John H Palmieri]

On Monday, September 21, 2020 at 10:32:05 PM UTC-7, John H Palmieri wrote:
>
> For openblas and readline, I suggest using homebrew's versions of those 
> packages. For symmetrica, there is an upgrade at 
> https://trac.sagemath.org/ticket/29061 which seems to fix the problem. 
> For scipy (which you probably haven't reached in your build and which will 
> probably fail when you do), there is a fix at 
> https://trac.sagemath.org/ticket/30604.
>
> If you don't use homebrew, there is a proposed fix for readline at 
> https://trac.sagemath.org/ticket/30603, although it hasn't been tested 
> very much. There are no fixes yet for openblas.
>

Actually, after running configure, you should have seen a message saying

hint: installing the following system packages is recommended and may avoid 
building some of the above SPKGs from source:
$ brew install bdw-gc gcc gsl libatomic_ops openblas openssl r readline 
suite-sparse



You should follow those directions: it will speed up the Sage build 
(especially building gcc, which can take quite a while), as well as 
avoiding some of these Xcode 12 problems.




On Monday, September 21, 2020 at 5:35:43 PM UTC-7, Kenji Iohara wrote:
>
> I have compiled it completely (not an update) on Mac OS 10.15.6 with XCode 
> 12 and execute make -k, it failed for 3 packages:
>
> openblas-0.3.9
> readline-6.3.008.p0
> symmetrica-2.0.p11
>
> . 
>

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Re: [sage-release] Sage 9.2.beta13 released

[John H Palmieri]

For openblas and readline, I suggest using homebrew's versions of those 
packages. For symmetrica, there is an upgrade at 
https://trac.sagemath.org/ticket/29061 which seems to fix the problem. For 
scipy (which you probably haven't reached in your build and which will 
probably fail when you do), there is a fix at 
https://trac.sagemath.org/ticket/30604.

If you don't use homebrew, there is a proposed fix for readline at 
https://trac.sagemath.org/ticket/30603, although it hasn't been tested very 
much. There are no fixes yet for openblas.


On Monday, September 21, 2020 at 5:35:43 PM UTC-7, Kenji Iohara wrote:
>
> I have compiled it completely (not an update) on Mac OS 10.15.6 with XCode 
> 12 and execute make -k, it failed for 3 packages:
>
> openblas-0.3.9
> readline-6.3.008.p0
> symmetrica-2.0.p11
>
> . 
>

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[sage-release] Sage 9.2.beta13 released

[Volker Braun]

As always, you can get the latest beta version from the "develop" git 
branch. Alternatively, the self-contained source tarball is at 
http://www.sagemath.org/download-latest.html 

Again, if there is anything that should be merged in this beta cycle then a 
positively-reviewed patch has to materialize real soon ;-)

468f23815a (tag: 9.2.beta13, trac/develop) Updated SageMath version to 
9.2.beta13
85a3dc5389 Trac #30600: fix ecm on macOS Xcode 12
a7608327d4 Trac #30053: Python 3.7+: setlocale: LC_ALL: cannot change 
locale (C.UTF-8) from build/bin/sage-spkg and in doctests; disable use of 
system Python 3.6
99faab8cbe Trac #30593: gf2x build with Xcode 12
2e265be7d0 Trac #30594: ecl build with Xcode 12
b66986d09b Trac #30491: add check parameter for lattice posets
114ee7373b Trac #30467: src/tox.ini: Check patchbot plugin patterns and 
common typo patterns
f2e15e2be5 Trac #30465: faster and memory efficient implementation of 
Szeged index
868adde689 Trac #30444: Mention anonymous hyperlinks in developer doc
ee5f4f3c6d Trac #30437: Special Implementation of random_element() for 
Laurent Series Rings
2eebb6c71e Trac #30425: Upgrade: misc pip upgrades 2020-08: SymPy, pip, six
fc5bfc7617 Trac #29363: At the end of configure, indicate which 
optional/experimental packages are configured to be installed
87116edf2a Trac #28864: 17 internet doctest failing in findstat.py
c58024ef03 Trac #30568: Fix computation of eigenvectors using arb
5e159a4298 Trac #30560: Make openssl an optional dependency of python3
6525ae113e Trac #30557: Add spkg-configure.m4 for openssl
fda96c41ac Trac #28838: Resurrect "sage -sws2rst" via a pip-installable 
package sage_sws2rst
da78a68d07 Trac #30396: cygwin-standard: sagelib build fails
d5b9e06998 Trac #30403: Standard package zlib cannot be installed on some 
platforms, breaking Docker build
907912f7ff Trac #30405: Graphs: fast implementation to compute antipodal 
graph
5adec5bd66 Trac #30329: Graphs: last unbounded diameter distance-regular 
graphs
51ea8fa1cb Trac #30320: set_default_frame() too restrictive on 
parallelizable manifolds
e8c87f3cd3 Trac #30312: Graphs: more classical parameters distance regular 
graphs
42f81f6f5c Trac #30275: Replace AssertionError with ValueError
57cd152782 Trac #30216: GH Actions: Test Windows with WSL
762de29268 Trac #30187: Words: improve `count` consistency across datatype 
representation
02c41b Trac #30041: coefficients of a polynomial yielding an element in 
an extension of a p-adic field
dff7c61f3a Trac #29541: spkg-configure.m4 for giac
70ea8fedf0 Trac #28136: Add number_of_subgroups() method to AbelianGroup
395be93987 Trac #28012: py3: import certain things from collections.abc
d9c15ae9c9 Trac #30550: conda-forge-ubuntu-standard: Pillow fails to install
d73ae6d0f4 Trac #30543: Document spkg-configure.m4 and distros directory
488f5076f7 Trac #30535: conda-forge-macos-standard: sagelib build fails 
with linbox-related error
53cf5c2aed Trac #29743: is_unit() fails for power-series-ring element: 
O(t^0)
72a76b31a5 Trac #28991: spkg-configure.m4 for gc
0e79ab3e4c Trac #28814: Conversion of scientific notation floats/RDF,etc... 
incorrect in Mathematica interface
0192e3a95c Trac #11736: Linear time implementation of lex_BFS()
f100b1886d Trac #30536: configure: No longer prefer gfortran-9; homebrew: 
Recommend gcc instead of gcc@9
736554330f Trac #30519: Fix check of orientation in volume form
cd65699176 Trac #30340: tox.yml (dist): Do not fail when the tag already 
exists
07a863dd16 Trac #28022: Downgrade rubiks to optional
363f8586eb Trac #16809: leak in maxima interface
5ec24db181 (tag: 9.2.beta12) Updated SageMath version to 9.2.beta12

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