Hello, sorry to answer so late,but I was busy today.
That's true. By the way, I could write down some of it for the wiki
(especially the part about setting up cowbuilder, which I found to be a
little tricky). Is DebianScience/Tools/InstallingCowbuilder an
acceptable page name?
I do not
mostly two things:
* there's a bug in squeeze's cdebootstrap, that gets triggered by
cowbuilder --create, so I had to upgrade cdebootstrap to sid
is it a well known bug or did you fill a bug report ?
* it was not immediately obvious to me how to make home-built packages
for the
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On Wed, 18 Jul 2012 17:42:07 +0200
Radostan Riedel raybu...@googlemail.com wrote:
On Wed, 18. Jul 15:15, Picca Frédéric-Emmanuel wrote:
In that case we should work with the cbf maintainer and see if the
python binding could be package on its own, do
1) check that both cbf python binding
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On Thu, 19 Jul 2012 15:05:15 +0200
Radostan Riedel raybu...@googlemail.com wrote:
On Thu, 19. Jul 13:50, Picca Frédéric-Emmanuel wrote:
In that case no need to bother with this we will remove the pycbf when
repacking
:D Just wrote a patch for that. Anyway I just found a bug
On Thu, 19 Jul 2012 15:20:04 +0200
Radostan Riedel raybu...@googlemail.com wrote:
On Thu, 19. Jul 15:16, Picca Frédéric-Emmanuel wrote:
Then it will be possible to polish the patch series and propose them
for adoption to the upstream. :))
I'm a little bit afraid that they might not like my
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OK, Nevermind that boost problem was my own stupidity. I was compiling against
my systems boost lib and the version was actually too low. But it's building
with 1.49 in sid so no problem here. So I'll push my results later.
pbuilder is your friend :)
python2.6 and python2.7 both build.
how
I just solved the boost_python problem. It now builds with system libs and
checks
if boost_python-py* is available, if not it uses boost_python. This should
also work
with other distro's than Debian. This works completely with Debian's scons
package. Just tested it and pushed it into git.
I have no idea whether this is somehow related to the really wide scope
of Debian Science. Since some time I have the gut feeling that we
should split some more focussed Blends from the large Debian Science
umbrella which would create some more focussed teams and it might
enhance the
Hello
De : Radostan Riedel [raybu...@googlemail.com]
Date d'envoi : jeudi 12 juillet 2012 16:39
À : debian-science@lists.debian.org
Objet : Re: RE : RE : RE : RE : RE : cctbx debian package
On Thu, 12. Jul 09:51, Baptiste Carvello wrote:
I'd rather
Hello
I don't think we need this, because we are not installing the shlibs into
/usr/lib during the build I'm using a prefix. This warning always happen
when
you run libtool --mode=install, it's more like a reminder then a warning.
We could run that command at the end but I don't think this
Hello,
do we have a link to the list of allowed keyword in the task pages ?
See you
Fred
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Archive:
they are using an older clipper version ?
OK, I think I know what the problem is. I was using the wrong includes but
when
I use the systems include I'm missing some header files.
clipper/cctbx/clipper_cctbx.h
I quickly searched the web and found this[1]. Looks like it's a header from
On Sat, 14. Jul 13:31, Frédéric-Emmanuel Picca wrote:
did he answer to your mail about mmdb, clipper and gpp4 ?
No he didn't.
Let's wait at least one more week, maybe he is in holidays.
I don't think there is an upstream package where this directory is in. So I
don't think we can fix the
OK I think I know what the problem is. This cctbx examples in clipper depend
on
cctbx. So we have a clipper depend on cctbx and cctbx depend on clipper
situation. If I add this directory in clipper the build will fail. I see if I
can workaround
this issue in cctbx so we don't need to
But I think I solved it! I just needed to include the directory in cctbx with
that
examples. It's now building with system libs for clipper and boost. I think
this
is the best solution. Now I'll see if I can work on the annlib problems.
ok, once you have commited all your work on the git
Hello,
Install target is not ready to use. We need to figure out how the package
structure will look like first
In fact the recommended way to package python modules is to use dh_python2 [1]
One small difficulty though: the extensions need to be built for all the
supported python
found by argument-dependent lookup at the point of instantiation [-fpermissive]
In file included from
/tmp/buildd/cctbx-2012.05.08.2305/cctbx_sources/mmtbx/bulk_solvent/bulk_solvent_ext.cpp:7:0:
/tmp/buildd/cctbx-2012.05.08.2305/cctbx_sources/mmtbx/bulk_solvent/bulk_solvent.h:935:1:
note:
Yeah I know shame on me :)! I was just working on other problems first...
Seriously I don't think the rules file is in a shape where it can be used
yet. A
lot of cctbx packages were added and others got thrown out since last year.
Also
there is a bug in fftw3tbx were also header files are
just for the record, I got this error now that I added the right build-dep
/tmp/buildd/cctbx-2012.05.08.2305/cctbx_sources/mmtbx/bulk_solvent/bulk_solvent_ext.cpp:108:33:
required from here
/tmp/buildd/cctbx-2012.05.08.2305/cctbx_sources/mmtbx/bulk_solvent/bulk_solvent.h:395:9:
error:
can you add these informations into the wiki page. so I will avoid to ask
again and again.
I know myself ;). then it would be possible to point upstream to the wiki
page.
I'll update the wiki page.
thanks
all this to avoid building a build system on our own.
Yeah I know it's
just for information, the .la are useless, look at here [1]
So the important point is to build the the .so files and there links the same
way it is done with autotools.
We need also to take into account that these libraries should be installed with
the multi-arch-triplet on day [2]
exemple
Cheers
Frederic
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Hello,
thanks to both of you for your answers. I subscribed to the ITP bug. I
will write to Carlo Segre tomorrow.
great
I also cloned the git repo. From a quick look at the commit messages, it
looks like some of the original patches don't apply on latest cctbx. If
it is so, I will first
Hello both of you, I created the gpp4 and clipper git repositories from the
Ubuntu packages
I would refresh them using dh, fixing the watch files to check if we have the
latest version of the libraries etc...
enjoy.
Hello Baptiste,
Great! Yeah some of the patches don't apply completely or
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Hello Andreas
Hello,
I would like to inform you about one result of the Debian packaging
hands-on tutorial which was integrated into the Debian Science
sprint[1] kindly hosted by ESFR[2] (thanks to the organisers). In the
tutorial session I was busy with Rainer Wilcke and a colleague of
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Description:
pymca - Python applications and toolkit for X-ray fluorescence analysis
pymca-data - Architecture independent data files for PyMca
Changes:
pymca (4.6.0-1) unstable; urgency=low
.
* Imported Upstream version
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Description:
pymca - Python applications and toolkit for X-ray fluorescence analysis
pymca-data - Architecture independent data files for PyMca
Changes:
pymca (4.6.0-2) unstable; urgency=low
.
* debian/patches
- 0002
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-commit.3.tmp'
I will try this evening from my house to check thaht this is not a port problem.
See you
Frédéric
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Package: libzmq3-dev
Severity: important
Dear Maintainer,
Hello, when I tryed to install libzmq3-dev I got this error
Unpacking libzmq3-dev:i386 (from .../libzmq3-dev_3.1.0~beta+dfsg-1_i386.deb)
dpkg: error processing /var/cache/apt/archives/libzmq3-dev_3.1.0~beta+dfsg-
1_i386.deb
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Description:
python-spyderlib - python IDE for scientists
spyder - python IDE for scientists
Changes:
spyder (2.1.10-1) unstable; urgency=low
.
* Imported Upstream version 2.1.10
Checksums-Sha1
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Description:
python-taurus - framework for Tango Control System CLI and GUI applications.
python-taurus-doc - framework for Tango Control System CLI and GUI
applications.
Closes: 614247
Changes:
taurus (3.0.0-1
Hello
I am in vacation until the end of the mounth
already started to package 4.6.0 version_
De : Jerome Kieffer [jerome.kief...@esrf.fr]
Date d'envoi : jeudi 17 mai 2012 12:20
À : debian-science@lists.debian.org
Objet : issue on backporting pymca
Hello,
I
Hello,
Hi list
Is anyone interested in uploading qwtplot3d for me. It closes two RC bugs and
I need it uploaded to fix ftbs in one of my other packages pyqwt3d.
Yes I am, but your package does not build on my i386 laptop.
You did the mistake to add a symbol file for a c++ library [1].
Hello Gudjon
If I where you, I would separate th eRC bug fix and your attempt to add the
symbol file.
I already tryed to add a symbol file for one of my c++ library and it took me a
few iteration to fix this symbol file for all debian supporter arch, then I
gave up.
so to me, you should
1)
Package: python-qt4
Version: 4.9.1-3
Severity: important
Dear Maintainer,
Hello, since the last upgrade of my computer (sid)
guiqwt-test program segfault, I try do find the culprite
and as usual I found this
from PyQt4 import Qwt5
Program received signal SIGSEGV, Segmentation fault.
ok, I did a rebuild of pyqwt5 and now I can do an
Python 2.7.3rc2 (default, Apr 22 2012, 22:35:38)
[GCC 4.6.3] on linux2
Type help, copyright, credits or license for more information.
from PyQt4 import Qwt5
so a binNMU of pyqwt5 should be enought
See you
Frederic
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so a binNMU of pyqwt5 should be enought
...
Scheduled. Please let me know in the bug if that solves it for you.
Great now it works
thanks
Frederic
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Package: python-qt4
Version: 4.9.1-3
Severity: important
Dear Maintainer,
Hello, since the last upgrade of my computer (sid)
guiqwt-test program segfault, I try do find the culprite
and as usual I found this
from PyQt4 import Qwt5
Program received signal SIGSEGV, Segmentation fault.
ok, I did a rebuild of pyqwt5 and now I can do an
Python 2.7.3rc2 (default, Apr 22 2012, 22:35:38)
[GCC 4.6.3] on linux2
Type help, copyright, credits or license for more information.
from PyQt4 import Qwt5
so a binNMU of pyqwt5 should be enought
See you
Frederic
so a binNMU of pyqwt5 should be enought
...
Scheduled. Please let me know in the bug if that solves it for you.
Great now it works
thanks
Frederic
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Description:
python-pytango - API for the TANGO control system (documentation)
python-pytango-doc - API for the TANGO control system
Closes: 670955
Changes:
pytango (7.2.3-2) unstable; urgency=low
.
* debian
-maintain...@lists.alioth.debian.org
Changed-By: Picca Frédéric-Emmanuel pi...@debian.org
Description:
python-pytango - API for the TANGO control system (documentation)
python-pytango-doc - API for the TANGO control system
Changes:
pytango (7.2.3-1) unstable; urgency=low
.
* Imported Upstream
.
what is the difference with python-netCDF4 ?
Regards
Fred
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Package: pylint
Version: 0.25.1-1
Severity: normal
Dear Maintainer,
I tryed to used pylint-gui and got this error message while clicking on run
picca@xx:~/Projets/pymca/PyMca$ pylint-gui
No config file found, using default configuration
Exception in thread Thread-1:
Traceback (most recent
...@lists.alioth.debian.org
Changed-By: Picca Frédéric-Emmanuel pi...@debian.org
Description:
python-spyderlib - python IDE for scientists
spyder - python IDE for scientists
Closes: 663235 665761
Changes:
spyder (2.1.9-1) unstable; urgency=low
.
* Imported Upstream version 2.1.9 (Closes: #663235
Package: pyflakes
Version: 0.5.0-1
Severity: normal
Dear Maintainer,
I am using pyflakes on my project, and I got some wrong positiv warning due to
the del command.
so I attached a test.py file, which shows the problem
pyflakes test.py
test.py:5: undefined name 'a'
thanks
Frederic
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Package: pyflakes
Version: 0.5.0-1
Severity: normal
Dear Maintainer,
Still working with pyflake on my project and now I found this:
picca@x:/tmp$ pyflakes test.py
test.py:5: redefinition of function 'toto' from line 2
the test file is attached., indeed the condition is not that simple in
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Description:
pymca - Python applications and toolkit for X-ray fluorescence analysis
pymca-data - Architecture independent data files for PyMca
Changes:
pymca (4.5.0-3) unstable; urgency=low
.
* fix permission to avoid
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Changed-By: Picca Frédéric-Emmanuel pi...@debian.org
Description:
pymca - Python applications and toolkit for X-ray fluorescence analysis
pymca-data - Architecture independent data files for PyMca
Changes:
pymca (4.5.0-4) unstable; urgency=low
.
* debian/rules
- fix
...@lists.alioth.debian.org
Changed-By: Picca Frédéric-Emmanuel pi...@debian.org
Description:
pymca - Python applications and toolkit for X-ray fluorescence analysis
pymca-data - Architecture independent data files for PyMca
Closes: 656198
Changes:
pymca (4.5.0-1) unstable; urgency=low
.
* Imported
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Changed-By: Picca Frédéric-Emmanuel pi...@debian.org
Description:
pymca - Python applications and toolkit for X-ray fluorescence analysis
pymca-data - Architecture independent data files for PyMca
Changes:
pymca (4.5.0-2) unstable; urgency=low
.
* oups FTBFS everywhere
Hello Yaroslav,
can you explain the exact step to reproduce your bug.
I can not reproduce it for now.
thanks
Fred
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Description:
python-numexpr - Fast numerical array expression evaluator for Python and NumPy
python-numexpr-dbg - Fast numerical array expression evaluator for Python and
NumPy (d
Changes:
numexpr (1.4.2-3.1
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Changed-By: Picca Frédéric-Emmanuel pi...@debian.org
Description:
python-numexpr - Fast numerical array expression evaluator for Python and NumPy
python-numexpr-dbg - Fast numerical array expression evaluator for Python and
NumPy (d
Changes:
numexpr (1.4.2-3.2
A fix for this has already been pushed to git.
http://anonscm.debian.org/gitweb/?p=debian-science/packages/pytables.git;a=commitdiff;h=a49645249a397fce5256d45b457f03a166d21fc5
A fix for this has already been pushed to git.
http://anonscm.debian.org/gitweb/?p=debian-science/packages/pytables.git;a=commitdiff;h=a49645249a397fce5256d45b457f03a166d21fc5
Package: zeromq
Severity: wishlist
Dear Maintainer,
It would be nice to provide zeromq 3.1 in experimental to prepare migration of
a few other packages
thanks
Frederic
-- System Information:
Debian Release: wheezy/sid
APT prefers unstable
APT policy: (500, 'unstable'), (500, 'testing'),
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Changed-By: Picca Frédéric-Emmanuel pi...@debian.org
Description:
python-guidata - dataset manipulation GUI generator
Changes:
guidata (1.4.1-2) unstable; urgency=low
.
* debian/rules
- updated to build on squeeze
* bump Standards-Version to 3.9.3
- updated debian
...@lists.alioth.debian.org
Changed-By: Picca Frédéric-Emmanuel pi...@debian.org
Description:
python-guiqwt - efficient 2D data-plotting library
Changes:
guiqwt (2.1.6-3) unstable; urgency=low
.
* debian/rules
- updated to build on stable
* debian/copyright
- fix copyright Format with cme (config
Frédéric-Emmanuel pi...@debian.org
Description:
liblog4tango4 - logging for TANGO - shared library
liblog4tango4-dbg - logging for TANGO - debug library
liblog4tango4-dev - logging for TANGO - development library
liblog4tango4-doc - logging for TANGO - documentation
libtango-tools - TANGO
...@lists.alioth.debian.org
Changed-By: Picca Frédéric-Emmanuel pi...@debian.org
Description:
python-guiqwt - efficient 2D data-plotting library
Changes:
guiqwt (2.1.6-4) unstable; urgency=low
.
* bump Standards-Version 3.9.3 (nothing to do)
* fix FTBFS on kfreebsd
Checksums-Sha1
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Changed-By: Picca Frédéric-Emmanuel pi...@debian.org
Description:
python-pytango - API for the TANGO control system
Changes:
pytango (7.2.2-3) unstable; urgency=low
.
* bump the Standards-Version to 3.9.3
- use the copyright format 1.0
* dpkg/rules
- updated to build
Package: piuparts
Version: 0.43
Severity: important
Dear Maintainer,
I tryed to used piuparts on my box while preparing one of my package and I got
this error message.
root@mordor:/home/picca/Debian/main/guidata# piuparts
guidata_1.4.1-2_i386.changes
Guessed: debian
0m0.0s INFO:
Package: python-tables
Version: 2.3.1-2
Followup-For: Bug #661286
Hello Antonio,
do we have a ticket open at the upstream for thoses bus error (alignment) ?
-- System Information:
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APT prefers unstable
APT policy: (500, 'unstable'), (500, 'testing'), (500,
thanks for the reminder ;)
I am building it now with an equivalent of your patch.
Frederic
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Hello, thanks for the manual.
I already tryed with -t and got the same error
root@mordor:/home/picca/Debian/main/guiqwt# piuparts -t /tmp
guiqwt_2.1.6-3_i386.changes
Guessed: debian
0m0.0s INFO:
--
0m0.0s INFO: To
ok, so here is my fstab
# /etc/fstab: static file system information.
#
# Use 'vol_id --uuid' to print the universally unique identifier for a
# device; this may be used with UUID= as a more robust way to name devices
# that works even if disks are added and removed. See fstab(5).
#
# file system
Package: python-tables
Version: 2.3.1-2
Followup-For: Bug #661286
Hello Antonio,
do we have a ticket open at the upstream for thoses bus error (alignment) ?
-- System Information:
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APT prefers unstable
APT policy: (500, 'unstable'), (500, 'testing'), (500,
E015
uid Picca Frédéric-Emmanuel pi...@synchrotron-soleil.fr
GPG public key 1024D/A59B1171 2009-08-11
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uid Picca Frédéric-Emmanuel pi...@debian.org
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Package: libconfig-model-perl
Version: 2.005-1
Severity: normal
Dear Maintainer,
I used cme fix dpkg-control with one of my packages (tango)
-Description: TANGO distributed control system - shared library
+Description: tANGO distributed control system - shared library
the proposed change is to
upload.
Thanks,
Beatrice
Thanks a lot
Frederic
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...@lists.alioth.debian.org
Changed-By: Picca Frédéric-Emmanuel pi...@debian.org
Description:
python-spyderlib - Python IDE for scientists
spyder - Python IDE for scientists
Changes:
spyder (2.1.8-1) unstable; urgency=low
.
* Imported Upstream version 2.1.8
* prepare for backport
Checksums-Sha1
-By: Picca Frédéric-Emmanuel pi...@debian.org
Description:
libassa3.5-5 - object-oriented C++ networking library
libassa3.5-5-dbg - debugging symbols for libassa3.5-5
libassa3.5-5-dev - object-oriented C++ networking library
Closes: 649138
Changes:
libassa (3.5.0-1.2) unstable; urgency=low
Hello,
please repack the source and remove the waf binary as it is useless for the
build.
thanks for your efforts.
Frederic
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Hello, Yaroslav, do you think that the patch is the right fix,
or is it better to modify the Build-dep.
See you
Frederic
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Hello Antonio
I will push it later today.
ok, lets push your changes.
See you
Fred
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Hello,
please repack the source and remove the waf binary as it is useless for the
build.
thanks for your efforts.
Frederic
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Hello, Yaroslav, do you think that the patch is the right fix,
or is it better to modify the Build-dep.
See you
Frederic
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Package: libmpich2-dev
Version: 1.4.1-4
Severity: important
File: mpich2
Dear Maintainer,
Hello, it seems that on sparc your last modification cause an FTBFS.
dh_installcatalogs -plibmpich2-3
grep -s -v '^misc:Depends=' debian/libmpich2-3.substvars
debian/libmpich2-3.substvars.new ||
now that numexpr provide a -dbg package it is possible to build a -dbg package
for pytables.
See you
Frederic
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beware that python-guiqwt containt already a sift binary.
/usr/bin/sift
see you
Frederic
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beware that python-guiqwt containt already a sift binary.
/usr/bin/sift
see you
Frederic
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Archive:
Le Wed, 15 Feb 2012 22:44:16 +0100,
Antonio Valentino antonio.valent...@tiscali.it a écrit :
Hi Frederic,
Il 12/02/2012 22:19, PICCA Frédéric-Emmanuel ha scritto:
Hello, Antonio
sorry for the delay I was on holidays :)
so I tried to build the new numexpr package, but it failed
the package during this time.
Thanks for the reminder :), and sorry to bother you with this.
Frederic
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As I sent a call for trnaslations and gave translators an arbitrary
delay up to Feb 25th, is there a chance that you can defer the upload
until that date (I can send you a reminding notice at that time)?
ok, for a reminder :)
See you
Fred
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I have also re-enabled unit tests.
They should work now, but, please, test the fix on your platform.
:(((
==
FAIL: test_reductions (__main__.test_numexpr1)
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the package during this time.
Thanks for the reminder :), and sorry to bother you with this.
Frederic
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