Bug#879886: [Debian-med-packaging] Bug#879886: libhts2: libhts2 needs to handle ABI changes

(to be re-added) symbols file. Have a nice day, Charles -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan

Bug#879886: [Debian-med-packaging] Bug#879886: libhts2: libhts2 needs to handle ABI changes

(to be re-added) symbols file. Have a nice day, Charles -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan

Re: [Debian-med-packaging] Bug#879886: libhts2: libhts2 needs to handle ABI changes

(to be re-added) symbols file. Have a nice day, Charles -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan

[med-svn] [libtfbs-perl] branch master updated (a77924a -> b070d21)

This is an automated email from the git hooks/post-receive script. plessy pushed a change to branch master in repository libtfbs-perl. from a77924a libtfbs-perl (0.7.1-1) unstable; urgency=medium new b070d21 Update metadata; add SciCrunch ID. The 1 revisions listed above as

[med-svn] [libtfbs-perl] 01/01: Update metadata; add SciCrunch ID.

This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch master in repository libtfbs-perl. commit b070d2137c24b20e577107ae6b5bda6ef78e9800 Author: Charles Plessy <ple...@debian.org> Date: Sun Oct 22 17:20:06 2017 +0900 Update metadat

Re: Should we package BioConductor TFBSTools? [Was [libtfbs-perl] 04/08: Add upstream's notice of deprecation to the package's description.]

Le Sat, Oct 21, 2017 at 08:08:49AM +0200, Andreas Tille a écrit : > > when reading this commit log: Should we package Bioconductor TFBSTools? > > This would need at least a hand full of Bioconductor depencencies but > usually it is quite straightforward and can be easily done via > >

Accepted libtfbs-perl 0.7.1-1 (source amd64) into unstable

kag...@lists.alioth.debian.org> Changed-By: Charles Plessy <ple...@debian.org> Description: libtfbs-perl - scanning DNA sequence with a position weight matrix Changes: libtfbs-perl (0.7.1-1) unstable; urgency=medium . * New upstream version 0.7.1 * d/copyright, d/watch: Stop repacking upstream sou

[med-svn] [libtfbs-perl] 06/08: Remove cruft Makefiles at build time.

This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch master in repository libtfbs-perl. commit fc8a912f60e332013e9b255fadc63f70d665107f Author: Charles Plessy <ple...@debian.org> Date: Sat Oct 21 11:23:35 2017 +0900 Remove cruft Mak

[med-svn] [libtfbs-perl] 08/08: libtfbs-perl (0.7.1-1) unstable; urgency=medium

This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch master in repository libtfbs-perl. commit a77924aa9cf5f61e126ef21027259c6e4887abc3 Author: Charles Plessy <ple...@debian.org> Date: Sat Oct 21 11:46:18 2017 +0900 libtfbs-perl (0

[med-svn] [libtfbs-perl] 07/08: Conforms to Policy version 4.1.1.

This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch master in repository libtfbs-perl. commit 392d4ece03aeeff616d0a2dc70009429a6a92643 Author: Charles Plessy <ple...@debian.org> Date: Sat Oct 21 11:41:20 2017 +0900 Conforms to Policy v

[med-svn] [libtfbs-perl] 01/01: pristine-tar data for libtfbs-perl_0.7.1.orig.tar.gz

This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch pristine-tar in repository libtfbs-perl. commit 0f40a06f0fbbe901aac0e182d743b2740064a76a Author: Charles Plessy <ple...@debian.org> Date: Sat Oct 21 10:56:39 2017 +0900 pristine-ta

[med-svn] [libtfbs-perl] annotated tag upstream/0.7.1 created (now 282782b)

E6B8nhVSZCe1Uhk9QsJkU0Y5ZqyvBuJ6G0MkmJO+xthck4qtSX0= =p1nS -END PGP SIGNATURE- Charles Plessy (1): New upstream version 0.7.1 --- This annotated tag includes the following new commits: new 16bdbb0 New upstream

[med-svn] [libtfbs-perl] annotated tag debian/0.7.1-1 created (now 1f4c52b)

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[med-svn] [libtfbs-perl] 05/08: Refresh spelling error patch.

This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch master in repository libtfbs-perl. commit fb6026da72aa281791ab49d67e1eae99b0895ff0 Author: Charles Plessy <ple...@debian.org> Date: Sat Oct 21 11:19:05 2017 +0900 Refresh spelling

[med-svn] [libtfbs-perl] branch pristine-tar updated (d3b49c3 -> 0f40a06)

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[med-svn] [libtfbs-perl] branch upstream updated (d61aae7 -> 16bdbb0)

This is an automated email from the git hooks/post-receive script. plessy pushed a change to branch upstream in repository libtfbs-perl. from d61aae7 Imported Upstream version 0.7.0+dfsg new 16bdbb0 New upstream version 0.7.1 The 1 revisions listed above as "new" are entirely

[med-svn] [libtfbs-perl] 01/08: Stop repacking upstream sources, that are cleaner.

This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch master in repository libtfbs-perl. commit 7ac36df8aa20c07d434925c9cde96bf58a49f657 Author: Charles Plessy <ple...@debian.org> Date: Sat Oct 21 10:55:33 2017 +0900 Stop repacking up

[med-svn] [libtfbs-perl] branch master updated (423a8a0 -> a77924a)

This is an automated email from the git hooks/post-receive script. plessy pushed a change to branch master in repository libtfbs-perl. from 423a8a0 Upload to unstable new 7ac36df Stop repacking upstream sources, that are cleaner. new 16bdbb0 New upstream version

[med-svn] [libtfbs-perl] 03/08: Merge tag 'upstream/0.7.1'

This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch master in repository libtfbs-perl. commit 4eac69bc5f4dc247936c8de847d5a2388ec68b9e Merge: 7ac36df 16bdbb0 Author: Charles Plessy <ple...@debian.org> Date: Sat Oct 21 10:56:43 2017

[med-svn] [libtfbs-perl] 04/08: Add upstream's notice of deprecation to the package's description.

This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch master in repository libtfbs-perl. commit 26ca40e7df03f63e24c8cd86a504250c834becf0 Author: Charles Plessy <ple...@debian.org> Date: Sat Oct 21 11:00:58 2017 +0900 Add upstream's

Accepted last-align 885-1 (source) into unstable

org> Changed-By: Charles Plessy <ple...@debian.org> Description: last-align - genome-scale comparison of biological sequences Changes: last-align (885-1) unstable; urgency=medium . * New upstream version 885 * debian/rules: re-enable multi-threading. * debian/control: build-depe

[med-svn] [last-align] branch upstream updated (00a898d -> 899a681)

This is an automated email from the git hooks/post-receive script. plessy pushed a change to branch upstream in repository last-align. from 00a898d New upstream version 869 new 899a681 New upstream version 885 The 1 revisions listed above as "new" are entirely new to this

[med-svn] [last-align] 06/06: last-align (885-1) unstable; urgency=medium

This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch master in repository last-align. commit f1f8b1923754105586d8d118faaa2ec7c6d03b6a Author: Charles Plessy <ple...@debian.org> Date: Sun Oct 15 22:21:04 2017 +0900 last-align (885-1) un

[med-svn] [last-align] 05/06: Depend on zlib1g-dev.

This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch master in repository last-align. commit 5e39664a12fbca85c96299e0801b2b06ce139d1b Author: Charles Plessy <ple...@debian.org> Date: Sun Oct 15 22:14:22 2017 +0900 Depend on zlib

[med-svn] [last-align] 01/01: pristine-tar data for last-align_885.orig.tar.xz

This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch pristine-tar in repository last-align. commit ea4e1cd736faa6c0108e41efcb52bc47b3978ab7 Author: Charles Plessy <ple...@debian.org> Date: Sun Oct 15 22:05:38 2017 +0900 pristine-ta

[med-svn] [last-align] 02/06: Merge tag 'upstream/885'

This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch master in repository last-align. commit c2d94c99456d4f9e97d0c90cae937b584964cd29 Merge: 72682ad 899a681 Author: Charles Plessy <ple...@debian.org> Date: Sun Oct 15 22:05:41 2017 +0900

[med-svn] [last-align] annotated tag debian/885-1 created (now ba632a0)

This is an automated email from the git hooks/post-receive script. plessy pushed a change to annotated tag debian/885-1 in repository last-align. at ba632a0 (tag) tagging f1f8b1923754105586d8d118faaa2ec7c6d03b6a (commit) replaces debian/869-1 tagged by Charles Plessy

[med-svn] [last-align] 03/06: Re-enable multi-threading.

This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch master in repository last-align. commit 51e07bd07c8571f4c384a809f51ecf0add26d776 Author: Charles Plessy <ple...@debian.org> Date: Sun Oct 15 22:06:13 2017 +0900 Re-enable multi-thr

[med-svn] [last-align] annotated tag upstream/885 created (now 1b7d5c4)

This is an automated email from the git hooks/post-receive script. plessy pushed a change to annotated tag upstream/885 in repository last-align. at 1b7d5c4 (tag) tagging 899a68165f8864d3cfb67aca39ac97a2add9c8ac (commit) replaces upstream/869 tagged by Charles Plessy

[med-svn] [last-align] branch pristine-tar updated (9dd3884 -> ea4e1cd)

This is an automated email from the git hooks/post-receive script. plessy pushed a change to branch pristine-tar in repository last-align. from 9dd3884 pristine-tar data for last-align_869.orig.tar.xz new ea4e1cd pristine-tar data for last-align_885.orig.tar.xz The 1

[med-svn] [last-align] 01/06: New upstream version 885

This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch master in repository last-align. commit 899a68165f8864d3cfb67aca39ac97a2add9c8ac Author: Charles Plessy <ple...@debian.org> Date: Sun Oct 15 22:05:37 2017 +0900 New upstream versi

[med-svn] [last-align] 04/06: Update comments (s/Subversion/Git/, s/http/https/).

This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch master in repository last-align. commit dc9236686c7dd208fd9e1d504c02efa05cdec496 Author: Charles Plessy <ple...@debian.org> Date: Sun Oct 15 22:06:44 2017 +0900 Update comme

[med-svn] [last-align] branch master updated (72682ad -> f1f8b19)

This is an automated email from the git hooks/post-receive script. plessy pushed a change to branch master in repository last-align. from 72682ad fix autopkgtest new 899a681 New upstream version 885 new c2d94c9 Merge tag 'upstream/885' new 51e07bd Re-enable

Re: Re : c'est trolldi et rien à se mettre sous la dent

7-AVI-136/ https://www.intel.fr/content/www/fr/fr/architecture-and-technology/intel-amt-vulnerability-announcement.html https://mjg59.dreamwidth.org/48429.html Bon trollodi, -- Charles Plessy Tsurumi, Kanagawa, Japon

Bug#868558: Would you please not upload new r-* packages until transition is finalised (Re: r-api-3.4)

without uploads is needed if we want to see the r-* packages in Testing. Note that according to the package tracker, r-base will be part of another transition soon. So it may be best to do the 5-day break before it starts. Have a nice day, Charles -- Charles Plessy Debian Med packaging team

Bug#868558: Would you please not upload new r-* packages until transition is finalised (Re: r-api-3.4)

without uploads is needed if we want to see the r-* packages in Testing. Note that according to the package tracker, r-base will be part of another transition soon. So it may be best to do the 5-day break before it starts. Have a nice day, Charles -- Charles Plessy Debian Med packaging team

Re: Would you please not upload new r-* packages until transition is finalised (Re: r-api-3.4)

without uploads is needed if we want to see the r-* packages in Testing. Note that according to the package tracker, r-base will be part of another transition soon. So it may be best to do the 5-day break before it starts. Have a nice day, Charles -- Charles Plessy Debian Med packaging team

Accepted r-cran-pheatmap 1.0.8-2 (source) into unstable

kag...@lists.alioth.debian.org> Changed-By: Charles Plessy <ple...@debian.org> Description: r-cran-pheatmap - GNU R package to create pretty heatmaps Changes: r-cran-pheatmap (1.0.8-2) unstable; urgency=medium . * Team upload. * Rebuild for the r-base-3.4 transition. * Moved packaging fro

[med-svn] [r-cran-pheatmap] branch master updated (8af0a04 -> 690f960)

This is an automated email from the git hooks/post-receive script. plessy pushed a change to branch master in repository r-cran-pheatmap. from 8af0a04 Import Debian changes 1.0.8-1 new 0a90adf Moved packaging from SVN to Git new 12f25f3 Use canonical CRAN URL.

[med-svn] [r-cran-pheatmap] 01/03: Moved packaging from SVN to Git

This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch master in repository r-cran-pheatmap. commit 0a90adfa574bb546598f4e1ba635935bcc66943a Author: Charles Plessy <ple...@debian.org> Date: Mon Oct 2 13:14:47 2017 +0900 Moved packaging fr

[med-svn] [r-cran-pheatmap] 02/03: Use canonical CRAN URL.

This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch master in repository r-cran-pheatmap. commit 12f25f36a8c85a398d88bd712524acb9495eb7d6 Author: Charles Plessy <ple...@debian.org> Date: Mon Oct 2 13:26:52 2017 +0900 Use canonical CR

[med-svn] [r-cran-pheatmap] annotated tag debian/1.0.8-2 created (now ade6bc9)

This is an automated email from the git hooks/post-receive script. plessy pushed a change to annotated tag debian/1.0.8-2 in repository r-cran-pheatmap. at ade6bc9 (tag) tagging 690f960d9e27f61e2646974899959798fd6c73d2 (commit) replaces debian/1.0.8-1 tagged by Charles Plessy

[med-svn] [r-cran-pheatmap] 03/03: r-cran-pheatmap (1.0.8-2) unstable; urgency=medium

This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch master in repository r-cran-pheatmap. commit 690f960d9e27f61e2646974899959798fd6c73d2 Author: Charles Plessy <ple...@debian.org> Date: Mon Oct 2 13:30:11 2017 +0900 r-cran-pheatmap (1

[med-svn] [r-cran-pheatmap] branch upstream created (now 7503a52)

This is an automated email from the git hooks/post-receive script. plessy pushed a change to branch upstream in repository r-cran-pheatmap. at 7503a52 Import Upstream version 1.0.8 No new revisions were added by this update. -- Alioth's /usr/local/bin/git-commit-notice on

[med-svn] [r-cran-pheatmap] annotated tag debian/1.0.8-1 created (now c589012)

This is an automated email from the git hooks/post-receive script. plessy pushed a change to annotated tag debian/1.0.8-1 in repository r-cran-pheatmap. at c589012 (tag) tagging 8af0a04e4f14d11a569c46e459b346078eca41e1 (commit) replaces debian/1.0.8-1_bpo8+1 tagged by Charles

[med-svn] [r-cran-pheatmap] annotated tag debian/1.0.8-1_bpo8+1 created (now f755ea0)

This is an automated email from the git hooks/post-receive script. plessy pushed a change to annotated tag debian/1.0.8-1_bpo8+1 in repository r-cran-pheatmap. at f755ea0 (tag) tagging f2c5844cae580875cee1849f9f80e8f568d4b23a (commit) replaces upstream/1.0.8 tagged by Charles

[med-svn] [r-cran-pheatmap] branch master created (now 8af0a04)

This is an automated email from the git hooks/post-receive script. plessy pushed a change to branch master in repository r-cran-pheatmap. at 8af0a04 Import Debian changes 1.0.8-1 This branch includes the following new commits: new 7503a52 Import Upstream version 1.0.8

[med-svn] [r-cran-pheatmap] branch pristine-tar created (now 19f6202)

This is an automated email from the git hooks/post-receive script. plessy pushed a change to branch pristine-tar in repository r-cran-pheatmap. at 19f6202 pristine-tar data for r-cran-pheatmap_1.0.8.orig.tar.gz This branch includes the following new commits: new 19f6202

[med-svn] [r-cran-pheatmap] 01/03: Import Upstream version 1.0.8

This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch master in repository r-cran-pheatmap. commit 7503a52edd1569b416c03e650314b85cb8cae960 Author: Charles Plessy <ple...@debian.org> Date: Mon Oct 2 13:03:46 2017 +0900 Import Upstream v

[med-svn] [r-cran-pheatmap] annotated tag upstream/1.0.8 created (now 0bc82a6)

This is an automated email from the git hooks/post-receive script. plessy pushed a change to annotated tag upstream/1.0.8 in repository r-cran-pheatmap. at 0bc82a6 (tag) tagging 7503a52edd1569b416c03e650314b85cb8cae960 (commit) tagged by Charles Plessy on Mon Oct 2 13

[med-svn] [r-cran-pheatmap] 02/03: Import Debian changes 1.0.8-1~bpo8+1

This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch master in repository r-cran-pheatmap. commit f2c5844cae580875cee1849f9f80e8f568d4b23a Author: Andreas Tille Date: Mon Jun 20 12:10:49 2016 +0200 Import Debian changes

[med-svn] [r-cran-pheatmap] 03/03: Import Debian changes 1.0.8-1

This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch master in repository r-cran-pheatmap. commit 8af0a04e4f14d11a569c46e459b346078eca41e1 Author: Andreas Tille Date: Mon Jun 20 12:06:05 2016 +0200 Import Debian changes

[med-svn] [r-cran-pheatmap] 01/01: pristine-tar data for r-cran-pheatmap_1.0.8.orig.tar.gz

This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch pristine-tar in repository r-cran-pheatmap. commit 19f620227187ae90dc48cc39a71ee1bad6960b71 Author: Charles Plessy <ple...@debian.org> Date: Mon Oct 2 13:03:46 2017 +0900 pristine-ta

[med-svn] r24225 - trunk/community/website/docs

Author: plessy Date: 2017-10-02 04:10:12 + (Mon, 02 Oct 2017) New Revision: 24225 Modified: trunk/community/website/docs/policy.xml Log: Correct direction of redirections; use unambiguous svn command. Modified: trunk/community/website/docs/policy.xml

[med-svn] r24224 - trunk/packages/R/r-cran-pheatmap/trunk

Author: plessy Date: 2017-10-02 04:08:39 + (Mon, 02 Oct 2017) New Revision: 24224 Added: trunk/packages/R/r-cran-pheatmap/trunk/README.status Log: Document packaging to Git Added: trunk/packages/R/r-cran-pheatmap/trunk/README.status

[med-svn] r24223 - trunk/packages/R/r-cran-pheatmap/trunk

Author: plessy Date: 2017-10-02 04:04:57 + (Mon, 02 Oct 2017) New Revision: 24223 Removed: trunk/packages/R/r-cran-pheatmap/trunk/debian/ Log: Moved packaging to Git ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org

[med-svn] r24222 - trunk/community/website/docs

Author: plessy Date: 2017-10-02 03:58:12 + (Mon, 02 Oct 2017) New Revision: 24222 Modified: trunk/community/website/docs/policy.xml Log: Relative link to convert_svn_2_git, so that cut-pasting the command works. Modified: trunk/community/website/docs/policy.xml

Bug#877288: r-base: Rebuilding r-bioc-biocgenerics with new R changes behaviour

Le Sat, Sep 30, 2017 at 04:52:32PM +0900, Charles Plessy a écrit : > The order of builds may matter (because of subtelties of the S4 system). > Have you tried rebuilding r-bioc-iranges in a system after the rebuilt > r-bioc-biocgenerics package was installed ? Sorry, I did not see that t

Bug#877288: r-base: Rebuilding r-bioc-biocgenerics with new R changes behaviour

lt;https://support.bioconductor.org>. Cheers, Charles -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan

[med-svn] [bedtools] 01/01: bedtools (2.26.0+dfsg-5) UNRELEASED; unstable; urgency=medium

This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch master in repository bedtools. commit 4272686e5697984ef2812a954e03f9fd41d665e2 Author: Charles Plessy <ple...@debian.org> Date: Tue Sep 26 22:45:07 2017 +0900 bedtools (2.26.0+

[med-svn] [bedtools] branch master updated (dfc6298 -> 4272686)

This is an automated email from the git hooks/post-receive script. plessy pushed a change to branch master in repository bedtools. from dfc6298 bedtools (2.26.0+dfsg-4) unstable; urgency=medium new 4272686 bedtools (2.26.0+dfsg-5) UNRELEASED;unstable; urgency=medium The 1

[med-svn] [bedtools] annotated tag debian/2.26.0+dfsg-5 created (now fed6e04)

not built. Closes: #876802 -- Charles Plessy <ple...@debian.org> Tue, 26 Sep 2017 22:17:0122:42:08 +0900 -BEGIN PGP SIGNATURE- iQIzBAABCgAdFiEEc0cUmcxg7Z7ugFlGxb1sjyKV1QIFAlnKWf4ACgkQxb1sjyKV 1QL9OxAAnMfoNUpDJesjyjX+LA/I8qOIau/+FUmqHWVP3Ncl4hFJiElD

Accepted bedtools 2.26.0+dfsg-5 (source) into unstable

kag...@lists.alioth.debian.org> Changed-By: Charles Plessy <ple...@debian.org> Description: bedtools - suite of utilities for comparing genomic features bedtools-test - test data for the bedtools package Closes: 876802 Changes: bedtools (2.26.0+dfsg-5) unstable; urgency=medium

Concerns about OMICTOOLS terms of service..

otherwise noted, is licensed under a Creative Commons Attribution License." Sorry to come a bit late to the party with criticisms. What is your opinion on the matter ? Have a nice day, Charles -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan

Accepted bedtools 2.26.0+dfsg-4 (source) into unstable

kag...@lists.alioth.debian.org> Changed-By: Charles Plessy <ple...@debian.org> Description: bedtools - suite of utilities for comparing genomic features bedtools-test - test data for the bedtools package Changes: bedtools (2.26.0+dfsg-4) unstable; urgency=medium . [ Andreas Tille ] * Fix

[med-svn] [bedtools] 03/03: bedtools (2.26.0+dfsg-4) unstable; urgency=medium

This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch master in repository bedtools. commit dfc6298f113a9f50129ec6a09edd7003864bf62b Author: Charles Plessy <ple...@debian.org> Date: Mon Sep 25 23:36:00 2017 +0900 bedtools (2.26.0+

[med-svn] [bedtools] 02/03: Add back a "cruft" file deleted by mistake.

This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch master in repository bedtools. commit af3104fa7803ae5ca281dc5bce26348c6d863658 Author: Charles Plessy <ple...@debian.org> Date: Mon Sep 25 23:07:00 2017 +0900 Add back a "

[med-svn] [bedtools] annotated tag debian/2.26.0+dfsg-4 created (now 6957f70)

but hesitating to close it) * debhelper 10 * d/watch: version=4 [Steffen Moeller] * debian/upstream/metadata: Added references to registries * debian/copyright: Added Upstream-Name [ Charles Plessy ] * Distribute /usr/bin/groupBy again. * Conflict/Replace/Provide filo (which is being

[med-svn] [bedtools] 01/03: Distribute again /usr/bin/groupBy and replace the filo package that is being removed.

This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch master in repository bedtools. commit 0838c921f69318223ba94e4d5ff94958ede29026 Author: Charles Plessy <ple...@debian.org> Date: Mon Sep 25 12:29:30 2017 +0900 Distribute again /u

[med-svn] [bedtools] branch master updated (a9787c2 -> dfc6298)

This is an automated email from the git hooks/post-receive script. plessy pushed a change to branch master in repository bedtools. from a9787c2 Added references to registries, upstream-name new 0838c92 Distribute again /usr/bin/groupBy and replace the filo package that is

Re: [Un peu HS] mot de passe sous firefox

 ? Oui, et c'est un peu énervant avec les formulaires d'administration de listes de diffusion Mailman (puisqu'il ne retient qu'une paire id/mdp par domaine). Bon courage, -- Charles Plessy Tsurumi, Kanagawa, Japon

Accepted pvclust 2.0-0-2 (source) into unstable

kag...@lists.alioth.debian.org> Changed-By: Charles Plessy <ple...@debian.org> Description: r-cran-pvclust - Hierarchical Clustering with P-Values via Multiscale Bootstrap Changes: pvclust (2.0-0-2) unstable; urgency=medium . * Team upload * Rebuild for r-api-3.4. * cme fix dpkg-control (VCS fi

[med-svn] [pvclust] 03/03: pvclust (2.0-0-2) unstable; urgency=medium

This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch master in repository pvclust. commit 349eb0a359e8f99b3b485e0ce8b35c300ed95696 Author: Charles Plessy <ple...@debian.org> Date: Sun Sep 24 22:31:22 2017 +0900 pvclust (2.0-0-2) un

[med-svn] [pvclust] 01/03: cme fix dpkg-control.

This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch master in repository pvclust. commit f0f668de64d416fe967ec50db3790a69e819149f Author: Charles Plessy <ple...@debian.org> Date: Sun Sep 24 22:18:27 2017 +0900 cme fix dpkg-c

[med-svn] [pvclust] branch master updated (2982190 -> 349eb0a)

This is an automated email from the git hooks/post-receive script. plessy pushed a change to branch master in repository pvclust. from 2982190 Upload to unstable new f0f668d cme fix dpkg-control. new 7bbe1de Update gbp configuration file for recent versions.

[med-svn] [pvclust] 02/03: Update gbp configuration file for recent versions.

This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch master in repository pvclust. commit 7bbe1dea3a1ea5714d366bce172303f98a35029e Author: Charles Plessy <ple...@debian.org> Date: Sun Sep 24 22:22:23 2017 +0900 Update gbp configuratio

[med-svn] [pvclust] annotated tag debian/2.0-0-2 created (now 2f37788)

This is an automated email from the git hooks/post-receive script. plessy pushed a change to annotated tag debian/2.0-0-2 in repository pvclust. at 2f37788 (tag) tagging 349eb0a359e8f99b3b485e0ce8b35c300ed95696 (commit) replaces debian/1.2-2-2 tagged by Charles Plessy

Re: r-api-3.4 (Was: Upcoming new round of R package rebuilds [FWD: [Rd] R-devel) object header changes that require reinstalling packages]

age: r-cran-ca Package: r-cran-coda Package: r-cran-conting [and a few dozens more] Have a nice day -- Charles Plessy Tsurumi, Kanagawa, Japan

Re: Riddled by debian-policy 8.1.1 about ldconfig

libraries complying with the Policy, you will see that this file indeed "activate-noawait" the "ldconfig" trigger. For packages built using Debhelper, the triggers files is added by `dh_makeshlibs`, which explains why you can not see traces of it in the clean source package. I

Re: Deferred: 403 4.7.0 TLS handshake failed.

Le Wed, Sep 13, 2017 at 05:35:15PM +0200, BERTRAND Joël a écrit : > > Nonobstant ceci, il est fort probable que ce paquet termine dans > stable avec tous les problèmes qui s'ensuivront. Mais avec les notes de publication qui y répondront. Bonne journée, Charles -- Charl

Re: [summary] Re: wanted: educate us please on key dongles

Le Sat, Sep 09, 2017 at 08:09:00PM +, Sotirios Vrachas a écrit : > > - https://wiki.debian.org/GnuPG/StubKe > This page does not exist. > Sorry, it was <https://wiki.debian.org/GnuPG/StubKeys>. Have a nice Sunday, -- Charles Plessy Tsurumi, Kanagawa, Japan

[summary] Re: wanted: educate us please on key dongles

them, etc. Have a nice day, Charles -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan

Re: Serveur bloqué par de multiples CRON -f ?

> Le 16/03/17 à 11:27, Charles Plessy <ple...@debian.org> a écrit : > CP> > CP> (Résumé des épisodes précédents, j'ai une machine virtuelle sur laquelle > il > CP> devient parfois impossible de se connecter. Les sessions existantes > continuent > CP>

Bug#872867: is ISO-3166 really the optimal list for our users?

phical location. Have a nice day, -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan

Bug#872867: is ISO-3166 really the optimal list for our users?

phical location. Have a nice day, -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan

Bug#872867: is ISO-3166 really the optimal list for our users?

that if users do not find their country, it is because Debian could not find support for it. So it seems that the solution would be to move away from asking the user to enter country codes ? Otherwise, the propose disclaimer sounds like a good alternative. Also, the elephant in the room is that a

Bug#872867: is ISO-3166 really the optimal list for our users?

that if users do not find their country, it is because Debian could not find support for it. So it seems that the solution would be to move away from asking the user to enter country codes ? Otherwise, the propose disclaimer sounds like a good alternative. Also, the elephant in the room is that a

Bug#860568: iptraf-ng: cron spam due to duplicated logrotate rules

> /etc/cron.daily/logrotate: > error: iptraf-ng:2 duplicate log entry for /var/log/iptraf/rvnamed.log Hi all, isn't it because the transitional package iptraf contains /etc/logrotate.d/iptraf, and shouldn't this file be removed from the package ? Have a nice Sunday, -- Charles Plessy Tsurumi, Kanagawa, Japan

Re: [Bioc-devel] Git transition is happening August 16th.

installed on your system. perl: warning: Falling back to a fallback locale ("en_US.UTF-8"). Obviously, client-side LC_ALL=C suppresses this, but perhaps it can be silenced server-side, either by supporting many locales, or enforcing the default C locale without warning. Have

Re: debian/upstream/metadata: registry item for the Blends' task pages?

distro XML format to provide metadata for software components and to assign unique identifiers to software. Have a nice week-end, Charles -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan

Re: installing GUI launchers and mimes

update-menus fi I am not sure why this is still needed while there is already a dpkg trigger doing the work. Anyway, as noted elsewhere, the Debian menu system is being phased out. Have a nice day, -- Charles Plessy Tsurumi, Kanagawa, Japan

Re: Les cyber menaces basculent vers Linux et les serveurs Web

plus compliquée (en partie à dessein) pour un débutant. Sous Linux il y a quand même l'infâme « curl http://example.com/fais-moi-confiance.sh | sudo bash - »... Amicalement, -- Charles Plessy Tsurumi, Kanagawa, Japon

Re: Backports of R packages.

Le Thu, Jul 06, 2017 at 11:53:13AM -0700, Nadiya Sitdykova a écrit : > > Would you mind to share with me those documents from debci presentation? Hello Nadiya, sorry that I forgot ! You can download the document at the following URL. My notes are from page 6 onwards.

Bug#867237: rakudo lost readline support.

the following messages when entering the REPL. You may want to `zef install Readline` or `zef install Linenoise` or use rlwrap for a line editor The `zef` program does not seem to be distributed in Debian. I there an easy way to re-enable readline support in perl6 ? Have a nice day, -- Charles

Bug#776557: debian-policy: Please clarify 2.5 'unix heritage >= important'

se which one would expect to find on > > | any Unix-like system. If the expectation is that an experienced Unix > > | person who found it missing would say "What on earth is going on, where > > | is foo?", it must be an important package. Le Thu, Jan 29, 2015 at 10:0

Bug#776557: debian-policy: Please clarify 2.5 'unix heritage >= important'

se which one would expect to find on > > | any Unix-like system. If the expectation is that an experienced Unix > > | person who found it missing would say "What on earth is going on, where > > | is foo?", it must be an important package. Le Thu, Jan 29, 2015 at 10:0

Bug#758234: debian-policy: allow packages to depend on packages of lower priority

the network, plus the bare minimum of commonly-expected and necessary tools to administrate the system. This does not include space-consuming features such as documentationa and multilingual support. (The last sentence above is there because man-db, debian-faq and locales are all priority:standard). Have a nice day, -- Charles Plessy Tsurumi, Kanagawa, Japan

Bug#758234: debian-policy: allow packages to depend on packages of lower priority

the network, plus the bare minimum of commonly-expected and necessary tools to administrate the system. This does not include space-consuming features such as documentationa and multilingual support. (The last sentence above is there because man-db, debian-faq and locales are all priority:standard). Have a nice day, -- Charles Plessy Tsurumi, Kanagawa, Japan

Re: Bug#758234: debian-policy: allow packages to depend on packages of lower priority

the network, plus the bare minimum of commonly-expected and necessary tools to administrate the system. This does not include space-consuming features such as documentationa and multilingual support. (The last sentence above is there because man-db, debian-faq and locales are all priority:standard). Have a nice day, -- Charles Plessy Tsurumi, Kanagawa, Japan

Re: Bug#758234: debian-policy: allow packages to depend on packages of lower priority

the network, plus the bare minimum of commonly-expected and necessary tools to administrate the system. This does not include space-consuming features such as documentationa and multilingual support. (The last sentence above is there because man-db, debian-faq and locales are all priority:standard). Have a nice day, -- Charles Plessy Tsurumi, Kanagawa, Japan

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