Re: [petsc-users] SLEPc solve: progress info and abort option

[Varun Hiremath]

Thanks, Matt and Jose! I have added a custom function to KSPMonitorSet, and
that improves the response time for the *abort *option, however, it is
still a bit slow for very big problems, but I think that is probably
because I am using the MUMPS direct solver so likely a large amount of time
is spent inside MUMPS. And I am guessing there is no way to get the
progress info of MUMPS from PETSc?

Jose, for the progress bar I am using the number of converged eigenvalues
(nconv) as obtained using EPSMonitorSet function. But this is slow as it is
called only once every iteration, and typically many eigenvalues converge
within an iteration, so is there any way to get more detailed/finer info on
the solver progress?

Many thanks for your help.

Thanks,
Varun

On Fri, Mar 4, 2022 at 11:36 AM Jose E. Roman  wrote:

> Yes, assuming that the eigensolver is calling KSPSolve(), you can set a
> monitor with KSPMonitorSet(). This will be called more often than the
> callback for EPSSetStoppingTestFunction().
>
> Jose
>
> > El 4 mar 2022, a las 20:16, Matthew Knepley 
> escribió:
> >
> >
> > On Fri, Mar 4, 2022 at 2:07 PM Varun Hiremath 
> wrote:
> > Hi All,
> >
> > We use SLEPc to compute eigenvalues of big problems which typically
> takes a long time. We want to add a progress bar to inform the user of the
> estimated time remaining to finish the computation. In addition, we also
> want to add an option for the user to abort the computation midway if
> needed.
> >
> > To some extent, I am able to do these by attaching a custom function to
> EPSSetStoppingTestFunction and using nconv/nev as an indication of
> progress, and throwing an exception when the user decides to abort the
> computation. However, since this function gets called only once every
> iteration, for very big problems it takes a long time for the program to
> respond. I was wondering if there is any other function to which I can
> attach, which gets called more frequently and can provide more fine-grained
> information on the progress.
> >
> > I believe (Jose can correct me) that the bulk of the time in an iterate
> would be in the linear solve. You can insert something into a KSPMonitor.
> If you know the convergence tolerance and assume a linear convergence rate
> I guess you could estimate the "amount done".
> >
> >   Thanks,
> >
> >  Matt
> >
> > Thanks,
> > Varun
> >
> >
> > --
> > What most experimenters take for granted before they begin their
> experiments is infinitely more interesting than any results to which their
> experiments lead.
> > -- Norbert Wiener
> >
> > https://www.cse.buffalo.edu/~knepley/
>
>

[petsc-users] SLEPc solve: progress info and abort option

[Varun Hiremath]

Hi All,

We use SLEPc to compute eigenvalues of big problems which typically takes a
long time. We want to add a progress bar to inform the user of the
estimated time remaining to finish the computation. In addition, we also
want to add an option for the user to abort the computation midway if
needed.

To some extent, I am able to do these by attaching a custom function to
EPSSetStoppingTestFunction

and
using nconv/nev as an indication of progress, and throwing an exception
when the user decides to abort the computation. However, since this
function gets called only once every iteration, for very big problems it
takes a long time for the program to respond. I was wondering if there is
any other function to which I can attach, which gets called more frequently
and can provide more fine-grained information on the progress.

Thanks,
Varun

Re: [petsc-users] PETSc MUMPS interface

[Varun Hiremath]

Hi Hong,

I tested this in the latest petsc main branch and it appears to be working
fine. Thanks for implementing this so quickly!

Regards,
Varun

On Wed, Jan 19, 2022 at 3:33 PM Zhang, Hong  wrote:

> Varun,
> This feature is merged to petsc main
> https://gitlab.com/petsc/petsc/-/merge_requests/4727
> Hong
> --
> *From:* petsc-users  on behalf of Zhang,
> Hong via petsc-users 
> *Sent:* Wednesday, January 19, 2022 9:37 AM
> *To:* Varun Hiremath 
> *Cc:* Peder Jørgensgaard Olesen via petsc-users 
> *Subject:* Re: [petsc-users] PETSc MUMPS interface
>
> Varun,
> Good to know it works. FactorSymbolic function is still being called
> twice, but the 2nd call is a no-op, thus it still appears in '-log_view'. I
> made changes in the low level of mumps routine, not within PCSetUp()
> because I feel your use case is limited to mumps, not other matrix package
> solvers.
> Hong
> --
> *From:* Varun Hiremath 
> *Sent:* Wednesday, January 19, 2022 2:44 AM
> *To:* Zhang, Hong 
> *Cc:* Peder Jørgensgaard Olesen via petsc-users 
> *Subject:* Re: [petsc-users] PETSc MUMPS interface
>
> Hi Hong,
>
> Thanks, I tested your branch and I think it is working fine. I don't see
> any increase in runtime, however with -log_view I see that the
> MatLUFactorSymbolic function is still being called twice, so is this
> expected? Is the second call a no-op?
>
> $ ./ex52.o -use_mumps_lu -print_mumps_memory -log_view | grep
> MatLUFactorSym
> MatLUFactorSym 2 1.0 4.4411e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00
> 0.0e+00  2  0  0  0  0   2  0  0  0  0 0
>
> Thanks,
> Varun
>
> On Mon, Jan 17, 2022 at 7:49 PM Zhang, Hong  wrote:
>
> Varun,
> I created a branch hzhang/feature-mumps-mem-estimate,
> see https://gitlab.com/petsc/petsc/-/merge_requests/4727
>
> You may give it a try and let me know if this is what you want.
> src/ksp/ksp/tutorials/ex52.c is an example.
>
> Hong
> --
> *From:* Varun Hiremath 
> *Sent:* Monday, January 17, 2022 12:41 PM
> *To:* Zhang, Hong 
> *Cc:* Jose E. Roman ; Peder Jørgensgaard Olesen via
> petsc-users 
> *Subject:* Re: [petsc-users] PETSc MUMPS interface
>
> Hi Hong,
>
> Thanks for looking into this. Here is the workflow that I might use:
>
> MatLUFactorSymbolic(F,A,perm,iperm,);
>
> // get memory estimates from MUMPS e.g. INFO(3), INFOG(16), INFOG(17)
> // find available memory on the system e.g. RAM size
> if (estimated_memory > available_memory)
> {
>// inform and stop; or
>// switch MUMPS to out-of-core factorization
>ICNTL(22) = 1;
> }
> else
> {
>// set appropriate settings for in-core factorization
> }
>
> // Now we call the solve and inside if MatLUFactorSymbolic is already
> called then it should be skipped
> EPSSolve(eps);
>
> Thanks,
> Varun
>
> On Mon, Jan 17, 2022 at 9:18 AM Zhang, Hong  wrote:
>
> Varun,
> I am trying to find a way to enable you to switch options after 
> MatLUFactorSymbolic().
> A hack is modifying the flag  'mumps->matstruc'
> inside  MatLUFactorSymbolic_AIJMUMPS() and MatFactorNumeric_MUMPS().
>
> My understanding of what you want is:
>   // collect mumps memory info
>   ...
>   MatLUFactorSymbolic(F,A,perm,iperm,);
>   printMumpsMemoryInfo(F);
>   //-
> if (memory is available) {
> EPSSolve(eps); --> skip calling of MatLUFactorSymbolic()
> } else {
>//out-of-core (OOC) option in MUMPS
> }
>
> Am I correct? I'll let you know once I work out a solution.
> Hong
>
> --
> *From:* Varun Hiremath 
> *Sent:* Sunday, January 16, 2022 10:10 PM
> *To:* Zhang, Hong 
> *Cc:* Jose E. Roman ; Peder Jørgensgaard Olesen via
> petsc-users 
> *Subject:* Re: [petsc-users] PETSc MUMPS interface
>
> Hi Jose, Hong,
>
> Thanks for the explanation. I have verified using -log_view that 
> MatLUFactorSymbolic
> is indeed getting called twice.
>
> Hong, we use MUMPS solver for other things, and we typically run the
> symbolic analysis first and get memory estimates to ensure that we have
> enough memory available to run the case. If the available memory is not
> enough, we can stop or switch to the out-of-core (OOC) option in MUMPS. We
> wanted to do the same when using MUMPS via SLEPc/PETSc. Please let me know
> if there are other ways of getting these memory stats and switching options
> during runtime with PETSc.
> Appreciate your help!
>
> Thanks,
> Varun
>
> On Sun, Jan 16, 2022 at 4:01 PM Zhang, Hong  wrote:
>
> Varun,
> I believe Jose is correct. You may verify it by running your code with
> option '-log_view', then chec

Re: [petsc-users] PETSc MUMPS interface

[Varun Hiremath]

Hi Hong,

Thanks, I tested your branch and I think it is working fine. I don't see
any increase in runtime, however with -log_view I see that the
MatLUFactorSymbolic function is still being called twice, so is this
expected? Is the second call a no-op?

$ ./ex52.o -use_mumps_lu -print_mumps_memory -log_view | grep MatLUFactorSym
MatLUFactorSym 2 1.0 4.4411e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00
0.0e+00  2  0  0  0  0   2  0  0  0  0 0

Thanks,
Varun

On Mon, Jan 17, 2022 at 7:49 PM Zhang, Hong  wrote:

> Varun,
> I created a branch hzhang/feature-mumps-mem-estimate,
> see https://gitlab.com/petsc/petsc/-/merge_requests/4727
>
> You may give it a try and let me know if this is what you want.
> src/ksp/ksp/tutorials/ex52.c is an example.
>
> Hong
> ------
> *From:* Varun Hiremath 
> *Sent:* Monday, January 17, 2022 12:41 PM
> *To:* Zhang, Hong 
> *Cc:* Jose E. Roman ; Peder Jørgensgaard Olesen via
> petsc-users 
> *Subject:* Re: [petsc-users] PETSc MUMPS interface
>
> Hi Hong,
>
> Thanks for looking into this. Here is the workflow that I might use:
>
> MatLUFactorSymbolic(F,A,perm,iperm,);
>
> // get memory estimates from MUMPS e.g. INFO(3), INFOG(16), INFOG(17)
> // find available memory on the system e.g. RAM size
> if (estimated_memory > available_memory)
> {
>// inform and stop; or
>// switch MUMPS to out-of-core factorization
>ICNTL(22) = 1;
> }
> else
> {
>// set appropriate settings for in-core factorization
> }
>
> // Now we call the solve and inside if MatLUFactorSymbolic is already
> called then it should be skipped
> EPSSolve(eps);
>
> Thanks,
> Varun
>
> On Mon, Jan 17, 2022 at 9:18 AM Zhang, Hong  wrote:
>
> Varun,
> I am trying to find a way to enable you to switch options after 
> MatLUFactorSymbolic().
> A hack is modifying the flag  'mumps->matstruc'
> inside  MatLUFactorSymbolic_AIJMUMPS() and MatFactorNumeric_MUMPS().
>
> My understanding of what you want is:
>   // collect mumps memory info
>   ...
>   MatLUFactorSymbolic(F,A,perm,iperm,);
>   printMumpsMemoryInfo(F);
>   //-
> if (memory is available) {
> EPSSolve(eps); --> skip calling of MatLUFactorSymbolic()
> } else {
>//out-of-core (OOC) option in MUMPS
> }
>
> Am I correct? I'll let you know once I work out a solution.
> Hong
>
> --
> *From:* Varun Hiremath 
> *Sent:* Sunday, January 16, 2022 10:10 PM
> *To:* Zhang, Hong 
> *Cc:* Jose E. Roman ; Peder Jørgensgaard Olesen via
> petsc-users 
> *Subject:* Re: [petsc-users] PETSc MUMPS interface
>
> Hi Jose, Hong,
>
> Thanks for the explanation. I have verified using -log_view that 
> MatLUFactorSymbolic
> is indeed getting called twice.
>
> Hong, we use MUMPS solver for other things, and we typically run the
> symbolic analysis first and get memory estimates to ensure that we have
> enough memory available to run the case. If the available memory is not
> enough, we can stop or switch to the out-of-core (OOC) option in MUMPS. We
> wanted to do the same when using MUMPS via SLEPc/PETSc. Please let me know
> if there are other ways of getting these memory stats and switching options
> during runtime with PETSc.
> Appreciate your help!
>
> Thanks,
> Varun
>
> On Sun, Jan 16, 2022 at 4:01 PM Zhang, Hong  wrote:
>
> Varun,
> I believe Jose is correct. You may verify it by running your code with
> option '-log_view', then check the number of calls to MatLUFactorSym.
>
> I guess I can add a flag in PCSetUp() to check if user has already called
> MatLUFactorSymbolic() and wants to skip it. Normally, users simply allocate
> sufficient memory in the symbolic factorization. Why do you want to check
> it?
> Hong
>
> --
> *From:* Jose E. Roman 
> *Sent:* Sunday, January 16, 2022 5:11 AM
> *To:* Varun Hiremath 
> *Cc:* Zhang, Hong ; Peder Jørgensgaard Olesen via
> petsc-users 
> *Subject:* Re: [petsc-users] PETSc MUMPS interface
>
> Hong may give a better answer, but if you look at PCSetUp_LU()
> https://petsc.org/main/src/ksp/pc/impls/factor/lu/lu.c.html#PCSetUp_LU
> you will see that MatLUFactorSymbolic() is called unconditionally during
> the first PCSetUp(). Currently there is no way to check if the user has
> already called MatLUFactorSymbolic().
>
> Jose
>
>
> > El 16 ene 2022, a las 10:40, Varun Hiremath 
> escribió:
> >
> > Hi Hong,
> >
> > Thank you, this is very helpful!
> >
> > Using this method I am able to get the memory estimates before the
> actual solve, however, I think my code may be causing the symbolic
> factorization to be run twice. Attached is

Re: [petsc-users] PETSc MUMPS interface

[Varun Hiremath]

Hi Hong,

Thanks for looking into this. Here is the workflow that I might use:

MatLUFactorSymbolic(F,A,perm,iperm,);

// get memory estimates from MUMPS e.g. INFO(3), INFOG(16), INFOG(17)
// find available memory on the system e.g. RAM size
if (estimated_memory > available_memory)
{
   // inform and stop; or
   // switch MUMPS to out-of-core factorization
   ICNTL(22) = 1;
}
else
{
   // set appropriate settings for in-core factorization
}

// Now we call the solve and inside if MatLUFactorSymbolic is already
called then it should be skipped
EPSSolve(eps);

Thanks,
Varun

On Mon, Jan 17, 2022 at 9:18 AM Zhang, Hong  wrote:

> Varun,
> I am trying to find a way to enable you to switch options after 
> MatLUFactorSymbolic().
> A hack is modifying the flag  'mumps->matstruc'
> inside  MatLUFactorSymbolic_AIJMUMPS() and MatFactorNumeric_MUMPS().
>
> My understanding of what you want is:
>   // collect mumps memory info
>   ...
>   MatLUFactorSymbolic(F,A,perm,iperm,);
>   printMumpsMemoryInfo(F);
>   //-
> if (memory is available) {
> EPSSolve(eps); --> skip calling of MatLUFactorSymbolic()
> } else {
>//out-of-core (OOC) option in MUMPS
> }
>
> Am I correct? I'll let you know once I work out a solution.
> Hong
>
> --
> *From:* Varun Hiremath 
> *Sent:* Sunday, January 16, 2022 10:10 PM
> *To:* Zhang, Hong 
> *Cc:* Jose E. Roman ; Peder Jørgensgaard Olesen via
> petsc-users 
> *Subject:* Re: [petsc-users] PETSc MUMPS interface
>
> Hi Jose, Hong,
>
> Thanks for the explanation. I have verified using -log_view that 
> MatLUFactorSymbolic
> is indeed getting called twice.
>
> Hong, we use MUMPS solver for other things, and we typically run the
> symbolic analysis first and get memory estimates to ensure that we have
> enough memory available to run the case. If the available memory is not
> enough, we can stop or switch to the out-of-core (OOC) option in MUMPS. We
> wanted to do the same when using MUMPS via SLEPc/PETSc. Please let me know
> if there are other ways of getting these memory stats and switching options
> during runtime with PETSc.
> Appreciate your help!
>
> Thanks,
> Varun
>
> On Sun, Jan 16, 2022 at 4:01 PM Zhang, Hong  wrote:
>
> Varun,
> I believe Jose is correct. You may verify it by running your code with
> option '-log_view', then check the number of calls to MatLUFactorSym.
>
> I guess I can add a flag in PCSetUp() to check if user has already called
> MatLUFactorSymbolic() and wants to skip it. Normally, users simply allocate
> sufficient memory in the symbolic factorization. Why do you want to check
> it?
> Hong
>
> --
> *From:* Jose E. Roman 
> *Sent:* Sunday, January 16, 2022 5:11 AM
> *To:* Varun Hiremath 
> *Cc:* Zhang, Hong ; Peder Jørgensgaard Olesen via
> petsc-users 
> *Subject:* Re: [petsc-users] PETSc MUMPS interface
>
> Hong may give a better answer, but if you look at PCSetUp_LU()
> https://petsc.org/main/src/ksp/pc/impls/factor/lu/lu.c.html#PCSetUp_LU
> you will see that MatLUFactorSymbolic() is called unconditionally during
> the first PCSetUp(). Currently there is no way to check if the user has
> already called MatLUFactorSymbolic().
>
> Jose
>
>
> > El 16 ene 2022, a las 10:40, Varun Hiremath 
> escribió:
> >
> > Hi Hong,
> >
> > Thank you, this is very helpful!
> >
> > Using this method I am able to get the memory estimates before the
> actual solve, however, I think my code may be causing the symbolic
> factorization to be run twice. Attached is my code where I am using SLEPc
> to compute eigenvalues, and I use MUMPS for factorization. I have commented
> above the code that computes the memory estimates, could you please check
> and tell me if this would cause the symbolic factor to be computed twice (a
> second time inside EPSSolve?), as I am seeing a slight increase in the
> overall computation time?
> >
> > Regards,
> > Varun
> >
> > On Wed, Jan 12, 2022 at 7:58 AM Zhang, Hong  wrote:
> > PCFactorSetMatSolverType(pc,MATSOLVERMUMPS);
> >   PCFactorSetUpMatSolverType(pc);
> >   PCFactorGetMatrix(pc,);
> >
> >   MatLUFactorSymbolic(F,A,...)
> >   You must provide row and column permutations etc,
> petsc/src/mat/tests/ex125.c may give you a clue on how to get these inputs.
> >
> > Hong
> >
> >
> > From: petsc-users  on behalf of
> Junchao Zhang 
> > Sent: Wednesday, January 12, 2022 9:03 AM
> > To: Varun Hiremath 
> > Cc: Peder Jørgensgaard Olesen via petsc-users 
> > Subject: Re: [petsc-users] PETSc MUMPS interface
> >
> > Calling PCSetUp() before

Re: [petsc-users] Inconsistent PETSc MUMPS statistics

[Varun Hiremath]

Hi Jose, Pierre,

Yes, I am not using ParMetis or Metis. This is how I am configuring PETSc:
$ ./configure --with-debugging=no --with-mpi-dir=
--with-scalar-type=complex --download-mumps --download-scalapack
--with-blaslapack-dir=

Would you happen to know if there is any option available to force MUMPS to
be deterministic/repeatable in parallel? I couldn't find anything in the
MUMPS user guide that suggests non-deterministic behavior.

For the example matrix that I shared, the final computed eigenvalues are
within machine precision on multiple runs. However, for some other bigger
cases that I am testing, I get different eigenvalues on multiple runs and I
am trying to figure out the source of these inconsistencies.

Thanks,
Varun

On Sun, Jan 16, 2022 at 6:09 AM Pierre Jolivet  wrote:

> Default renumbering is sequential. Since --download-parmetis requires
> --download-metis, I doubt Varun is using ParMETIS since the appropriate
> ICNTL flag is not explicitly set.
> If we go back to the original “issue”, I believe this is because you are
> doing an LU factorization with a large number of off diagonal pivots, check
> INFOG(12), which are handled dynamically, and thus may yield different
> factors.
>
> Thanks,
> Pierre
>
> > On 16 Jan 2022, at 12:28 PM, Jose E. Roman  wrote:
> >
> > Probably someone else can give a better answer, but if I remember
> correctly ParMetis relies on certain random number generator that makes it
> produce different partitions for different runs. I think this was fixed in
> the ParMetis that --download-parmetis installs, but if I am not wrong you
> are not using that version. This would explain what you get.
> >
> > Jose
> >
> >
> >> El 16 ene 2022, a las 11:37, Varun Hiremath 
> escribió:
> >>
> >> Hi All,
> >>
> >> I am using SLEPc to compute eigenvalues and MUMPS for factorization.
> >>
> >> Please find attached:
> >> 1) A simple test program slepc_eps_mumps_test.cpp that reads a given
> PETSc matrix and computes the smallest eigenvalues using MUMPS for
> factorization
> >> 2) An example PETSc matrix MatA of size 581343 rows (sending in .gz
> format via Google drive link, please extract it "gunzip MatA.gz" before
> using). You should be able to reproduce this issue with any other matrix of
> a similar or bigger size.
> >>
> >> I notice that when I run the attached test program in parallel with the
> attached test matrix the MUMPS statistics printed (using the -eps_view
> option in the command line) change with every run.
> >>
> >> This is how I run the test:
> >> $ mpiexec -n 24 ./slepc_eps_mumps_test.o -nev 5 -f MatA -eps_view
> >> and for example, the output of this includes the following MUMPS stats
> >> ...
> >> PC Object: (st_) 24 MPI processes
> >>type: lu
> >>  out-of-place factorization
> >>  tolerance for zero pivot 2.22045e-14
> >>  matrix ordering: external
> >>  factor fill ratio given 0., needed 0.
> >>Factored matrix follows:
> >>  Mat Object: 24 MPI processes
> >>type: mumps
> >>rows=581343, cols=581343
> >>package used to perform factorization: mumps
> >>total: nonzeros=348236349, allocated nonzeros=348236349
> >>  MUMPS run parameters:
> >>SYM (matrix type):   0
> >> ...
> >>
> >> I ran this test 10 times as follows and got a different number of
> nonzeros (line highlighted above ) reported in each run. (If you save the
> full output and compare, you will notice many other differences, but I
> wouldn't have expected the nonzeros to change with every run.)
> >>
> >> $ for i in `seq 1 10`; do echo "run $i :-"; mpiexec -n 24
> ./slepc_eps_mumps_test.o -nev 5 -f MatA -eps_view | grep -A 1
> "factorization: mumps"; done
> >>
> >> run 1 :-
> >>package used to perform factorization: mumps
> >>total: nonzeros=354789915, allocated nonzeros=354789915
> >> run 2 :-
> >>package used to perform factorization: mumps
> >>total: nonzeros=359811101, allocated nonzeros=359811101
> >> run 3 :-
> >>package used to perform factorization: mumps
> >>total: nonzeros=354834871, allocated nonzeros=354834871
> >> run 4 :-
> >>package used to perform factorization: mumps
> >>total: nonzeros=354830397, allocated nonzeros=354830397
> >> run 5 :-

Re: [petsc-users] PETSc MUMPS interface

[Varun Hiremath]

Hi Jose, Hong,

Thanks for the explanation. I have verified using -log_view that
MatLUFactorSymbolic
is indeed getting called twice.

Hong, we use MUMPS solver for other things, and we typically run the
symbolic analysis first and get memory estimates to ensure that we have
enough memory available to run the case. If the available memory is not
enough, we can stop or switch to the out-of-core (OOC) option in MUMPS. We
wanted to do the same when using MUMPS via SLEPc/PETSc. Please let me know
if there are other ways of getting these memory stats and switching options
during runtime with PETSc.
Appreciate your help!

Thanks,
Varun

On Sun, Jan 16, 2022 at 4:01 PM Zhang, Hong  wrote:

> Varun,
> I believe Jose is correct. You may verify it by running your code with
> option '-log_view', then check the number of calls to MatLUFactorSym.
>
> I guess I can add a flag in PCSetUp() to check if user has already called
> MatLUFactorSymbolic() and wants to skip it. Normally, users simply allocate
> sufficient memory in the symbolic factorization. Why do you want to check
> it?
> Hong
>
> --
> *From:* Jose E. Roman 
> *Sent:* Sunday, January 16, 2022 5:11 AM
> *To:* Varun Hiremath 
> *Cc:* Zhang, Hong ; Peder Jørgensgaard Olesen via
> petsc-users 
> *Subject:* Re: [petsc-users] PETSc MUMPS interface
>
> Hong may give a better answer, but if you look at PCSetUp_LU()
> https://petsc.org/main/src/ksp/pc/impls/factor/lu/lu.c.html#PCSetUp_LU
> you will see that MatLUFactorSymbolic() is called unconditionally during
> the first PCSetUp(). Currently there is no way to check if the user has
> already called MatLUFactorSymbolic().
>
> Jose
>
>
> > El 16 ene 2022, a las 10:40, Varun Hiremath 
> escribió:
> >
> > Hi Hong,
> >
> > Thank you, this is very helpful!
> >
> > Using this method I am able to get the memory estimates before the
> actual solve, however, I think my code may be causing the symbolic
> factorization to be run twice. Attached is my code where I am using SLEPc
> to compute eigenvalues, and I use MUMPS for factorization. I have commented
> above the code that computes the memory estimates, could you please check
> and tell me if this would cause the symbolic factor to be computed twice (a
> second time inside EPSSolve?), as I am seeing a slight increase in the
> overall computation time?
> >
> > Regards,
> > Varun
> >
> > On Wed, Jan 12, 2022 at 7:58 AM Zhang, Hong  wrote:
> > PCFactorSetMatSolverType(pc,MATSOLVERMUMPS);
> >   PCFactorSetUpMatSolverType(pc);
> >   PCFactorGetMatrix(pc,);
> >
> >   MatLUFactorSymbolic(F,A,...)
> >   You must provide row and column permutations etc,
> petsc/src/mat/tests/ex125.c may give you a clue on how to get these inputs.
> >
> > Hong
> >
> >
> > From: petsc-users  on behalf of
> Junchao Zhang 
> > Sent: Wednesday, January 12, 2022 9:03 AM
> > To: Varun Hiremath 
> > Cc: Peder Jørgensgaard Olesen via petsc-users 
> > Subject: Re: [petsc-users] PETSc MUMPS interface
> >
> > Calling PCSetUp() before KSPSetUp()?
> >
> > --Junchao Zhang
> >
> >
> > On Wed, Jan 12, 2022 at 3:00 AM Varun Hiremath 
> wrote:
> > Hi All,
> >
> > I want to collect MUMPS memory estimates based on the initial symbolic
> factorization analysis before the actual numerical factorization starts to
> check if the estimated memory requirements fit the available memory.
> >
> > I am following the steps from
> https://petsc.org/main/src/ksp/ksp/tutorials/ex52.c.html
> >
> >   PCFactorSetMatSolverType(pc,MATSOLVERMUMPS);
> >   PCFactorSetUpMatSolverType(pc);
> >   PCFactorGetMatrix(pc,);
> >
> >   KSPSetUp(ksp);
> >   MatMumpsGetInfog(F,...)
> >
> > But it appears KSPSetUp calls both symbolic and numerical factorization.
> So is there some other way to get these statistics before the actual
> factorization starts?
> >
> > Thanks,
> > Varun
> > 
>
>

Re: [petsc-users] PETSc MUMPS interface

[Varun Hiremath]

Hi Hong,

Thank you, this is very helpful!

Using this method I am able to get the memory estimates before the actual
solve, however, I think my code may be causing the symbolic
factorization to be run twice. Attached is my code where I am using SLEPc
to compute eigenvalues, and I use MUMPS for factorization. I have commented
above the code that computes the memory estimates, could you please check
and tell me if this would cause the symbolic factor to be computed twice (a
second time inside EPSSolve?), as I am seeing a slight increase in the
overall computation time?

Regards,
Varun

On Wed, Jan 12, 2022 at 7:58 AM Zhang, Hong  wrote:

> PCFactorSetMatSolverType(pc,MATSOLVERMUMPS);
>   PCFactorSetUpMatSolverType(pc);
>   PCFactorGetMatrix(pc,);
>
>   MatLUFactorSymbolic(F,A,...)
>   You must provide row and column permutations etc,
>   petsc/src/mat/tests/ex125.c may give you a clue on how to get these
> inputs.
>
> Hong
>
>
> --
> *From:* petsc-users  on behalf of
> Junchao Zhang 
> *Sent:* Wednesday, January 12, 2022 9:03 AM
> *To:* Varun Hiremath 
> *Cc:* Peder Jørgensgaard Olesen via petsc-users 
> *Subject:* Re: [petsc-users] PETSc MUMPS interface
>
> Calling PCSetUp() before KSPSetUp()?
>
> --Junchao Zhang
>
>
> On Wed, Jan 12, 2022 at 3:00 AM Varun Hiremath 
> wrote:
>
> Hi All,
>
> I want to collect MUMPS memory estimates based on the initial
> symbolic factorization analysis before the actual numerical factorization
> starts to check if the estimated memory requirements fit the available
> memory.
>
> I am following the steps from
> https://petsc.org/main/src/ksp/ksp/tutorials/ex52.c.html
>
>   PCFactorSetMatSolverType(pc,MATSOLVERMUMPS);
>   PCFactorSetUpMatSolverType(pc);
>   PCFactorGetMatrix(pc,);
>
>   KSPSetUp(ksp);
>   MatMumpsGetInfog(F,...)
>
> But it appears KSPSetUp calls both symbolic and numerical factorization.
> So is there some other way to get these statistics before the actual
> factorization starts?
>
> Thanks,
> Varun
>
>


slepc_eps_mumps_test.cpp
Description: Binary data

[petsc-users] PETSc MUMPS interface

[Varun Hiremath]

Hi All,

I want to collect MUMPS memory estimates based on the initial
symbolic factorization analysis before the actual numerical factorization
starts to check if the estimated memory requirements fit the available
memory.

I am following the steps from
https://petsc.org/main/src/ksp/ksp/tutorials/ex52.c.html

  PCFactorSetMatSolverType(pc,MATSOLVERMUMPS);
  PCFactorSetUpMatSolverType(pc);
  PCFactorGetMatrix(pc,);

  KSPSetUp(ksp);
  MatMumpsGetInfog(F,...)

But it appears KSPSetUp calls both symbolic and numerical factorization. So
is there some other way to get these statistics before the actual
factorization starts?

Thanks,
Varun

Re: [petsc-users] SLEPc: smallest eigenvalues

[Varun Hiremath]

Hi Jose,

I have now gotten the quadratic problem working decently using the PEP
package with appropriate scaling and preconditioning, so thanks for all the
suggestions! For the case where K is a shell matrix, I used a scaling based
on an approximation of K, and that seems to be working well.

So now that both linear and quadratic problems are working, I wanted to get
your suggestions on solving a non-linear problem. In some of our cases, we
have a non-linear source term S(lambda) on the right-hand side of the
equation as follows:
(K + lambda*C + lambda^2*M)*x = S(lambda)*x,
where the source can sometimes be simplified as S(lambda) =
exp(lambda*t)*A, where A is a constant matrix.

I am currently solving this non-linear problem iteratively. For each
eigenvalue, I compute the source and add it into the K matrix, and then
iterate until convergence. For this reason, I end up solving the system
multiple times which makes it very slow. I saw some examples of non-linear
problems included in the NEP package. I just wanted to get your thoughts if
I would benefit from using the NEP package for this particular problem?
Will I be able to use preconditioning and scaling as with the PEP package
to speed up the computation for the case where K is a shell matrix? Thanks
for your help.

Regards,
Varun


On Thu, Sep 30, 2021 at 10:12 PM Varun Hiremath 
wrote:

> Hi Jose,
>
> Thanks again for your valuable suggestions. I am still working on this but
> wanted to give you a quick update.
>
> For the linear problem, I tried different KSP solvers, and finally, I'm
> getting good convergence using CGS with LU (using MUMPS) inexact inverse.
> So thank you very much for your help!
>
> But for the quadratic problem, I'm still struggling. As you suggested, I
> have now started using the PEP solver. For the simple case where the K
> matrix is explicitly known, everything works fine. But for the case where K
> is a shell matrix, it struggles to converge. I am yet to try the scaling
> option and some other preconditioning options. I will get back to you on
> this if I have any questions. Appreciate your help!
>
> Thanks,
> Varun
>
> On Tue, Sep 28, 2021 at 8:09 AM Jose E. Roman  wrote:
>
>>
>>
>> > El 28 sept 2021, a las 7:50, Varun Hiremath 
>> escribió:
>> >
>> > Hi Jose,
>> >
>> > I implemented the LU factorized preconditioner and tested it using
>> PREONLY + LU, but that actually is converging to the wrong eigenvalues,
>> compared to just using BICGS + BJACOBI, or simply computing
>> EPS_SMALLEST_MAGNITUDE without any preconditioning. My preconditioning
>> matrix is only a 1st order approximation, and the off-diagonal terms are
>> not very accurate, so I'm guessing this is why the LU factorization doesn't
>> help much? Nonetheless, using BICGS + BJACOBI with slightly relaxed
>> tolerances seems to be working fine.
>>
>> If your PCMAT is not an exact inverse, then you have to iterate, i.e. not
>> use KSPPREONLY but KSPBCGS or another.
>>
>> >
>> > I now want to test the same preconditioning idea for a quadratic
>> problem. I am solving a quadratic equation similar to Eqn.(5.1) in the
>> SLEPc manual:
>> >   (K + lambda*C + lambda^2*M)*x = 0,
>> > I don't use the PEP package directly, but solve this by linearizing
>> similar to Eqn.(5.3) and calling EPS. Without explicitly forming the full
>> matrix, I just use the block matrix structure as explained in the below
>> example and that works nicely for my case:
>> > https://slepc.upv.es/documentation/current/src/eps/tutorials/ex9.c.html
>>
>> Using PEP is generally recommended. The default solver TOAR is
>> memory-efficient and performs less computation than a trivial
>> linearization. In addition, PEP allows you to do scaling, which is often
>> very important to get accurate results in some problems, depending on
>> conditioning.
>>
>> In your case K is a shell matrix, so things may not be trivial. If I am
>> not wrong, you should be able to use STSetPreconditionerMat() for a PEP,
>> where the preconditioner in this case should be built to approximate
>> Q(sigma), where Q(.) is the quadratic polynomial and sigma is the target.
>>
>> >
>> > In my case, K is not explicitly known, and for linear problems, where C
>> = 0, I am using a 1st order approximation of K as the preconditioner. Now
>> could you please tell me if there is a way to conveniently set the
>> preconditioner for the quadratic problem, which will be of the form [-K 0;
>> 0 I]? Note that K is constructed in parallel (the rows are distributed), so
>> I wasn't sure how to construct this preconditioner matrix which will be
>> compati

Re: [petsc-users] SLEPc: smallest eigenvalues

[Varun Hiremath]

Hi Jose,

Thanks again for your valuable suggestions. I am still working on this but
wanted to give you a quick update.

For the linear problem, I tried different KSP solvers, and finally, I'm
getting good convergence using CGS with LU (using MUMPS) inexact inverse.
So thank you very much for your help!

But for the quadratic problem, I'm still struggling. As you suggested, I
have now started using the PEP solver. For the simple case where the K
matrix is explicitly known, everything works fine. But for the case where K
is a shell matrix, it struggles to converge. I am yet to try the scaling
option and some other preconditioning options. I will get back to you on
this if I have any questions. Appreciate your help!

Thanks,
Varun

On Tue, Sep 28, 2021 at 8:09 AM Jose E. Roman  wrote:

>
>
> > El 28 sept 2021, a las 7:50, Varun Hiremath 
> escribió:
> >
> > Hi Jose,
> >
> > I implemented the LU factorized preconditioner and tested it using
> PREONLY + LU, but that actually is converging to the wrong eigenvalues,
> compared to just using BICGS + BJACOBI, or simply computing
> EPS_SMALLEST_MAGNITUDE without any preconditioning. My preconditioning
> matrix is only a 1st order approximation, and the off-diagonal terms are
> not very accurate, so I'm guessing this is why the LU factorization doesn't
> help much? Nonetheless, using BICGS + BJACOBI with slightly relaxed
> tolerances seems to be working fine.
>
> If your PCMAT is not an exact inverse, then you have to iterate, i.e. not
> use KSPPREONLY but KSPBCGS or another.
>
> >
> > I now want to test the same preconditioning idea for a quadratic
> problem. I am solving a quadratic equation similar to Eqn.(5.1) in the
> SLEPc manual:
> >   (K + lambda*C + lambda^2*M)*x = 0,
> > I don't use the PEP package directly, but solve this by linearizing
> similar to Eqn.(5.3) and calling EPS. Without explicitly forming the full
> matrix, I just use the block matrix structure as explained in the below
> example and that works nicely for my case:
> > https://slepc.upv.es/documentation/current/src/eps/tutorials/ex9.c.html
>
> Using PEP is generally recommended. The default solver TOAR is
> memory-efficient and performs less computation than a trivial
> linearization. In addition, PEP allows you to do scaling, which is often
> very important to get accurate results in some problems, depending on
> conditioning.
>
> In your case K is a shell matrix, so things may not be trivial. If I am
> not wrong, you should be able to use STSetPreconditionerMat() for a PEP,
> where the preconditioner in this case should be built to approximate
> Q(sigma), where Q(.) is the quadratic polynomial and sigma is the target.
>
> >
> > In my case, K is not explicitly known, and for linear problems, where C
> = 0, I am using a 1st order approximation of K as the preconditioner. Now
> could you please tell me if there is a way to conveniently set the
> preconditioner for the quadratic problem, which will be of the form [-K 0;
> 0 I]? Note that K is constructed in parallel (the rows are distributed), so
> I wasn't sure how to construct this preconditioner matrix which will be
> compatible with the shell matrix structure that I'm using to define the
> MatMult function as in ex9.
>
> The shell matrix of ex9.c interleaves the local parts of the first block
> and the second block. In other words, a process' local part consists of the
> local rows of the first block followed by the local rows of the second
> block. In your case, the local rows of K followed by the local rows of the
> identity (appropriately padded with zeros).
>
> Jose
>
>
> >
> > Thanks,
> > Varun
> >
> > On Fri, Sep 24, 2021 at 11:50 PM Varun Hiremath 
> wrote:
> > Ok, great! I will give that a try, thanks for your help!
> >
> > On Fri, Sep 24, 2021 at 11:12 PM Jose E. Roman 
> wrote:
> > Yes, you can use PCMAT
> https://petsc.org/release/docs/manualpages/PC/PCMAT.html then pass a
> preconditioner matrix that performs the inverse via a shell matrix.
> >
> > > El 25 sept 2021, a las 8:07, Varun Hiremath 
> escribió:
> > >
> > > Hi Jose,
> > >
> > > Thanks for checking my code and providing suggestions.
> > >
> > > In my particular case, I don't know the matrix A explicitly, I compute
> A*x in a matrix-free way within a shell matrix, so I can't use any of the
> direct factorization methods. But just a question regarding your suggestion
> to compute a (parallel) LU factorization. In our work, we do use MUMPS to
> compute the parallel factorization. For solving the generalized problem,
> A*x = lambda*B*x, we are computing inv(B)*A*x within a shell matrix,

Re: [petsc-users] SLEPc: smallest eigenvalues

[Varun Hiremath]

Hi Jose,

I implemented the LU factorized preconditioner and tested it using
PREONLY + LU, but that actually is converging to the wrong eigenvalues,
compared to just using BICGS + BJACOBI, or simply computing
EPS_SMALLEST_MAGNITUDE without any preconditioning. My preconditioning
matrix is only a 1st order approximation, and the off-diagonal terms are
not very accurate, so I'm guessing this is why the LU factorization doesn't
help much? Nonetheless, using BICGS + BJACOBI with slightly relaxed
tolerances seems to be working fine.

I now want to test the same preconditioning idea for a quadratic problem. I
am solving a quadratic equation similar to Eqn.(5.1) in the SLEPc manual:
  (K + lambda*C + lambda^2*M)*x = 0,
I don't use the PEP package directly, but solve this by linearizing similar
to Eqn.(5.3) and calling EPS. Without explicitly forming the full matrix, I
just use the block matrix structure as explained in the below example and
that works nicely for my case:
https://slepc.upv.es/documentation/current/src/eps/tutorials/ex9.c.html

In my case, K is not explicitly known, and for linear problems, where C =
0, I am using a 1st order approximation of K as the preconditioner. Now
could you please tell me if there is a way to conveniently set the
preconditioner for the quadratic problem, which will be of the form [-K 0;
0 I]? Note that K is constructed in parallel (the rows are distributed), so
I wasn't sure how to construct this preconditioner matrix which will be
compatible with the shell matrix structure that I'm using to define the
MatMult function as in ex9.

Thanks,
Varun

On Fri, Sep 24, 2021 at 11:50 PM Varun Hiremath 
wrote:

> Ok, great! I will give that a try, thanks for your help!
>
> On Fri, Sep 24, 2021 at 11:12 PM Jose E. Roman  wrote:
>
>> Yes, you can use PCMAT
>> https://petsc.org/release/docs/manualpages/PC/PCMAT.html then pass a
>> preconditioner matrix that performs the inverse via a shell matrix.
>>
>> > El 25 sept 2021, a las 8:07, Varun Hiremath 
>> escribió:
>> >
>> > Hi Jose,
>> >
>> > Thanks for checking my code and providing suggestions.
>> >
>> > In my particular case, I don't know the matrix A explicitly, I compute
>> A*x in a matrix-free way within a shell matrix, so I can't use any of the
>> direct factorization methods. But just a question regarding your suggestion
>> to compute a (parallel) LU factorization. In our work, we do use MUMPS to
>> compute the parallel factorization. For solving the generalized problem,
>> A*x = lambda*B*x, we are computing inv(B)*A*x within a shell matrix, where
>> factorization of B is computed using MUMPS. (We don't call MUMPS through
>> SLEPc as we have our own MPI wrapper and other user settings to handle.)
>> >
>> > So for the preconditioning, instead of using the iterative solvers, can
>> I provide a shell matrix that computes inv(P)*x corrections (where P is the
>> preconditioner matrix) using MUMPS direct solver?
>> >
>> > And yes, thanks, #define PETSC_USE_COMPLEX 1 is not needed, it works
>> without it.
>> >
>> > Regards,
>> > Varun
>> >
>> > On Fri, Sep 24, 2021 at 9:14 AM Jose E. Roman 
>> wrote:
>> > If you do
>> > $ ./acoustic_matrix_test.o -shell 0 -st_type sinvert -deflate 1
>> > then it is using an LU factorization (the default), which is fast.
>> >
>> > Use -eps_view to see which solver settings are you using.
>> >
>> > BiCGStab with block Jacobi does not work for you matrix, it exceeds the
>> maximum 1 iterations. So this is not viable unless you can find a
>> better preconditioner for your problem. If not, just using
>> EPS_SMALLEST_MAGNITUDE will be faster.
>> >
>> > Computing smallest magnitude eigenvalues is a difficult task. The most
>> robust way is to compute a (parallel) LU factorization if you can afford it.
>> >
>> >
>> > A side note: don't add this to your source code
>> > #define PETSC_USE_COMPLEX 1
>> > This define is taken from PETSc's include files, you should not mess
>> with it. Instead, you probably want to add something like this AFTER
>> #include :
>> > #if !defined(PETSC_USE_COMPLEX)
>> > #error "Requires complex scalars"
>> > #endif
>> >
>> > Jose
>> >
>> >
>> > > El 22 sept 2021, a las 19:38, Varun Hiremath 
>> escribió:
>> > >
>> > > Hi Jose,
>> > >
>> > > Thank you, that explains it and my example code works now without
>> specifying "-eps_target 0" in the command line.
>> > >
>> > > However, both the Krylo

Re: [petsc-users] SLEPc: smallest eigenvalues

[Varun Hiremath]

Ok, great! I will give that a try, thanks for your help!

On Fri, Sep 24, 2021 at 11:12 PM Jose E. Roman  wrote:

> Yes, you can use PCMAT
> https://petsc.org/release/docs/manualpages/PC/PCMAT.html then pass a
> preconditioner matrix that performs the inverse via a shell matrix.
>
> > El 25 sept 2021, a las 8:07, Varun Hiremath 
> escribió:
> >
> > Hi Jose,
> >
> > Thanks for checking my code and providing suggestions.
> >
> > In my particular case, I don't know the matrix A explicitly, I compute
> A*x in a matrix-free way within a shell matrix, so I can't use any of the
> direct factorization methods. But just a question regarding your suggestion
> to compute a (parallel) LU factorization. In our work, we do use MUMPS to
> compute the parallel factorization. For solving the generalized problem,
> A*x = lambda*B*x, we are computing inv(B)*A*x within a shell matrix, where
> factorization of B is computed using MUMPS. (We don't call MUMPS through
> SLEPc as we have our own MPI wrapper and other user settings to handle.)
> >
> > So for the preconditioning, instead of using the iterative solvers, can
> I provide a shell matrix that computes inv(P)*x corrections (where P is the
> preconditioner matrix) using MUMPS direct solver?
> >
> > And yes, thanks, #define PETSC_USE_COMPLEX 1 is not needed, it works
> without it.
> >
> > Regards,
> > Varun
> >
> > On Fri, Sep 24, 2021 at 9:14 AM Jose E. Roman 
> wrote:
> > If you do
> > $ ./acoustic_matrix_test.o -shell 0 -st_type sinvert -deflate 1
> > then it is using an LU factorization (the default), which is fast.
> >
> > Use -eps_view to see which solver settings are you using.
> >
> > BiCGStab with block Jacobi does not work for you matrix, it exceeds the
> maximum 1 iterations. So this is not viable unless you can find a
> better preconditioner for your problem. If not, just using
> EPS_SMALLEST_MAGNITUDE will be faster.
> >
> > Computing smallest magnitude eigenvalues is a difficult task. The most
> robust way is to compute a (parallel) LU factorization if you can afford it.
> >
> >
> > A side note: don't add this to your source code
> > #define PETSC_USE_COMPLEX 1
> > This define is taken from PETSc's include files, you should not mess
> with it. Instead, you probably want to add something like this AFTER
> #include :
> > #if !defined(PETSC_USE_COMPLEX)
> > #error "Requires complex scalars"
> > #endif
> >
> > Jose
> >
> >
> > > El 22 sept 2021, a las 19:38, Varun Hiremath 
> escribió:
> > >
> > > Hi Jose,
> > >
> > > Thank you, that explains it and my example code works now without
> specifying "-eps_target 0" in the command line.
> > >
> > > However, both the Krylov inexact shift-invert and JD solvers are
> struggling to converge for some of my actual problems. The issue seems to
> be related to non-symmetric general matrices. I have extracted one such
> matrix attached here as MatA.gz (size 100k), and have also included a short
> program that loads this matrix and then computes the smallest eigenvalues
> as I described earlier.
> > >
> > > For this matrix, if I compute the eigenvalues directly (without using
> the shell matrix) using shift-and-invert (as below) then it converges in
> less than a minute.
> > > $ ./acoustic_matrix_test.o -shell 0 -st_type sinvert -deflate 1
> > >
> > > However, if I use the shell matrix and use any of the preconditioned
> solvers JD or Krylov shift-invert (as shown below) with the same matrix as
> the preconditioner, then they struggle to converge.
> > > $ ./acoustic_matrix_test.o -usejd 1 -deflate 1
> > > $ ./acoustic_matrix_test.o -sinvert 1 -deflate 1
> > >
> > > Could you please check the attached code and suggest any changes in
> settings that might help with convergence for these kinds of matrices? I
> appreciate your help!
> > >
> > > Thanks,
> > > Varun
> > >
> > > On Tue, Sep 21, 2021 at 11:14 AM Jose E. Roman 
> wrote:
> > > I will have a look at your code when I have more time. Meanwhile, I am
> answering 3) below...
> > >
> > > > El 21 sept 2021, a las 0:23, Varun Hiremath 
> escribió:
> > > >
> > > > Hi Jose,
> > > >
> > > > Sorry, it took me a while to test these settings in the new builds.
> I am getting good improvement in performance using the preconditioned
> solvers, so thanks for the suggestions! But I have some questions related
> to the usage.
> > > >
> > > &g

Re: [petsc-users] SLEPc: smallest eigenvalues

[Varun Hiremath]

Hi Jose,

Thanks for checking my code and providing suggestions.

In my particular case, I don't know the matrix A explicitly, I compute A*x
in a matrix-free way within a shell matrix, so I can't use any of the
direct factorization methods. But just a question regarding your suggestion
to compute a (parallel) LU factorization. In our work, we do use MUMPS to
compute the parallel factorization. For solving the generalized problem,
A*x = lambda*B*x, we are computing inv(B)*A*x within a shell matrix, where
factorization of B is computed using MUMPS. (We don't call MUMPS through
SLEPc as we have our own MPI wrapper and other user settings to handle.)

So for the preconditioning, instead of using the iterative solvers, can I
provide a shell matrix that computes inv(P)*x corrections (where P is the
preconditioner matrix) using MUMPS direct solver?

And yes, thanks, #define PETSC_USE_COMPLEX 1 is not needed, it works
without it.

Regards,
Varun

On Fri, Sep 24, 2021 at 9:14 AM Jose E. Roman  wrote:

> If you do
> $ ./acoustic_matrix_test.o -shell 0 -st_type sinvert -deflate 1
> then it is using an LU factorization (the default), which is fast.
>
> Use -eps_view to see which solver settings are you using.
>
> BiCGStab with block Jacobi does not work for you matrix, it exceeds the
> maximum 1 iterations. So this is not viable unless you can find a
> better preconditioner for your problem. If not, just using
> EPS_SMALLEST_MAGNITUDE will be faster.
>
> Computing smallest magnitude eigenvalues is a difficult task. The most
> robust way is to compute a (parallel) LU factorization if you can afford it.
>
>
> A side note: don't add this to your source code
> #define PETSC_USE_COMPLEX 1
> This define is taken from PETSc's include files, you should not mess with
> it. Instead, you probably want to add something like this AFTER #include
> :
> #if !defined(PETSC_USE_COMPLEX)
> #error "Requires complex scalars"
> #endif
>
> Jose
>
>
> > El 22 sept 2021, a las 19:38, Varun Hiremath 
> escribió:
> >
> > Hi Jose,
> >
> > Thank you, that explains it and my example code works now without
> specifying "-eps_target 0" in the command line.
> >
> > However, both the Krylov inexact shift-invert and JD solvers are
> struggling to converge for some of my actual problems. The issue seems to
> be related to non-symmetric general matrices. I have extracted one such
> matrix attached here as MatA.gz (size 100k), and have also included a short
> program that loads this matrix and then computes the smallest eigenvalues
> as I described earlier.
> >
> > For this matrix, if I compute the eigenvalues directly (without using
> the shell matrix) using shift-and-invert (as below) then it converges in
> less than a minute.
> > $ ./acoustic_matrix_test.o -shell 0 -st_type sinvert -deflate 1
> >
> > However, if I use the shell matrix and use any of the preconditioned
> solvers JD or Krylov shift-invert (as shown below) with the same matrix as
> the preconditioner, then they struggle to converge.
> > $ ./acoustic_matrix_test.o -usejd 1 -deflate 1
> > $ ./acoustic_matrix_test.o -sinvert 1 -deflate 1
> >
> > Could you please check the attached code and suggest any changes in
> settings that might help with convergence for these kinds of matrices? I
> appreciate your help!
> >
> > Thanks,
> > Varun
> >
> > On Tue, Sep 21, 2021 at 11:14 AM Jose E. Roman 
> wrote:
> > I will have a look at your code when I have more time. Meanwhile, I am
> answering 3) below...
> >
> > > El 21 sept 2021, a las 0:23, Varun Hiremath 
> escribió:
> > >
> > > Hi Jose,
> > >
> > > Sorry, it took me a while to test these settings in the new builds. I
> am getting good improvement in performance using the preconditioned
> solvers, so thanks for the suggestions! But I have some questions related
> to the usage.
> > >
> > > We are using SLEPc to solve the acoustic modal eigenvalue problem.
> Attached is a simple standalone program that computes acoustic modes in a
> simple rectangular box. This program illustrates the general setup I am
> using, though here the shell matrix and the preconditioner matrix are the
> same, while in my actual program the shell matrix computes A*x without
> explicitly forming A, and the preconditioner is a 0th order approximation
> of A.
> > >
> > > In the attached program I have tested both
> > > 1) the Krylov-Schur with inexact shift-and-invert (implemented under
> the option sinvert);
> > > 2) the JD solver with preconditioner (implemented under the option
> usejd)
> > >
> > > Both the solvers seem t

Re: [petsc-users] SLEPc: smallest eigenvalues

[Varun Hiremath]

Hi Jose,

Sorry, it took me a while to test these settings in the new builds. I am
getting good improvement in performance using the preconditioned solvers,
so thanks for the suggestions! But I have some questions related to the
usage.

We are using SLEPc to solve the acoustic modal eigenvalue problem. Attached
is a simple standalone program that computes acoustic modes in a simple
rectangular box. This program illustrates the general setup I am using,
though here the shell matrix and the preconditioner matrix are the same,
while in my actual program the shell matrix computes A*x without explicitly
forming A, and the preconditioner is a 0th order approximation of A.

In the attached program I have tested both
1) the Krylov-Schur with inexact shift-and-invert (implemented under the
option sinvert);
2) the JD solver with preconditioner (implemented under the option usejd)

Both the solvers seem to work decently, compared to no preconditioning.
This is how I run the two solvers (for a mesh size of 1600x400):
$ ./acoustic_box_test.o -nx 1600 -ny 400 -usejd 1 -deflate 1 -eps_target 0
$ ./acoustic_box_test.o -nx 1600 -ny 400 -sinvert 1 -deflate 1 -eps_target 0
Both finish in about ~10 minutes on my system in serial. JD seems to be
slightly faster and more accurate (for the imaginary part of eigenvalue).
The program also runs in parallel using mpiexec. I use complex builds, as
in my main program the matrix can be complex.

Now here are my questions:
1) For this particular problem type, could you please check if these are
the best settings that one could use? I have tried different combinations
of KSP/PC types e.g. GMRES, GAMG, etc, but BCGSL + BJACOBI seems to work
the best in serial and parallel.

2) When I tested these settings in my main program, for some reason the JD
solver was not converging. After further testing, I found the issue was
related to the setting of "-eps_target 0". I have included "
EPSSetTarget(eps,0.0);" in the program and I assumed this is equivalent to
passing "-eps_target 0" from the command line, but that doesn't seem to be
the case. For instance, if I run the attached program without "-eps_target
0" in the command line then it doesn't converge.
$ ./acoustic_box_test.o -nx 1600 -ny 400 -usejd 1 -deflate 1 -eps_target 0
 the above finishes in about 10 minutes
$ ./acoustic_box_test.o -nx 1600 -ny 400 -usejd 1 -deflate 1
 the above doesn't converge even though "EPSSetTarget(eps,0.0);" is
included in the code

This only seems to affect the JD solver, not the Krylov shift-and-invert
(-sinvert 1) option. So is there any difference between passing "-eps_target
0" from the command line vs using "EPSSetTarget(eps,0.0);" in the code? I
cannot pass any command line arguments in my actual program, so need to set
everything internally.

3) Also, another minor related issue. While using the inexact
shift-and-invert option, I was running into the following error:

""
Missing or incorrect user input
Shift-and-invert requires a target 'which' (see EPSSetWhichEigenpairs), for
instance -st_type sinvert -eps_target 0 -eps_target_magnitude
""

I already have the below two lines in the code:
EPSSetWhichEigenpairs(eps,EPS_SMALLEST_MAGNITUDE);
EPSSetTarget(eps,0.0);

so shouldn't these be enough? If I comment out the first line
"EPSSetWhichEigenpairs", then the code works fine.

I have some more questions regarding setting the preconditioner for a
quadratic eigenvalue problem, which I will ask in a follow-up email.

Thanks for your help!

-Varun


On Thu, Jul 1, 2021 at 5:01 AM Varun Hiremath 
wrote:

> Thank you very much for these suggestions! We are currently using version
> 3.12, so I'll try to update to the latest version and try your suggestions.
> Let me get back to you, thanks!
>
> On Thu, Jul 1, 2021, 4:45 AM Jose E. Roman  wrote:
>
>> Then I would try Davidson methods https://doi.org/10.1145/2543696
>> You can also try Krylov-Schur with "inexact" shift-and-invert, for
>> instance, with preconditioned BiCGStab or GMRES, see section 3.4.1 of the
>> users manual.
>>
>> In both cases, you have to pass matrix A in the call to EPSSetOperators()
>> and the preconditioner matrix via STSetPreconditionerMat() - note this
>> function was introduced in version 3.15.
>>
>> Jose
>>
>>
>>
>> > El 1 jul 2021, a las 13:36, Varun Hiremath 
>> escribió:
>> >
>> > Thanks. I actually do have a 1st order approximation of matrix A, that
>> I can explicitly compute and also invert. Can I use that matrix as
>> preconditioner to speed things up? Is there some example that explains how
>> to setup and call SLEPc for this scenario?
>> >
>> > On Thu, Jul 1, 2021, 4:29 AM Jose E. Roman  wrote:
>> > For smallest real parts one could adapt 

Re: [petsc-users] SLEPc: smallest eigenvalues

[Varun Hiremath]

Thank you very much for these suggestions! We are currently using version
3.12, so I'll try to update to the latest version and try your suggestions.
Let me get back to you, thanks!

On Thu, Jul 1, 2021, 4:45 AM Jose E. Roman  wrote:

> Then I would try Davidson methods https://doi.org/10.1145/2543696
> You can also try Krylov-Schur with "inexact" shift-and-invert, for
> instance, with preconditioned BiCGStab or GMRES, see section 3.4.1 of the
> users manual.
>
> In both cases, you have to pass matrix A in the call to EPSSetOperators()
> and the preconditioner matrix via STSetPreconditionerMat() - note this
> function was introduced in version 3.15.
>
> Jose
>
>
>
> > El 1 jul 2021, a las 13:36, Varun Hiremath 
> escribió:
> >
> > Thanks. I actually do have a 1st order approximation of matrix A, that I
> can explicitly compute and also invert. Can I use that matrix as
> preconditioner to speed things up? Is there some example that explains how
> to setup and call SLEPc for this scenario?
> >
> > On Thu, Jul 1, 2021, 4:29 AM Jose E. Roman  wrote:
> > For smallest real parts one could adapt ex34.c, but it is going to be
> costly
> https://slepc.upv.es/documentation/current/src/eps/tutorials/ex36.c.html
> > Also, if eigenvalues are clustered around the origin, convergence may
> still be very slow.
> >
> > It is a tough problem, unless you are able to compute a good
> preconditioner of A (no need to compute the exact inverse).
> >
> > Jose
> >
> >
> > > El 1 jul 2021, a las 13:23, Varun Hiremath 
> escribió:
> > >
> > > I'm solving for the smallest eigenvalues in magnitude. Though is it
> cheaper to solve smallest in real part, as that might also work in my case?
> Thanks for your help.
> > >
> > > On Thu, Jul 1, 2021, 4:08 AM Jose E. Roman  wrote:
> > > Smallest eigenvalue in magnitude or real part?
> > >
> > >
> > > > El 1 jul 2021, a las 11:58, Varun Hiremath 
> escribió:
> > > >
> > > > Sorry, no both A and B are general sparse matrices (non-hermitian).
> So is there anything else I could try?
> > > >
> > > > On Thu, Jul 1, 2021 at 2:43 AM Jose E. Roman 
> wrote:
> > > > Is the problem symmetric (GHEP)? In that case, you can try LOBPCG on
> the pair (A,B). But this will likely be slow as well, unless you can
> provide a good preconditioner.
> > > >
> > > > Jose
> > > >
> > > >
> > > > > El 1 jul 2021, a las 11:37, Varun Hiremath <
> varunhirem...@gmail.com> escribió:
> > > > >
> > > > > Hi All,
> > > > >
> > > > > I am trying to compute the smallest eigenvalues of a generalized
> system A*x= lambda*B*x. I don't explicitly know the matrix A (so I am using
> a shell matrix with a custom matmult function) however, the matrix B is
> explicitly known so I compute inv(B)*A within the shell matrix and solve
> inv(B)*A*x = lambda*x.
> > > > >
> > > > > To compute the smallest eigenvalues it is recommended to solve the
> inverted system, but since matrix A is not explicitly known I can't invert
> the system. Moreover, the size of the system can be really big, and with
> the default Krylov solver, it is extremely slow. So is there a better way
> for me to compute the smallest eigenvalues of this system?
> > > > >
> > > > > Thanks,
> > > > > Varun
> > > >
> > >
> >
>
>

Re: [petsc-users] SLEPc: smallest eigenvalues

[Varun Hiremath]

Thanks. I actually do have a 1st order approximation of matrix A, that I
can explicitly compute and also invert. Can I use that matrix as
preconditioner to speed things up? Is there some example that explains how
to setup and call SLEPc for this scenario?

On Thu, Jul 1, 2021, 4:29 AM Jose E. Roman  wrote:

> For smallest real parts one could adapt ex34.c, but it is going to be
> costly
> https://slepc.upv.es/documentation/current/src/eps/tutorials/ex36.c.html
> Also, if eigenvalues are clustered around the origin, convergence may
> still be very slow.
>
> It is a tough problem, unless you are able to compute a good
> preconditioner of A (no need to compute the exact inverse).
>
> Jose
>
>
> > El 1 jul 2021, a las 13:23, Varun Hiremath 
> escribió:
> >
> > I'm solving for the smallest eigenvalues in magnitude. Though is it
> cheaper to solve smallest in real part, as that might also work in my case?
> Thanks for your help.
> >
> > On Thu, Jul 1, 2021, 4:08 AM Jose E. Roman  wrote:
> > Smallest eigenvalue in magnitude or real part?
> >
> >
> > > El 1 jul 2021, a las 11:58, Varun Hiremath 
> escribió:
> > >
> > > Sorry, no both A and B are general sparse matrices (non-hermitian). So
> is there anything else I could try?
> > >
> > > On Thu, Jul 1, 2021 at 2:43 AM Jose E. Roman 
> wrote:
> > > Is the problem symmetric (GHEP)? In that case, you can try LOBPCG on
> the pair (A,B). But this will likely be slow as well, unless you can
> provide a good preconditioner.
> > >
> > > Jose
> > >
> > >
> > > > El 1 jul 2021, a las 11:37, Varun Hiremath 
> escribió:
> > > >
> > > > Hi All,
> > > >
> > > > I am trying to compute the smallest eigenvalues of a generalized
> system A*x= lambda*B*x. I don't explicitly know the matrix A (so I am using
> a shell matrix with a custom matmult function) however, the matrix B is
> explicitly known so I compute inv(B)*A within the shell matrix and solve
> inv(B)*A*x = lambda*x.
> > > >
> > > > To compute the smallest eigenvalues it is recommended to solve the
> inverted system, but since matrix A is not explicitly known I can't invert
> the system. Moreover, the size of the system can be really big, and with
> the default Krylov solver, it is extremely slow. So is there a better way
> for me to compute the smallest eigenvalues of this system?
> > > >
> > > > Thanks,
> > > > Varun
> > >
> >
>
>

Re: [petsc-users] SLEPc: smallest eigenvalues

[Varun Hiremath]

I'm solving for the smallest eigenvalues in magnitude. Though is it cheaper
to solve smallest in real part, as that might also work in my case? Thanks
for your help.

On Thu, Jul 1, 2021, 4:08 AM Jose E. Roman  wrote:

> Smallest eigenvalue in magnitude or real part?
>
>
> > El 1 jul 2021, a las 11:58, Varun Hiremath 
> escribió:
> >
> > Sorry, no both A and B are general sparse matrices (non-hermitian). So
> is there anything else I could try?
> >
> > On Thu, Jul 1, 2021 at 2:43 AM Jose E. Roman  wrote:
> > Is the problem symmetric (GHEP)? In that case, you can try LOBPCG on the
> pair (A,B). But this will likely be slow as well, unless you can provide a
> good preconditioner.
> >
> > Jose
> >
> >
> > > El 1 jul 2021, a las 11:37, Varun Hiremath 
> escribió:
> > >
> > > Hi All,
> > >
> > > I am trying to compute the smallest eigenvalues of a generalized
> system A*x= lambda*B*x. I don't explicitly know the matrix A (so I am using
> a shell matrix with a custom matmult function) however, the matrix B is
> explicitly known so I compute inv(B)*A within the shell matrix and solve
> inv(B)*A*x = lambda*x.
> > >
> > > To compute the smallest eigenvalues it is recommended to solve the
> inverted system, but since matrix A is not explicitly known I can't invert
> the system. Moreover, the size of the system can be really big, and with
> the default Krylov solver, it is extremely slow. So is there a better way
> for me to compute the smallest eigenvalues of this system?
> > >
> > > Thanks,
> > > Varun
> >
>
>

Re: [petsc-users] SLEPc: smallest eigenvalues

[Varun Hiremath]

Sorry, no both A and B are general sparse matrices (non-hermitian). So is
there anything else I could try?

On Thu, Jul 1, 2021 at 2:43 AM Jose E. Roman  wrote:

> Is the problem symmetric (GHEP)? In that case, you can try LOBPCG on the
> pair (A,B). But this will likely be slow as well, unless you can provide a
> good preconditioner.
>
> Jose
>
>
> > El 1 jul 2021, a las 11:37, Varun Hiremath 
> escribió:
> >
> > Hi All,
> >
> > I am trying to compute the smallest eigenvalues of a generalized system
> A*x= lambda*B*x. I don't explicitly know the matrix A (so I am using a
> shell matrix with a custom matmult function) however, the matrix B is
> explicitly known so I compute inv(B)*A within the shell matrix and solve
> inv(B)*A*x = lambda*x.
> >
> > To compute the smallest eigenvalues it is recommended to solve the
> inverted system, but since matrix A is not explicitly known I can't invert
> the system. Moreover, the size of the system can be really big, and with
> the default Krylov solver, it is extremely slow. So is there a better way
> for me to compute the smallest eigenvalues of this system?
> >
> > Thanks,
> > Varun
>
>

[petsc-users] SLEPc: smallest eigenvalues

[Varun Hiremath]

Hi All,

I am trying to compute the smallest eigenvalues of a generalized system
A*x= lambda*B*x. I don't explicitly know the matrix A (so I am using a
shell matrix with a custom matmult function) however, the matrix B is
explicitly known so I compute inv(B)*A within the shell matrix and solve
inv(B)*A*x = lambda*x.

To compute the smallest eigenvalues it is recommended to solve the inverted
system, but since matrix A is not explicitly known I can't invert the
system. Moreover, the size of the system can be really big, and with the
default Krylov solver, it is extremely slow. So is there a better way for
me to compute the smallest eigenvalues of this system?

Thanks,
Varun

Accepted python-enable 4.8.1-1 (source amd64) into unstable, unstable

[Varun Hiremath]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Thu, 23 Jan 2020 16:04:30 -0800
Source: python-enable
Binary: python3-enable python3-enable-dbgsym
Architecture: source amd64
Version: 4.8.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Python Modules Team 

Changed-By: Varun Hiremath 
Description:
 python3-enable - Drawing and interaction packages (Python 3)
Closes: 937727
Changes:
 python-enable (4.8.1-1) unstable; urgency=medium
 .
   [ Ondřej Nový ]
   * d/control: Set Vcs-* to salsa.debian.org
   * d/watch: Use https protocol
   * d/control: Remove ancient X-Python-Version field
   * Convert git repository from git-dpm to gbp layout
 .
   [ Varun Hiremath ]
   * New upstream release
   * Switch to Python 3 (Closes: #937727)
   * Add python3-enable package
   * debian/rules: switch to dh-* and pybuild
   * d/patches:
 - Drop gcc5, fonttools, pillow, 0007-fix-FTBFS-with-SWIG-3 patches
 - Add cython_speedups patch to fix build with Python 3.8
 - Add disable_tests patch to disable a test requiring internet access
   * Add debian/source/options to ignore changes to _version.py files
   * Use debhelper-compat instead of debian/compat
   * Delete d/clean, d/pyversion, d/pydist-overrides
 .
   [ Scott Talbert ]
   * Update Build-Depends and Depends (remove last Py2 deps; add Py3)
   * Fix spurious executable permissions on file
   * Perform major update in d/copyright to DEP5 format
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Bug#937727: RM python-enable

[Varun Hiremath]

reassign -1 src:python-enable
retitle -1 python-enable: convert package to Python 3
thanks

Hi Dmitry,

Yes, sorry for the delay but I have finally gotten some time to spend on my
Debian packages. Thanks to you and Scott for taking care of traits,
traitsui and pyface! I plan to work on enable and chaco and update them to
Python 3.

Regards,
Varun

On Mon, Dec 9, 2019 at 2:36 AM Dmitry Shachnev  wrote:

> Hi Varun!
>
> On Sun, Dec 08, 2019 at 10:35:51PM -0500, Scott Talbert wrote:
> > Control: reassign -1 ftp.debian.org
> > Control: retitle -1 RM: python-enable -- RoQA; unmaintained; low popcon;
> blocking py2 removal; no rdeps
>
> I see you started working on python-enable in Git [1]. If you want to
> prevent
> removal of this package, please reassign this bug back to
> src:python-enable.
>
> But the Python 3 package will have to go through the NEW queue anyway, no
> matter if the old package is removed or not.
>
> [1]:
> https://salsa.debian.org/python-team/modules/python-enable/commits/master
>
> --
> Dmitry Shachnev
>

Bug#937727: RM python-enable

[Varun Hiremath]

reassign -1 src:python-enable
retitle -1 python-enable: convert package to Python 3
thanks

Hi Dmitry,

Yes, sorry for the delay but I have finally gotten some time to spend on my
Debian packages. Thanks to you and Scott for taking care of traits,
traitsui and pyface! I plan to work on enable and chaco and update them to
Python 3.

Regards,
Varun

On Mon, Dec 9, 2019 at 2:36 AM Dmitry Shachnev  wrote:

> Hi Varun!
>
> On Sun, Dec 08, 2019 at 10:35:51PM -0500, Scott Talbert wrote:
> > Control: reassign -1 ftp.debian.org
> > Control: retitle -1 RM: python-enable -- RoQA; unmaintained; low popcon;
> blocking py2 removal; no rdeps
>
> I see you started working on python-enable in Git [1]. If you want to
> prevent
> removal of this package, please reassign this bug back to
> src:python-enable.
>
> But the Python 3 package will have to go through the NEW queue anyway, no
> matter if the old package is removed or not.
>
> [1]:
> https://salsa.debian.org/python-team/modules/python-enable/commits/master
>
> --
> Dmitry Shachnev
>

Bug#934264: Please update (4.6.2?) and provide/switch to python3

[Varun Hiremath]

Hi Yaroslav and Andreas,

On Fri, Aug 9, 2019 at 6:57 AM Yaroslav Halchenko 
wrote:

> > Remark: Since it seems the package is not really maintained by the
> > Uploader inside the PAPT team and entering the PAPT team might take a
> > bit longer I'd consider it a sensible step to take over the package to
> > Debian Science team to enable more people an easy access to the
> > repository.  I'm not keen on "nursing" merge requests of grown up
> > Python developers just because these are not part of PAPT team.
>
> well -- I guess that should be cleared up with the PAPT team / original
> uploaders (at least with Varun ?  any objections?)
>

I currently don't have time to work on mayav2 package, but feel free to
move it to Debain Science team repository if it helps with maintaining this
package, I don't have any objections.

Thanks,
Varun

Accepted searchmonkey 0.8.3-1 (source amd64) into unstable

[Varun Hiremath]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Fri, 23 Mar 2018 13:32:19 -0400
Source: searchmonkey
Binary: searchmonkey
Architecture: source amd64
Version: 0.8.3-1
Distribution: unstable
Urgency: medium
Maintainer: Varun Hiremath <va...@debian.org>
Changed-By: Varun Hiremath <va...@debian.org>
Description:
 searchmonkey - search files using regular expressions aiming to replace 
find/gre
Changes:
 searchmonkey (0.8.3-1) unstable; urgency=medium
 .
   * New upstream release
   * d/control: Add Build-Depends intltool, libzip-dev, libpoppler-glib-dev
   * Update Vcs fields to new debian git repository
   * Remove patches that are merged upstream
   * Update debian/compat to 9
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Accepted python-enable 4.5.1-4 (source amd64) into unstable

[Varun Hiremath]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Wed, 10 Jan 2018 12:39:19 -0500
Source: python-enable
Binary: python-enable
Architecture: source amd64
Version: 4.5.1-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Python Modules Team 
<python-modules-t...@lists.alioth.debian.org>
Changed-By: Varun Hiremath <va...@debian.org>
Description:
 python-enable - Drawing and interaction packages
Closes: 878671
Changes:
 python-enable (4.5.1-4) unstable; urgency=medium
 .
   * Change dependency from fonttools to python-fonttools (Closes: #878671)
   * Bump Standards-Version to 4.1.2
   * Bump debian/compat to 9
   * Remove debian/pycompat file
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Bug#878671: marked as pending

[Varun Hiremath]

tag 878671 pending
thanks

Hello,

Bug #878671 reported by you has been fixed in the Git repository. You can
see the changelog below, and you can check the diff of the fix at:


https://anonscm.debian.org/cgit/python-modules/packages/python-enable.git/commit/?id=5a05a58

---
commit 5a05a588d6d78ec054398a424890e812d6d66fc1
Author: Varun Hiremath <va...@debian.org>
Date:   Wed Jan 10 12:42:09 2018 -0500

Change dependency from fonttools to python-fonttools

diff --git a/debian/changelog b/debian/changelog
index f6af232..00c42cd 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,11 @@
+python-enable (4.5.1-4) unstable; urgency=medium
+
+  * Change dependency from fonttools to python-fonttools (Closes: #878671)
+  * Bump Standards-Version to 4.1.2
+  * Bump compat to 9
+
+ -- Varun Hiremath <va...@debian.org>  Wed, 10 Jan 2018 12:39:19 -0500
+
 python-enable (4.5.1-3) unstable; urgency=medium
 
   * Team upload.

Accepted dvipng 1.15-1 (source amd64) into unstable

[Varun Hiremath]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Tue, 09 Jan 2018 23:30:45 -0500
Source: dvipng
Binary: dvipng
Architecture: source amd64
Version: 1.15-1
Distribution: unstable
Urgency: medium
Maintainer: Varun Hiremath <va...@debian.org>
Changed-By: Varun Hiremath <va...@debian.org>
Description:
 dvipng - convert DVI files to PNG graphics
Closes: 712570 778524 810364 880766
Changes:
 dvipng (1.15-1) unstable; urgency=medium
 .
   * New upstream release (Closes: #810364)
   * New release fixes segfaults (Closes: #778524, #712570)
   * Build-Depends: replace libgd2-noxpm-dev with libgd-dev (Closes: #880766)
   * Update Standards-Version to 4.1.2
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Accepted python-traits 4.6.0-1 (source amd64) into unstable

[Varun Hiremath]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Thu, 24 Nov 2016 01:07:10 -0500
Source: python-traits
Binary: python-traits python3-traits
Architecture: source amd64
Version: 4.6.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Python Modules Team 
<python-modules-t...@lists.alioth.debian.org>
Changed-By: Varun Hiremath <va...@debian.org>
Description:
 python-traits - Manifest typing and reactive programming for Python (Python 2)
 python3-traits - Manifest typing and reactive programming for Python (Python 3)
Closes: 830377
Changes:
 python-traits (4.6.0-1) unstable; urgency=medium
 .
   * New upstream release (Closes: #830377)
   * debian/patches:
 - all removed; merged upstream
 - add disable_test.diff to disable failing unittests
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Accepted mayavi2 4.5.0-1 (source amd64) into unstable

[Varun Hiremath]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Wed, 26 Oct 2016 23:07:22 -0400
Source: mayavi2
Binary: mayavi2
Architecture: source amd64
Version: 4.5.0-1
Distribution: unstable
Urgency: medium
Maintainer: Python Applications Packaging Team 
<python-apps-t...@lists.alioth.debian.org>
Changed-By: Varun Hiremath <va...@debian.org>
Description:
 mayavi2- scientific visualization package for 2-D and 3-D data
Closes: 835144 839802 839872
Changes:
 mayavi2 (4.5.0-1) unstable; urgency=medium
 .
   * New upstream release (Closes: #835144)
   * Add p/tvtk_setup.diff (Closes: #839802, #839872)
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Accepted pychess 0.12.2-1 (source all) into unstable

[Varun Hiremath]

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Format: 1.8
Date: Wed, 17 Feb 2016 19:14:32 -0500
Source: pychess
Binary: pychess
Architecture: source all
Version: 0.12.2-1
Distribution: unstable
Urgency: medium
Maintainer: Varun Hiremath <va...@debian.org>
Changed-By: Varun Hiremath <va...@debian.org>
Description:
 pychess- Chess graphical user interface for several chess engines
Closes: 738010
Changes:
 pychess (0.12.2-1) unstable; urgency=medium
 .
   * New upstream release
   * Add pychess.xpm icon and install it to /usr/share/pixmaps.
   * Add menu file, thanks to Markus Koschany (Closes: #738010)
   * Remove patches/
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Accepted pychess 0.12-3 (source all) into unstable

[Varun Hiremath]

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Format: 1.8
Date: Tue, 24 Nov 2015 22:45:58 -0500
Source: pychess
Binary: pychess
Architecture: source all
Version: 0.12-3
Distribution: unstable
Urgency: medium
Maintainer: Varun Hiremath <va...@debian.org>
Changed-By: Varun Hiremath <va...@debian.org>
Description:
 pychess- Chess graphical user interface for several chess engines
Closes: 785922 805022
Changes:
 pychess (0.12-3) unstable; urgency=medium
 .
   * d/control: Update Depends (Closes: #785922, #805022)
   * Update Vcs fields to new debian git repository
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Accepted pychess 0.12-1 (source all) into unstable

[Varun Hiremath]

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Hash: SHA512

Format: 1.8
Date: Tue, 03 Nov 2015 20:26:05 -0500
Source: pychess
Binary: pychess
Architecture: source all
Version: 0.12-1
Distribution: unstable
Urgency: medium
Maintainer: Varun Hiremath <va...@debian.org>
Changed-By: Varun Hiremath <va...@debian.org>
Description:
 pychess- Chess graphical user interface for several chess engines
Closes: 785922 790153
Changes:
 pychess (0.12-1) unstable; urgency=medium
 .
   * New upstream release
   * d/control: update Depends
  - replace python-rsvg with gir1.2-rsvg-2.0 (Closes: #790153)
  - switch to gstreamer1.0-plugins-base (Closes: #785922)
   * Update d/watch file
   * Update Standards-Version to 3.9.6
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Accepted pychess 0.12-2 (source all) into unstable

[Varun Hiremath]

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Format: 1.8
Date: Tue, 03 Nov 2015 22:58:14 -0500
Source: pychess
Binary: pychess
Architecture: source all
Version: 0.12-2
Distribution: unstable
Urgency: medium
Maintainer: Varun Hiremath <va...@debian.org>
Changed-By: Varun Hiremath <va...@debian.org>
Description:
 pychess- Chess graphical user interface for several chess engines
Changes:
 pychess (0.12-2) unstable; urgency=medium
 .
   * d/control: Fix Depends python-gtk2
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Accepted mayavi2 4.4.3-2 (source amd64) into unstable

[Varun Hiremath]

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Date: Fri, 16 Oct 2015 18:39:34 -0400
Source: mayavi2
Binary: mayavi2
Architecture: source amd64
Version: 4.4.3-2
Distribution: unstable
Urgency: medium
Maintainer: Python Applications Packaging Team 
<python-apps-t...@lists.alioth.debian.org>
Changed-By: Varun Hiremath <va...@debian.org>
Description:
 mayavi2- scientific visualization package for 2-D and 3-D data
Changes:
 mayavi2 (4.4.3-2) unstable; urgency=medium
 .
   * Add the missing changes from Olly Betts NMU (4.3.1-3.1)
   * d/control: Add dh-python to BD
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Accepted mayavi2 4.4.3-1 (source amd64) into unstable

[Varun Hiremath]

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Hash: SHA512

Format: 1.8
Date: Mon, 12 Oct 2015 21:52:54 -0400
Source: mayavi2
Binary: mayavi2
Architecture: source amd64
Version: 4.4.3-1
Distribution: unstable
Urgency: medium
Maintainer: Python Applications Packaging Team 
<python-apps-t...@lists.alioth.debian.org>
Changed-By: Varun Hiremath <va...@debian.org>
Description:
 mayavi2- scientific visualization package for 2-D and 3-D data
Closes: 784839 798169
Changes:
 mayavi2 (4.4.3-1) unstable; urgency=medium
 .
   * New upstream release (Closes: #784839)
   * Bump Standards-Version to 3.9.6
   * d/control: BD on python-vtk6 (Closes: #798169)
   * Fix d/watch file
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Accepted python-enable 4.5.1-2 (source amd64) into unstable

[Varun Hiremath]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Sun, 27 Sep 2015 00:33:58 -0400
Source: python-enable
Binary: python-enable
Architecture: source amd64
Version: 4.5.1-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Python Modules Team 
<python-modules-t...@lists.alioth.debian.org>
Changed-By: Varun Hiremath <va...@debian.org>
Description:
 python-enable - Drawing and interaction packages
Closes: 797483
Changes:
 python-enable (4.5.1-2) unstable; urgency=medium
 .
   [ Philip Chimento ]
   * Add patch to build package without optimization (Closes: #797483)
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Accepted python-scipy 0.16.0-1 (source amd64 all) into unstable

[Varun Hiremath]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Sun, 23 Aug 2015 23:01:46 -0400
Source: python-scipy
Binary: python-scipy python3-scipy python-scipy-dbg python3-scipy-dbg 
python-scipy-doc
Architecture: source amd64 all
Version: 0.16.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Python Modules Team 
python-modules-t...@lists.alioth.debian.org
Changed-By: Varun Hiremath va...@debian.org
Description:
 python-scipy - scientific tools for Python
 python-scipy-dbg - scientific tools for Python - debugging symbols
 python-scipy-doc - scientific library for Python - documentation
 python3-scipy - scientific tools for Python 3
 python3-scipy-dbg - scientific tools for Python 3 - debugging symbols
Changes:
 python-scipy (0.16.0-1) unstable; urgency=medium
 .
   [ Varun Hiremath ]
   * New upstream release
   * Bump Standards-Version to 3.9.6
   * Remove upstream applied patches:
 - fitpack-alias.patch
 - fix-undefined-behavior-in-alngam.patch
 - relax-bounds-of-interpolate-test.patch
   * d/rules: minor build fixes
 .
   [ Jean-Christophe Jaskula ]
   * Pointed debian/watch to github.com (cleaner sources)
   * d/control:
 - Added dh_python to B-d
 - Removed unnecessary XS-Testsuite field
   * Linking to local javascript libraries
 - use_local_mathjax.patch
   * Using local intersphinx objects
 - use_local_objects.patch
   * Cleaned debian/copyright
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Accepted python-traits 4.5.0-1 (source amd64) into unstable, unstable

[Varun Hiremath]

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Hash: SHA512

Format: 1.8
Date: Sun, 16 Aug 2015 20:39:49 -0400
Source: python-traits
Binary: python-traits python3-traits
Architecture: source amd64
Version: 4.5.0-1
Distribution: unstable
Urgency: low
Maintainer: Debian Python Modules Team 
python-modules-t...@lists.alioth.debian.org
Changed-By: Varun Hiremath va...@debian.org
Description:
 python-traits - Manifest typing and reactive programming for Python (Python 2)
 python3-traits - Manifest typing and reactive programming for Python (Python 3)
Changes:
 python-traits (4.5.0-1) unstable; urgency=low
 .
   [ Jean-Christophe Jaskula ]
   * New upstream release
   * Building python3 package
   * Bump Standards-Version to 3.9.6 (no changes needed)
   * Dropped cdbs in favor of dh-* and pybuild
   * debian/patches/
 - remove_testing_dependencies_class.patch: Remove unused, undocumented
   ImportManager and ImportSpy classes, needed for python23 compatibility
   (from upstream)
 - py3_sort_fix.patch: Fix TraitListObject.sort for Python 3, along with
   tests. (from upstream)
 - invalid_tokens_fix.patch: Fix the trait_documenter machinery. (upstream)
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Accepted python-apptools 4.3.0-1 (source all) into unstable

[Varun Hiremath]

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Hash: SHA512

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Date: Mon, 10 Aug 2015 00:28:51 -0400
Source: python-apptools
Binary: python-apptools
Architecture: source all
Version: 4.3.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Python Modules Team 
python-modules-t...@lists.alioth.debian.org
Changed-By: Varun Hiremath va...@debian.org
Description:
 python-apptools - ETS Application Tools
Changes:
 python-apptools (4.3.0-1) unstable; urgency=medium
 .
   * New upstream release
   * Bump Standards-Version to 3.9.6
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Accepted python-pyface 4.5.2-1 (source all) into unstable

[Varun Hiremath]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Sun, 16 Aug 2015 22:13:14 -0400
Source: python-pyface
Binary: python-pyface
Architecture: source all
Version: 4.5.2-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Python Modules Team 
python-modules-t...@lists.alioth.debian.org
Changed-By: Varun Hiremath va...@debian.org
Description:
 python-pyface - traits-capable windowing framework
Changes:
 python-pyface (4.5.2-1) unstable; urgency=medium
 .
   * New upstream release
   * Acknowledge previous NMU, thanks!
   * Bump Standards-Version to 3.9.6
   * Fix the watch file
   * Refresh the wxpy3.0-compat.patch file
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python-pyface_4.5.2-1.debian.tar.xz
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Accepted python-traitsui 4.5.1-1 (source all) into unstable

[Varun Hiremath]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Sun, 16 Aug 2015 21:41:09 -0400
Source: python-traitsui
Binary: python-traitsui
Architecture: source all
Version: 4.5.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Python Modules Team 
python-modules-t...@lists.alioth.debian.org
Changed-By: Varun Hiremath va...@debian.org
Description:
 python-traitsui - traits-capable user interfaces
Changes:
 python-traitsui (4.5.1-1) unstable; urgency=medium
 .
   * New upstream release
   * Acknowledge previous NMU changes, thanks
   * Bump Standards-Version to 3.9.6
   * Fix the watch file
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Accepted python-chaco 4.5.0-1 (source amd64) into unstable

[Varun Hiremath]

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Hash: SHA512

Format: 1.8
Date: Mon, 17 Aug 2015 00:27:59 -0400
Source: python-chaco
Binary: python-chaco
Architecture: source amd64
Version: 4.5.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Python Modules Team 
python-modules-t...@lists.alioth.debian.org
Changed-By: Varun Hiremath va...@debian.org
Description:
 python-chaco - interactive plotting application toolkit
Changes:
 python-chaco (4.5.0-1) unstable; urgency=medium
 .
   * New upstream release
   * Acknowledge previous NMUs, thanks!
   * Bump Standards-Version to 3.9.6
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python-chaco_4.5.0-1.debian.tar.xz
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Accepted python-enable 4.5.1-1 (source amd64) into unstable

[Varun Hiremath]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Sun, 16 Aug 2015 22:24:29 -0400
Source: python-enable
Binary: python-enable
Architecture: source amd64
Version: 4.5.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Python Modules Team 
python-modules-t...@lists.alioth.debian.org
Changed-By: Varun Hiremath va...@debian.org
Description:
 python-enable - Drawing and interaction packages
Changes:
 python-enable (4.5.1-1) unstable; urgency=medium
 .
   * New upstream release
   * Acknowledge previous NMUs, many thanks!
   * Bump Standards-Version to 3.9.6
   * Fix the watch file
   * Update all the patch files
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Accepted mayavi2 4.3.1-4 (source amd64) into unstable

[Varun Hiremath]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Tue, 26 May 2015 10:08:07 -0400
Source: mayavi2
Binary: mayavi2
Architecture: source amd64
Version: 4.3.1-4
Distribution: unstable
Urgency: medium
Maintainer: Python Applications Packaging Team 
python-apps-t...@lists.alioth.debian.org
Changed-By: Varun Hiremath va...@debian.org
Description:
 mayavi2- scientific visualization package for 2-D and 3-D data
Closes: 785627
Changes:
 mayavi2 (4.3.1-4) unstable; urgency=medium
 .
   * Add a patch to fix python interpreter (Closes: #785627)
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Accepted gaviotatb 0.4-2 (source amd64 all) into unstable

[Varun Hiremath]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Tue, 20 Jan 2015 23:56:15 -0500
Source: gaviotatb
Binary: libgaviotatb-dev libgaviotatb1 gaviotatb
Architecture: source amd64 all
Version: 0.4-2
Distribution: unstable
Urgency: medium
Maintainer: Varun Hiremath va...@debian.org
Changed-By: Varun Hiremath va...@debian.org
Description:
 gaviotatb  - Gaviota chess endgame tablebases
 libgaviotatb-dev - Gaviota chess endgame tablebase probing library
 libgaviotatb1 - Gaviota chess endgame tablebase probing library (development 
pack
Closes: 775699
Changes:
 gaviotatb (0.4-2) unstable; urgency=medium
 .
   * Incorporate patch by Mathieu Malaterre, fix linking errors
 (Closes: #775699)
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Bug#775880: unblock: gaviotatb/0.4-2

[Varun Hiremath]

Package: release.debian.org
Severity: normal
User: release.debian@packages.debian.org
Usertags: unblock

Please unblock package gaviotatb

Fixes an RC bug: #775699

Last set of changes:
http://anonscm.debian.org/cgit/users/varun/gaviotatb.git/commit/?id=c42dc56b8ed203d15368923891af5674b529b9fc

unblock gaviotatb/0.4-2

-- System Information:
Debian Release: 7.0
  APT prefers unstable
  APT policy: (500, 'unstable')
Architecture: amd64 (x86_64)
Foreign Architectures: i386

Kernel: Linux 3.12-1-amd64 (SMP w/4 CPU cores)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)


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Bug#775880: unblock: gaviotatb/0.4-2

[Varun Hiremath]

Package: release.debian.org
Severity: normal
User: release.debian@packages.debian.org
Usertags: unblock

Please unblock package gaviotatb

Fixes an RC bug: #775699

Last set of changes:
http://anonscm.debian.org/cgit/users/varun/gaviotatb.git/commit/?id=c42dc56b8ed203d15368923891af5674b529b9fc

unblock gaviotatb/0.4-2

-- System Information:
Debian Release: 7.0
  APT prefers unstable
  APT policy: (500, 'unstable')
Architecture: amd64 (x86_64)
Foreign Architectures: i386

Kernel: Linux 3.12-1-amd64 (SMP w/4 CPU cores)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)


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Accepted python-pyface 4.4.0-2 (source all) into unstable

[Varun Hiremath]

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Hash: SHA512

Format: 1.8
Date: Wed, 03 Sep 2014 00:10:14 -0400
Source: python-pyface
Binary: python-pyface
Architecture: source all
Version: 4.4.0-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Python Modules Team 
python-modules-t...@lists.alioth.debian.org
Changed-By: Varun Hiremath va...@debian.org
Description:
 python-pyface - traits-capable windowing framework
Closes: 757313
Changes:
 python-pyface (4.4.0-2) unstable; urgency=medium
 .
   [ Olly Betts ]
   * Update for wxpython3.0 (Closes: #757313):
 + New patch: wxpy3.0-compat.patch
 .
   [ Varun Hiremath ]
   * Apply patch provided by Olly Betts, thanks!
   * Acknowledge last NMU by Jonathan Wiltshire, thanks!
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Accepted mayavi2 4.3.1-3 (source amd64)

[Varun Hiremath]

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Format: 1.8
Date: Tue, 17 Jun 2014 02:37:52 -0400
Source: mayavi2
Binary: mayavi2
Architecture: source amd64
Version: 4.3.1-3
Distribution: unstable
Urgency: medium
Maintainer: Python Applications Packaging Team 
python-apps-t...@lists.alioth.debian.org
Changed-By: Varun Hiremath va...@debian.org
Description:
 mayavi2- scientific visualization package for 2-D and 3-D data
Closes: 746762
Changes:
 mayavi2 (4.3.1-3) unstable; urgency=medium
 .
   * d/rules: remove references to pyshared (Closes: #746762)
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Accepted python-chaco 4.4.1-1 (source amd64)

[Varun Hiremath]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Sat, 15 Mar 2014 22:52:33 -0400
Source: python-chaco
Binary: python-chaco
Architecture: source amd64
Version: 4.4.1-1
Distribution: unstable
Urgency: low
Maintainer: Debian Python Modules Team 
python-modules-t...@lists.alioth.debian.org
Changed-By: Varun Hiremath va...@debian.org
Description: 
 python-chaco - interactive plotting application toolkit
Closes: 649473
Changes: 
 python-chaco (4.4.1-1) unstable; urgency=low
 .
   [ Varun Hiremath ]
   * New upstream release
   * d/control: Fix upstream Homepage URL (Closes: #649473)
   * Bump Standards-Version to 3.9.5
 .
   [ Jakub Wilk ]
   * Use canonical URIs for Vcs-* fields.
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Accepted python-apptools 4.2.1-1 (source all)

[Varun Hiremath]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Sat, 15 Mar 2014 22:47:59 -0400
Source: python-apptools
Binary: python-apptools
Architecture: source all
Version: 4.2.1-1
Distribution: unstable
Urgency: low
Maintainer: Debian Python Modules Team 
python-modules-t...@lists.alioth.debian.org
Changed-By: Varun Hiremath va...@debian.org
Description: 
 python-apptools - ETS Application Tools
Changes: 
 python-apptools (4.2.1-1) unstable; urgency=low
 .
   [ Jakub Wilk ]
   * Use canonical URIs for Vcs-* fields.
 .
   [ Varun Hiremath ]
   * New upstream release
   * Bump Standards-Version to 3.9.5
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Accepted python-traitsui 4.4.0-1 (source all)

[Varun Hiremath]

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Format: 1.8
Date: Sat, 15 Mar 2014 23:52:35 -0400
Source: python-traitsui
Binary: python-traitsui
Architecture: source all
Version: 4.4.0-1
Distribution: unstable
Urgency: low
Maintainer: Debian Python Modules Team 
python-modules-t...@lists.alioth.debian.org
Changed-By: Varun Hiremath va...@debian.org
Description: 
 python-traitsui - traits-capable user interfaces
Changes: 
 python-traitsui (4.4.0-1) unstable; urgency=low
 .
   [ Jakub Wilk ]
   * Use canonical URIs for Vcs-* fields.
 .
   [ Varun Hiremath ]
   * New upstream release
   * Bump Standards-Version to 3.9.5
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Accepted python-pyface 4.4.0-1 (source all)

[Varun Hiremath]

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Date: Sat, 15 Mar 2014 23:44:36 -0400
Source: python-pyface
Binary: python-pyface
Architecture: source all
Version: 4.4.0-1
Distribution: unstable
Urgency: low
Maintainer: Debian Python Modules Team 
python-modules-t...@lists.alioth.debian.org
Changed-By: Varun Hiremath va...@debian.org
Description: 
 python-pyface - traits-capable windowing framework
Changes: 
 python-pyface (4.4.0-1) unstable; urgency=low
 .
   [ Jakub Wilk ]
   * Use canonical URIs for Vcs-* fields.
 .
   [ Varun Hiremath ]
   * New upstream release
   * Bump Standards-Version to 3.9.5
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Accepted python-traits 4.4.0-1 (source amd64)

[Varun Hiremath]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Sat, 15 Mar 2014 23:48:58 -0400
Source: python-traits
Binary: python-traits
Architecture: source amd64
Version: 4.4.0-1
Distribution: unstable
Urgency: low
Maintainer: Debian Python Modules Team 
python-modules-t...@lists.alioth.debian.org
Changed-By: Varun Hiremath va...@debian.org
Description: 
 python-traits - Manifest typing and reactive programming for Python
Closes: 673638
Changes: 
 python-traits (4.4.0-1) unstable; urgency=low
 .
   [ Jakub Wilk ]
   * Use canonical URIs for Vcs-* fields.
 .
   [ Varun Hiremath ]
   * New upstream release
   * d/rules: Remove reference to pyshared (Closes: #673638)
   * Bump Standards-Version to 3.9.5
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Accepted python-enable 4.3.0-1 (source amd64)

[Varun Hiremath]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Sat, 15 Mar 2014 23:02:32 -0400
Source: python-enable
Binary: python-enable
Architecture: source amd64
Version: 4.3.0-1
Distribution: unstable
Urgency: low
Maintainer: Debian Python Modules Team 
python-modules-t...@lists.alioth.debian.org
Changed-By: Varun Hiremath va...@debian.org
Description: 
 python-enable - Drawing and interaction packages
Closes: 715145
Changes: 
 python-enable (4.3.0-1) unstable; urgency=low
 .
   [ Jakub Wilk ]
   * Use canonical URIs for Vcs-* fields.
 .
   [ Varun Hiremath ]
   * New upstream release
   * Remove embedded fonttools from upstream sources (Closes: #715145)
   * Add fonttools to Depends
   * Bump Standards-Version to 3.9.5
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Accepted python-envisage 4.4.0-1 (source all)

[Varun Hiremath]

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Hash: SHA512

Format: 1.8
Date: Sat, 15 Mar 2014 23:41:54 -0400
Source: python-envisage
Binary: python-envisage
Architecture: source all
Version: 4.4.0-1
Distribution: unstable
Urgency: low
Maintainer: Debian Python Modules Team 
python-modules-t...@lists.alioth.debian.org
Changed-By: Varun Hiremath va...@debian.org
Description: 
 python-envisage - Extensible Application Framework
Changes: 
 python-envisage (4.4.0-1) unstable; urgency=low
 .
   [ Jakub Wilk ]
   * Use canonical URIs for Vcs-* fields.
 .
   [ Varun Hiremath ]
   * New upstream release
   * Bump Standards-Version to 3.9.5
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Accepted mayavi2 4.3.1-2 (source amd64)

[Varun Hiremath]

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Hash: SHA512

Format: 1.8
Date: Sun, 16 Mar 2014 00:01:01 -0400
Source: mayavi2
Binary: mayavi2
Architecture: source amd64
Version: 4.3.1-2
Distribution: unstable
Urgency: low
Maintainer: Python Applications Packaging Team 
python-apps-t...@lists.alioth.debian.org
Changed-By: Varun Hiremath va...@debian.org
Description: 
 mayavi2- scientific visualization package for 2-D and 3-D data
Closes: 678051
Changes: 
 mayavi2 (4.3.1-2) unstable; urgency=low
 .
   [ Varun Hiremath ]
   * New upstream release
   * d/rules: Add missing jquery.js links (Closes: #678051)
   * Bump Standards-Version to 3.9.5
 .
   [ Jakub Wilk ]
   * Use canonical URIs for Vcs-* fields.
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Bug#720881: RM: python-traitsbackendqt -- ROM; Package superseded by python-traitsui

[Varun Hiremath]

Package: ftp.debian.org
Severity: normal

Hi,

This package is replaced by python-traitsui and so can be removed.

Thanks,
Varun


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Bug#720882: RM: python-traitsbackendwx -- ROM; Package superseded by python-traitsui

[Varun Hiremath]

Package: ftp.debian.org
Severity: normal

Hi,

This package is replaced by python-traitsui and thus can be removed.

Thanks,
Varun


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Bug#720884: RM: python-traitsgui -- ROM; Package superseded by python-traitsui

[Varun Hiremath]

Package: ftp.debian.org
Severity: normal

Hi,

This package is superseded by python-traitsui and thus can be removed.

Thanks,
Varun


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Bug#720886: RM: python-envisageplugins -- ROM; Package superseded by python-envisage

[Varun Hiremath]

Package: ftp.debian.org
Severity: normal

Hi,

This package is replaced by python-envisage and thus can be removed.

Thanks,
Varun


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Bug#720885: RM: python-envisagecore -- ROM; Package superseded by python-envisage

[Varun Hiremath]

Package: ftp.debian.org
Severity: normal

Hi,

This package is replaced by python-envisage and thus can be removed.

Thanks,
Varun


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Accepted pidgin-festival 2.4-3 (source i386)

[Varun Hiremath]

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Format: 1.8
Date: Thu, 15 Aug 2013 22:33:29 -0400
Source: pidgin-festival
Binary: pidgin-festival
Architecture: source i386
Version: 2.4-3
Distribution: unstable
Urgency: low
Maintainer: Varun Hiremath va...@debian.org
Changed-By: Varun Hiremath va...@debian.org
Description: 
 pidgin-festival - pidgin plugin to hear incoming messages using voice synthesis
Closes: 576920 680535
Changes: 
 pidgin-festival (2.4-3) unstable; urgency=low
 .
   * Add patches/errno.diff, thanks to Pino Toscano p...@debian.org,
 fixes build on GNU/Hurd (Closes: #680535)
   * Add German translation, thanks to Chris Leick c.le...@vollbio.de
 (Closes: #576920)
   * Bump Standards-Version to 3.9.4
   * Update Vcs fields to the new git repository
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Accepted xpuzzles 7.7.1-1 (source i386)

[Varun Hiremath]

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Hash: SHA512

Format: 1.8
Date: Sat, 10 Aug 2013 20:40:57 -0400
Source: xpuzzles
Binary: xpuzzles xmpuzzles
Architecture: source i386
Version: 7.7.1-1
Distribution: unstable
Urgency: low
Maintainer: Varun Hiremath va...@debian.org
Changed-By: Varun Hiremath va...@debian.org
Description: 
 xmpuzzles  - collection of puzzles for X (Motif version)
 xpuzzles   - collection of puzzles for X (plain X version)
Closes: 657595 714676
Changes: 
 xpuzzles (7.7.1-1) unstable; urgency=low
 .
   * New upstream release
   * Build-Depends replace lesstif2-dev with libmotif-dev (Closes: #714676)
   * Add Build-Depnds libaudiofile-dev (Closes: #657595)
   * Add a patch linkaudio.diff to fix linking with libaudiofile
   * Switch to source format 3
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Accepted searchmonkey 0.8.1-9 (source i386)

[Varun Hiremath]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Sun, 11 Aug 2013 20:06:47 -0400
Source: searchmonkey
Binary: searchmonkey
Architecture: source i386
Version: 0.8.1-9
Distribution: unstable
Urgency: low
Maintainer: Varun Hiremath va...@debian.org
Changed-By: Varun Hiremath va...@debian.org
Description: 
 searchmonkey - search files using regular expressions aiming to replace 
find/gre
Closes: 625643 663661 705849
Changes: 
 searchmonkey (0.8.1-9) unstable; urgency=low
 .
   [ Benjamin Kerensa ]
   * Add self as co-maintainer
 .
   [ Varun Hiremath ]
   * Fix a typo in the desktop file (Closes: #663661)
   * Add a patch fix-crash.diff to fix crashes, thanks to Peter
 pe...@pblackman.plus.com (Closes: #625643)
   * Update build.diff patch to fix broken link (Closes: #705849)
   * Update Standards-Version to 3.9.4
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Accepted dvipng 1.14-2 (source i386)

[Varun Hiremath]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Sat, 10 Aug 2013 19:03:50 -0400
Source: dvipng
Binary: dvipng
Architecture: source i386
Version: 1.14-2
Distribution: unstable
Urgency: low
Maintainer: Varun Hiremath va...@debian.org
Changed-By: Varun Hiremath va...@debian.org
Description: 
 dvipng - convert DVI files to PNG graphics
Changes: 
 dvipng (1.14-2) unstable; urgency=low
 .
   * Build-Depends replace libpng12-dev with libpng-dev
   * Update Standards-Version to 3.9.4
   * Update Vcs locations to the new git repository
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Bug#719337: O: cone -- COnsole Newsreader and Emailer

[Varun Hiremath]

Package: wnpp
Severity: normal

I no longer have time to maintian the cone package, and so I am hereby 
orphaning this package.

Thanks,
Varun


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Bug#719337: O: cone -- COnsole Newsreader and Emailer

[Varun Hiremath]

Package: wnpp
Severity: normal

I no longer have time to maintian the cone package, and so I am hereby 
orphaning this package.

Thanks,
Varun


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Accepted pychess 0.12~beta3-1 (source all)

[Varun Hiremath]

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Format: 1.8
Date: Mon, 05 Aug 2013 19:53:19 -0400
Source: pychess
Binary: pychess
Architecture: source all
Version: 0.12~beta3-1
Distribution: unstable
Urgency: low
Maintainer: Varun Hiremath va...@debian.org
Changed-By: Varun Hiremath va...@debian.org
Description: 
 pychess- chess graphical user interface for several chess engines
Closes: 657494 685473 703560 708827
Changes: 
 pychess (0.12~beta3-1) unstable; urgency=low
 .
   * New upstream release (Closes: #708827, #657494)
   * d/control: Add gstreamer0.10-plugins-base to Depends
 (Closes: #703560, #685473)
   * d/control: add libgaviotatb1 and gaviotatb to Depends
   * d/patches: remove executable.diff; update setup_docs.diff
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Accepted gaviotatb 0.4-1 (source i386 all)

[Varun Hiremath]

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Hash: SHA512

Format: 1.8
Date: Sun, 02 Jun 2013 15:26:15 -0400
Source: gaviotatb
Binary: libgaviotatb-dev libgaviotatb1 gaviotatb
Architecture: source i386 all
Version: 0.4-1
Distribution: unstable
Urgency: low
Maintainer: Varun Hiremath va...@debian.org
Changed-By: Varun Hiremath va...@debian.org
Description: 
 gaviotatb  - Gaviota chess endgame tablebases
 libgaviotatb-dev - Gaviota chess endgame tablebase probing library
 libgaviotatb1 - Gaviota chess endgame tablebase probing library
Changes: 
 gaviotatb (0.4-1) unstable; urgency=low
 .
   * Initial release
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Re: Advice regarding chess engine database files license

[Varun Hiremath]

Hi!

MJ Ray mjr at phonecoop.coop writes:

 
 Paul Wise pabs at debian.org
  On Wed, Jun 5, 2013 at 6:13 PM, MJ Ray wrote:
   The Gaviota Engine licence shouldn't apply to the database files. See
   http://www.gnu.org/licenses/gpl-faq.html#GPLOutput for a similar topic.
  
  Sounds like they should go to contrib though, due to the non-free build-dep?
 
 If the database files need to be built by the Gaviota Engine, I think.
 I don't know it well enough to say.
 
 Hope that helps,

Some small database (compressed) files are included in the upstream sources
and other larger ones can be downloaded from this site:
http://www.olympuschess.com/egtb/gaviota/

So, if we can consider these database files as output files, then I think
these are good to go to main. However, if these should be treated as
binary files which must be generated from the Gaviota Engine, then these
should go to contrib. Can I assume the former and upload these to main?

Thanks,
Varun





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Advice regarding chess engine database files license

[Varun Hiremath]

Hello All,

I am considering packaging Gaviota chess tablebase files and probing
code for Debian released under this MIT license:
https://sites.google.com/site/gaviotachessengine/license

The chess tablebase files are generated by the Gaviota Engine whose
license is clearly not DFSG compatible. However, the author is
releasing the generated database files under the MIT license. Is the
MIT license for these database files DFSG compatible?  There is an
accompanying probing code (used for reading the database files) which
is also available under the MIT license.

https://sites.google.com/site/gaviotachessengine/Home/endgame-tablebases-1


The Gaviota Tablebases can be probed from your own program (engine or
interface). The code needed to do this has been released under the
liberal MIT license, so basically anybody can use it with almost no
restrictions. The tablebase files themselves, compressed (*.gtb.cp?)
and uncompressed (*.gtb) are also distributed under the MIT license.

https://sites.google.com/site/gaviotachessengine/Home/endgame-tablebases-1

I maintain a package pychess which wants to use these database files.

Thanks,
Varun


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Accepted afuse 0.4.1-1 (source i386)

[Varun Hiremath]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Thu, 30 May 2013 23:36:35 -0400
Source: afuse
Binary: afuse
Architecture: source i386
Version: 0.4.1-1
Distribution: unstable
Urgency: low
Maintainer: Varun Hiremath va...@debian.org
Changed-By: Varun Hiremath va...@debian.org
Description: 
 afuse  - automounting file system implemented in user-space using FUSE
Changes: 
 afuse (0.4.1-1) unstable; urgency=low
 .
   * New upstream release
   * d/control: update Homepage
   * d/copyright updated
   * Switch to source format 3.0
   * d/patches - removed; merged upstream
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Bug#685446: unblock: model-builder/0.4.1-6

[Varun Hiremath]

Package: release.debian.org
Severity: normal
User: release.debian@packages.debian.org
Usertags: unblock

Please unblock model-builder/0.4.1-6. Updating model-builder fixes an
RC bug: #684681

unblock model-builder/0.4.1-6

Changes:
 model-builder (0.4.1-6) unstable; urgency=high
   * Update patches/use_wx2.8.diff:
 - disable import of matplotlib.numerix, which is not used and no
   longer available (Closes: #684681)
 - fix the MB.ico icon load path

Thanks,
Varun


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Bug#685449: unblock: pytimechart/1.0.0~rc1-3

[Varun Hiremath]

Package: release.debian.org
Severity: normal
User: release.debian@packages.debian.org
Usertags: unblock

Please unblock pytimechart/1.0.0~rc1-3. Updating pytimechart fixes an
RC bug: #684779

unblock pytimechart/1.0.0~rc1-3

Changes:
 pytimechart (1.0.0~rc1-3) unstable; urgency=high
 .
   [ Andrew Starr-Bochicchio ]
   * debian/control: Depend on python-gtk2 (Closes: #684779).
   * Add extend-diff-ignore=^[^/]+\.egg-info/ to debian/source/options.
 This allows the package to build twice in a row (Closes: #671148).
 .
   [ Varun Hiremath ]
   * Set urgency high, fixes RC bug.

Thanks,
Varun


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Bug#685446: unblock: model-builder/0.4.1-6

[Varun Hiremath]

Package: release.debian.org
Severity: normal
User: release.debian@packages.debian.org
Usertags: unblock

Please unblock model-builder/0.4.1-6. Updating model-builder fixes an
RC bug: #684681

unblock model-builder/0.4.1-6

Changes:
 model-builder (0.4.1-6) unstable; urgency=high
   * Update patches/use_wx2.8.diff:
 - disable import of matplotlib.numerix, which is not used and no
   longer available (Closes: #684681)
 - fix the MB.ico icon load path

Thanks,
Varun


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Bug#685449: unblock: pytimechart/1.0.0~rc1-3

[Varun Hiremath]

Package: release.debian.org
Severity: normal
User: release.debian@packages.debian.org
Usertags: unblock

Please unblock pytimechart/1.0.0~rc1-3. Updating pytimechart fixes an
RC bug: #684779

unblock pytimechart/1.0.0~rc1-3

Changes:
 pytimechart (1.0.0~rc1-3) unstable; urgency=high
 .
   [ Andrew Starr-Bochicchio ]
   * debian/control: Depend on python-gtk2 (Closes: #684779).
   * Add extend-diff-ignore=^[^/]+\.egg-info/ to debian/source/options.
 This allows the package to build twice in a row (Closes: #671148).
 .
   [ Varun Hiremath ]
   * Set urgency high, fixes RC bug.

Thanks,
Varun


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Accepted pytimechart 1.0.0~rc1-3 (source all)

[Varun Hiremath]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Thu, 16 Aug 2012 19:13:32 -0400
Source: pytimechart
Binary: pytimechart
Architecture: source all
Version: 1.0.0~rc1-3
Distribution: unstable
Urgency: high
Maintainer: Python Applications Packaging Team 
python-apps-t...@lists.alioth.debian.org
Changed-By: Varun Hiremath va...@debian.org
Description: 
 pytimechart - GUI Viewer for Linux kernel traces
Closes: 671148 684779
Changes: 
 pytimechart (1.0.0~rc1-3) unstable; urgency=high
 .
   [ Andrew Starr-Bochicchio ]
   * debian/control: Depend on python-gtk2 (Closes: #684779).
   * Add extend-diff-ignore=^[^/]+\.egg-info/ to debian/source/options.
 This allows the package to build twice in a row (Closes: #671148).
 .
   [ Varun Hiremath ]
   * Set urgency high, fixes RC bug.
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pytimechart_1.0.0~rc1-3.dsc
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pytimechart_1.0.0~rc1-3.debian.tar.gz
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Accepted model-builder 0.4.1-6 (source all)

[Varun Hiremath]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Thu, 16 Aug 2012 20:03:58 -0400
Source: model-builder
Binary: model-builder
Architecture: source all
Version: 0.4.1-6
Distribution: unstable
Urgency: high
Maintainer: Varun Hiremath va...@debian.org
Changed-By: Varun Hiremath va...@debian.org
Description: 
 model-builder - graphical ODE simulator
Closes: 684681
Changes: 
 model-builder (0.4.1-6) unstable; urgency=high
 .
   * Update patches/use_wx2.8.diff:
 - disable import of matplotlib.numerix, which is not used and no
   longer available (Closes: #684681)
 - fix the MB.ico icon load path
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Bug#671148: [Python-apps-team] Bug#671148: Patch for 671148 and 684779

[Varun Hiremath]

Hi Andrew,

On Thu, Aug 16, 2012 at 5:53 PM, Andrew Starr-Bochicchio
a.star...@gmail.com wrote:
 tags 671148 patch
 tags 684779 patch
 thanks

 Hi,

 The attached debdiff resolves both #671148 and #684779. As #684779 is
 a RC bug, if I don't hear a reply in a few days I will seek a sponsor
 for a NMU.

I have uploaded a new package with your changes; thanks for the patch.

-Varun


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Bug#684779: [Python-apps-team] Bug#671148: Patch for 671148 and 684779

[Varun Hiremath]

Hi Andrew,

On Thu, Aug 16, 2012 at 5:53 PM, Andrew Starr-Bochicchio
a.star...@gmail.com wrote:
 tags 671148 patch
 tags 684779 patch
 thanks

 Hi,

 The attached debdiff resolves both #671148 and #684779. As #684779 is
 a RC bug, if I don't hear a reply in a few days I will seek a sponsor
 for a NMU.

I have uploaded a new package with your changes; thanks for the patch.

-Varun


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Bug#651058: New version uploaded to unstable

[Varun Hiremath]

Hello,

I uploaded a new version of pidgin-libnotify (0.14-9) to unstable.
Could you please check if this bug is still reproducible with the new
version?

Thanks,
Varun


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Bug#651058: New version uploaded to unstable

[Varun Hiremath]

Hello,

I uploaded a new version of pidgin-libnotify (0.14-9) to unstable.
Could you please check if this bug is still reproducible with the new
version?

Thanks,
Varun


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unblock: pidgin-libnotify/0.14-9

[Varun Hiremath]

Hi,

Please unblock pidgin-libnotify/0.14-9, it fixes RC bug: #651058.

unblock pidgin-libnotify/0.14-9

Thanks,
Varun

p.s. please CC me, I'm not subscribed to debian-release.


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Accepted pidgin-libnotify 0.14-9 (source amd64)

[Varun Hiremath]

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Hash: SHA512

Format: 1.8
Date: Wed, 08 Aug 2012 16:01:15 -0400
Source: pidgin-libnotify
Binary: pidgin-libnotify
Architecture: source amd64
Version: 0.14-9
Distribution: unstable
Urgency: low
Maintainer: Varun Hiremath va...@debian.org
Changed-By: Varun Hiremath va...@debian.org
Description: 
 pidgin-libnotify - display notification bubbles in pidgin
Changes: 
 pidgin-libnotify (0.14-9) unstable; urgency=low
 .
   * Merge changes from Ubuntu
 - d/control: add Build-Depends: libindicate-dev, libindicate-gtk-dev
 - add patches: best_name.patch, libnotify_0_7.patch, force-load.patch,
   indicate.patch, update others
 - remove patches: fix-libnotify0.7-compatibility.diff, fix-notify-osd.diff,
   transient-hint-on-event-notifications.diff, fix-printf-warnings.diff,
   chat-nick-test-optional.diff
   * Update debian/rules based on Ubuntu changes
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Accepted python-scipy 0.10.1+dfsg1-4 (source amd64)

[Varun Hiremath]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Sat, 21 Jul 2012 17:23:02 -0400
Source: python-scipy
Binary: python-scipy python3-scipy python-scipy-dbg python3-scipy-dbg
Architecture: source amd64
Version: 0.10.1+dfsg1-4
Distribution: unstable
Urgency: low
Maintainer: Debian Python Modules Team 
python-modules-t...@lists.alioth.debian.org
Changed-By: Varun Hiremath va...@debian.org
Description: 
 python-scipy - scientific tools for Python
 python-scipy-dbg - scientific tools for Python - debugging symbols
 python3-scipy - scientific tools for Python 3
 python3-scipy-dbg - scientific tools for Python 3 - debugging symbols
Closes: 681270 682030
Changes: 
 python-scipy (0.10.1+dfsg1-4) unstable; urgency=low
 .
   [ Julian Taylor ]
   * use dh_numpy3
 - build depend on python3-numpy = 1:1.6.2~rc1-1~
   * debian/rules: remove reference to pyshared
 .
   [ Varun Hiremath ]
   * debian/patches:
 - add dtype.diff (Closes: #682030)
 - add up_minpack_ints.diff, thanks to Yaroslav Halchenko (Closes: #681270)
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python3-scipy-dbg_0.10.1+dfsg1-4_amd64.deb

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Bug#677421: mayavi2: segfaults as soon as a module is loaded

[Varun Hiremath]

Hi Francesco,

On Mon, Jul 2, 2012 at 1:24 PM, Francesco Poli
invernom...@paranoici.org wrote:
 Wait a second, I noticed an important thing!

 It seems that there's a huge difference in how I add modules
 in step 1 (see my original bug report).

 First possibility: in the tree-like view of the objects, I click on +
 Add module or filter (under VTK XML file (fire_ug.vtu)), then in the
 Mayavi object editor (Visualization modules tab) I double-click on
 Streamline.
 Booom! Segmentation fault!

Got it! I can also reproduce the segfault now :-(. I was using the 4th
option: adding modules from the Visualize menu, which works fine. This
looks like a bug in mayavi2, because other options work fine.
I will forward this upstream, thanks.

-Varun



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Bug#677421: mayavi2: segfaults as soon as a module is loaded

[Varun Hiremath]

Hi Francesco,

On Mon, Jul 2, 2012 at 1:24 PM, Francesco Poli
invernom...@paranoici.org wrote:
 Wait a second, I noticed an important thing!

 It seems that there's a huge difference in how I add modules
 in step 1 (see my original bug report).

 First possibility: in the tree-like view of the objects, I click on +
 Add module or filter (under VTK XML file (fire_ug.vtu)), then in the
 Mayavi object editor (Visualization modules tab) I double-click on
 Streamline.
 Booom! Segmentation fault!

Got it! I can also reproduce the segfault now :-(. I was using the 4th
option: adding modules from the Visualize menu, which works fine. This
looks like a bug in mayavi2, because other options work fine.
I will forward this upstream, thanks.

-Varun



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Bug#677421: mayavi2: segfaults as soon as a module is loaded

[Varun Hiremath]

Hi Francesco,

On Wed, Jun 13, 2012 at 4:23 PM, Francesco Poli (wintermute)
invernom...@paranoici.org wrote:
 I reproduced this bug with any data set I tried to visualize, hence
 the package is currently unusable.

 Steps to reproduce:

I had been traveling so didn't get time to investigate this until now.
However, I am unable to reproduce this segfault on my system (with
same versions of packages that you have). I can load both Streamline
and IsoSurface modules and visualize the data. Could you please try
again to reproduce this bug?

Thanks,
Varun



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Bug#677421: mayavi2: segfaults as soon as a module is loaded

[Varun Hiremath]

Hi Francesco,

On Sun, Jul 1, 2012 at 4:56 PM, Francesco Poli
invernom...@paranoici.org wrote:
 I've just reproduced it again, unfortunately.

 Maybe the issue is triggered by something unrelated to the packages
 mayavi2 depends on...
 For instance, it could be video-hardware-specific: the boxes I tested
 mayavi2 on have Intel integrated graphics
 (xserver-xorg-video-intel/2:2.19.0-4).
 Do you have the same type of video card?

I earlier tested on a system with NVidia card (running with Vesa), and
just now tried on a laptop with intel graphics (running
xserver-xorg-video-intel/2:2.19.0-4). I don't get any segfault and the
modules load fine. Do I need to something extra after loading the
modules? I see the streamlines and the iso-surface; I can send you
screenshots if you want.

Thanks,
Varun

Installed packages:

ii  ipython  0.9.1-3
ii  libc62.13-21
ii  libjs-jquery 1.7-1
ii  python   2.7.2-9
ii  python-apptools  4.0.0-1
ii  python-configobj 4.5.2-2
ii  python-envisage  4.0.0-1
ii  python-numpy 1:1.6.2-1
ii  python-pkg-resources 0.6.16-1
ii  python-traits4.1.0-1
ii  python-traitsui  4.1.0-1
ii  python-vtk   5.8.0-13
ii  python-wxgtk2.8  2.8.12.1-11
ii  python2.72.7.3-1



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Bug#677421: mayavi2: segfaults as soon as a module is loaded

[Varun Hiremath]

Hi Francesco,

On Wed, Jun 13, 2012 at 4:23 PM, Francesco Poli (wintermute)
invernom...@paranoici.org wrote:
 I reproduced this bug with any data set I tried to visualize, hence
 the package is currently unusable.

 Steps to reproduce:

I had been traveling so didn't get time to investigate this until now.
However, I am unable to reproduce this segfault on my system (with
same versions of packages that you have). I can load both Streamline
and IsoSurface modules and visualize the data. Could you please try
again to reproduce this bug?

Thanks,
Varun



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Bug#677421: mayavi2: segfaults as soon as a module is loaded

[Varun Hiremath]

Hi Francesco,

On Sun, Jul 1, 2012 at 4:56 PM, Francesco Poli
invernom...@paranoici.org wrote:
 I've just reproduced it again, unfortunately.

 Maybe the issue is triggered by something unrelated to the packages
 mayavi2 depends on...
 For instance, it could be video-hardware-specific: the boxes I tested
 mayavi2 on have Intel integrated graphics
 (xserver-xorg-video-intel/2:2.19.0-4).
 Do you have the same type of video card?

I earlier tested on a system with NVidia card (running with Vesa), and
just now tried on a laptop with intel graphics (running
xserver-xorg-video-intel/2:2.19.0-4). I don't get any segfault and the
modules load fine. Do I need to something extra after loading the
modules? I see the streamlines and the iso-surface; I can send you
screenshots if you want.

Thanks,
Varun

Installed packages:

ii  ipython  0.9.1-3
ii  libc62.13-21
ii  libjs-jquery 1.7-1
ii  python   2.7.2-9
ii  python-apptools  4.0.0-1
ii  python-configobj 4.5.2-2
ii  python-envisage  4.0.0-1
ii  python-numpy 1:1.6.2-1
ii  python-pkg-resources 0.6.16-1
ii  python-traits4.1.0-1
ii  python-traitsui  4.1.0-1
ii  python-vtk   5.8.0-13
ii  python-wxgtk2.8  2.8.12.1-11
ii  python2.72.7.3-1



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Bug#677421: mayavi2 segfault on debian

[Varun Hiremath]

Hi,

Could you please take a look at this bug report:
http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=677421

Do you think this a bug in wx or vtk, or has this anything to do with
mayavi2? Let me know so I can reassign the bug to the correct package.

Thanks,
Varun



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Bug#677421: mayavi2 segfault on debian

[Varun Hiremath]

Hi,

Could you please take a look at this bug report:
http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=677421

Do you think this a bug in wx or vtk, or has this anything to do with
mayavi2? Let me know so I can reassign the bug to the correct package.

Thanks,
Varun



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Bug#678046: RM: pdfedit -- ROM; depends on Qt3 libraries

[Varun Hiremath]

Package: ftp.debian.org


Severity: normal





Hi,





pdfedit depends on QT3 libraries (#604576) and upstream is not yet ready to


port to QT4: http://pdfedit.petricek.net/bt/view.php?id=318





Thus, I request the removal of pdfedit package from Debian. I will reupload
the

package when upstream finishes porting pdfedit to QT4.





Thanks,


Varun

Bug#604576: RM: pdfedit -- ROM; depends on Qt3 libraries

[Varun Hiremath]

Package: ftp.debian.org


Severity: normal





Hi,





pdfedit depends on QT3 libraries (#604576) and upstream is not yet ready to


port to QT4: http://pdfedit.petricek.net/bt/view.php?id=318





Thus, I request the removal of pdfedit package from Debian. I will reupload
the

package when upstream finishes porting pdfedit to QT4.





Thanks,


Varun

Bug#604575: Preparations for the removal of the KDE3 and Qt3 libraries

[Varun Hiremath]

Ana,

On Sun, May 27, 2012 at 2:15 PM, Ana Guerrero a...@debian.org wrote:

 On Sat, May 19, 2012 at 10:59:51AM +0200, Ana Guerrero wrote:
  Hello maintainer(s),
 
  One year and a half later, it is about time to remove Qt3.
  Please, migrate to the Qt4 version (if existing) or file for removal of
 your
  package.
 

 Looking at http://extcalc-linux.sourceforge.net/ there is newer upstream
 version. Could you please update it or if you are not interested in extcalc
 anymore, I will do an orphaning upload with the  new version.


I don't have time anymore to maintain extcalc, so please go ahead with
orphaning the package.

Thanks,
Varun

Accepted pdfedit 0.4.5-3 (source amd64)

[Varun Hiremath]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Tue, 08 May 2012 12:53:08 -0400
Source: pdfedit
Binary: pdfedit
Architecture: source amd64
Version: 0.4.5-3
Distribution: unstable
Urgency: low
Maintainer: Varun Hiremath va...@debian.org
Changed-By: Varun Hiremath va...@debian.org
Description: 
 pdfedit- Editor for manipulating PDF documents
Closes: 667320
Changes: 
 pdfedit (0.4.5-3) unstable; urgency=low
 .
   * Add patches/pdfedit-ftbfs-fix.diff to fix FTBFS with gcc-4.7, thanks
 to Willi Mann wi...@wm1.at for the patch (Closes: #667320)
   * Bump Standards-Version to 3.9.3
Checksums-Sha1: 
 bdc8250dc029513cd627c8180b260e19187637ea 1906 pdfedit_0.4.5-3.dsc
 6cec6124f9dc916626462b0804d00c1df786e444 6501 pdfedit_0.4.5-3.debian.tar.gz
 f75098e29a56e5ce96c5b730bbc67fc9002af7c1 2135868 pdfedit_0.4.5-3_amd64.deb
Checksums-Sha256: 
 c8158319b501315dbda59af7f230842f3ba4533f959724735f80a2bef87d0b7b 1906 
pdfedit_0.4.5-3.dsc
 981d18099a4b4352c9072ffa85888045b0ef4312dc56b6cf7e406f0e59b30dec 6501 
pdfedit_0.4.5-3.debian.tar.gz
 209ddc7878b07bc3b87f41506f6f0b62193b91b800b6948a6c26b715e966d022 2135868 
pdfedit_0.4.5-3_amd64.deb
Files: 
 1725b5400a2261c8b29927225cf43d47 1906 utils optional pdfedit_0.4.5-3.dsc
 080a581783465557fee1d847c81d6c66 6501 utils optional 
pdfedit_0.4.5-3.debian.tar.gz
 e7712670ec18fa05b3edf914422b71c0 2135868 utils optional 
pdfedit_0.4.5-3_amd64.deb

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Accepted:
pdfedit_0.4.5-3.debian.tar.gz
  to main/p/pdfedit/pdfedit_0.4.5-3.debian.tar.gz
pdfedit_0.4.5-3.dsc
  to main/p/pdfedit/pdfedit_0.4.5-3.dsc
pdfedit_0.4.5-3_amd64.deb
  to main/p/pdfedit/pdfedit_0.4.5-3_amd64.deb


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Accepted stalonetray 0.8.1-1 (source amd64)

[Varun Hiremath]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Sat, 05 May 2012 18:00:11 -0400
Source: stalonetray
Binary: stalonetray
Architecture: source amd64
Version: 0.8.1-1
Distribution: unstable
Urgency: low
Maintainer: Roman Dubtsov busa...@users.sourceforge.net
Changed-By: Varun Hiremath va...@debian.org
Description: 
 stalonetray - Standalone freedesktop.org and KDE systray implementation
Changes: 
 stalonetray (0.8.1-1) unstable; urgency=low
 .
   * Acknowledge NMU, thanks Steve McIntyre
   * New upstream release
   * Use source format 3.0 (quilt)
Checksums-Sha1: 
 b447f304292821fd4b198460e283397ccce9fe0c 1948 stalonetray_0.8.1-1.dsc
 80a137a80a469354f59dd6c228834d72db82777a 195544 stalonetray_0.8.1.orig.tar.gz
 9025f873ac8e6027b90f6b5744681518a4ca8b87 3597 stalonetray_0.8.1-1.debian.tar.gz
 0ad57086d34fccd2a5f57ee4e2430872ddca131e 86622 stalonetray_0.8.1-1_amd64.deb
Checksums-Sha256: 
 fb11460518a83f13c1333de2dc34a6583f0e4c1e720ed35447c10aebfc236d9b 1948 
stalonetray_0.8.1-1.dsc
 b59b77cf002974e70efd38275002111ae586e3c0b51628860672b256e3561b72 195544 
stalonetray_0.8.1.orig.tar.gz
 5ffa20356bc5ae93588516355d9a83159748fbacf8f0f4d91abc3b252f5a31a4 3597 
stalonetray_0.8.1-1.debian.tar.gz
 9f121e57b2d837f7ad2a7a27ce932eb5846a3939147a279aaae57e1fec362ce6 86622 
stalonetray_0.8.1-1_amd64.deb
Files: 
 5f1aabbcc6a5075f6801a0422d3080d5 1948 x11 optional stalonetray_0.8.1-1.dsc
 0f7c8b51535ce3ae1054d21f2a6082fa 195544 x11 optional 
stalonetray_0.8.1.orig.tar.gz
 c1cb55fe99fac2de138904b01aabe93d 3597 x11 optional 
stalonetray_0.8.1-1.debian.tar.gz
 4c44a13dc49af9434dc236259faf7eff 86622 x11 optional 
stalonetray_0.8.1-1_amd64.deb

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=UnP+
-END PGP SIGNATURE-


Accepted:
stalonetray_0.8.1-1.debian.tar.gz
  to main/s/stalonetray/stalonetray_0.8.1-1.debian.tar.gz
stalonetray_0.8.1-1.dsc
  to main/s/stalonetray/stalonetray_0.8.1-1.dsc
stalonetray_0.8.1-1_amd64.deb
  to main/s/stalonetray/stalonetray_0.8.1-1_amd64.deb
stalonetray_0.8.1.orig.tar.gz
  to main/s/stalonetray/stalonetray_0.8.1.orig.tar.gz


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