Hi Vincent,
sorry I only realized now that the error was below the deprecate message:
org.Hs.egCHRLOC is deprecated as the data is better accessed from
another location. Please use an appropriate TxDb object or package for
this kind of data.
LaTeX errors:
!pdfTeX error: /usr/bin/pdflatex
- Original Message -
From: Tom Hardcastle tj...@cam.ac.uk
To: Dan Tenenbaum dtene...@fhcrc.org
Cc: bioc-devel@r-project.org
Sent: Tuesday, September 23, 2014 5:57:38 AM
Subject: Re: [Bioc-devel] Changing the name of a package
Hi Dan,
This seems to have changed the name of the
Sean, thanks for confirming that it works. /Henrik
On Tue, Sep 23, 2014 at 4:23 AM, Sean Davis sdav...@mail.nih.gov wrote:
Hi, Henrik.
This is the approach that I have been using, also, roughly summarized as:
- git svn clone from bioconductor svn (can take a LONG time, so use git svn
clone
Hi Jim,
On 09/23/2014 09:42 AM, James W. MacDonald wrote:
There is an issue on the support site having to do with the inability to
import the summary function from the namespaces from the packages listed in
the subject line. I see the same problem/errors with my affycoretools
package.
When you
Hi Herve,
No joy:
biocLite(ReportingTools)
BioC_mirror: http://bioconductor.org
Using Bioconductor version 2.14 (BiocInstaller 1.14.2), R version
3.1.0.
Installing package(s) 'ReportingTools'
trying URL '
http://bioconductor.org/packages/2.14/bioc/src/contrib/ReportingTools_2.4.0.tar.gz
'
Never mind. Installing all of GOstats, Category, AnnotationDbi and
ReportingTools fixed the issue.
Thanks,
Jim
On Tue, Sep 23, 2014 at 1:55 PM, James W. MacDonald jmac...@uw.edu wrote:
Hi Herve,
No joy:
biocLite(ReportingTools)
BioC_mirror: http://bioconductor.org
Using Bioconductor
Hi Vince,
You raise an important point that a common use of the chipDb objects
will become overly complicated with this change. Especially since chip
platforms should really have an implicit genome that they were designed
for from the get go. And since annotations packages are being build
Hi Vincent,
I have further investigated the error I have in the vignette of chimera
devel package .
It is related to the libraries used to access to org.Hs.eg.db in the
devel branch.
In the presence of the following libraries (stable branch):
[1] org.Hs.eg.db_2.14.0 RSQLite_0.11.4
Hi,
Martin and I looked into this a bit. It looks like a problem with
handling an 'undefined error' returned from a worker (i.e., job did not
run). When there is a problem executing the tmpl script no error message
is sent back. The NULL is coerced to simpleError and becomes a problem
Hi Raffaele,
This problem should be resolved in devel at this time. Please update to
the latest version of AnnotationDbi (1.27.14) and try again.
Marc
On 09/23/2014 02:36 PM, calogero UNITO wrote:
affaeleaffaeleHi Vincent,
I have further investigated the error I have in the vignette of
10 matches
Mail list logo
