Re: [Bioc-devel] mcols Function Not Found for Windows Build

2018-03-15 Thread Hervé Pagès
Hi Dario, You're missing several imports. The CHECK results on the other platforms contains "no visible global function definition" notes for several symbols including 'mcols': https://bioconductor.org/checkResults/3.7/bioc-LATEST/ClassifyR/malbec2-checksrc.html Not sure why these missing

[Bioc-devel] mcols Function Not Found for Windows Build

2018-03-15 Thread Dario Strbenac
Good day, I notice an error happening when the vignette of ClassifyR is checked by tokay2. mcols is not found. I viewed the check reports of S4Vectors, and there are some Warnings for all operating systems, but no platform has Error, so it's unlikely to be related to the problem. Is there a

Re: [Bioc-devel] Best practice on commit

2018-03-15 Thread Hervé Pagès
Hi, Just to clarify, all software packages are built and checked every night, independently of whether their version got bumped or not. The version bump only allows the modified package to propagate to the public repo and become available via biocLite(), possibly replacing the previous version

Re: [Bioc-devel] Best practice on commit

2018-03-15 Thread Tyler Smith
On Sun, Mar 11, 2018, at 4:10 AM, Egon Willighagen wrote: > But previously I learned that when you push > something to the repository, you should bump the question, so currently I > do this for every change I made, leaving a ridiculous number of minor > release and really short NEWS entries... I

[Bioc-devel] updating experiment data package MethylAidData

2018-03-15 Thread Davy Cats
Dear all, We are looking to update the MethylAidData experiment data package by adding an additional dataset. We are not sure what the appropriate steps towards this are. Can we just update the package and push to the bioconductor git with a version bump (like with a software package)? Or is