>From a very quick look at this, I think you also need to explicitly
install the package itself for it to be available in external R
session (contrary to when using forked processing as on Linux and
macOS). Something like this:
- name: Install dependencies
run: |
Hi bioconductor team,
we are currently developing a package for future submission on
bioconductor which you can find here
https://github.com/calabrialab/ISAnalytics.
We use Github actions to keep track of R cmd checks at every commit, and
this time, surprisingly for us, we had a failure on
hi,
it looks like either VariantAnnotation::readVcf() or something in the
CollapsedVCF class broke in devel with respect to reading and setting
sequence styles:
library(VariantAnnotation)
fl <- system.file("extdata", "chr22.vcf.gz", package="VariantAnnotation")
vcf <- readVcf(fl, "hg19")
Could you try closing the issue and reopening a new issue. But before opening
could you please changing the name of the repository.
Your github repository location is
HPAStainR_package
But the package DESCRIPTION names the package is HPAStainR.
The repository and DESCRIPTION Package name
