Re: [Bioc-devel] S4 Methods Documentation Convention Triggers Warnings

2022-11-30 Thread Henrik Bengtsson
> I think in \item{}{bar} the is not wrapped, so runs off the margin > in the devel ‘Constructor’ section. Would a hack be to split up the \code{} in multiple ones, e.g. \item{ \code{SnowParam(workers = snowWorkers(), type=c("SOCK", "MPI"),} \code{tasks = 0L, stop.on.error =

Re: [Bioc-devel] S4 Methods Documentation Convention Triggers Warnings

2022-11-30 Thread Martin Morgan
I recently made the change Henrik suggests in the �devel� but not �release� branch of BiocParallel, so the manuals can be compared. Take a look at the �Constructor� and �Accessors: Logging and results� sections of the �SnowParam-class.Rd� man page, starting on p. 53 of the PDF.

[Bioc-devel] error on BiocGenerics:::testPackage

2022-11-30 Thread Zhigang Li
Dear Bioconductor Developers, Can you please help with an error message from BiocGenerics:::testPackage for the package IFAA? The BioConductor platform produced the following error message when running BiocGenerics:::testPackage("IFAA"): " BiocGenerics:::testPackage("IFAA") Error in

Re: [Bioc-devel] S4 Methods Documentation Convention Triggers Warnings

2022-11-30 Thread Martin Maechler
> Michael Lawrence \(MICHAFLA\) via Bioc-devel > on Mon, 28 Nov 2022 12:11:00 -0800 writes: > It may be worth revisiting why we arrived at this convention in the first > place and see whether the Rd system can be enhanced somehow so that we can > achieve the same effect