Re: [Bioc-devel] Urgent minor deployment of a release?

2023-06-19 Thread Henrik Bengtsson
On Mon, Jun 19, 2023 at 5:46 PM Vincent Carey wrote: > > Hi Adam, thanks for your note. > > Changes to release branch sources must be limited to bug fixes or doc > improvement. Any new features > must be introduced only in the devel branch. I know about this, but I wanted to find what the

[Bioc-devel] rfaRm package

2023-06-19 Thread Selles Vidal, Lara
Dear all, My rfaRm package has been giving TIMEOUT in the build results on all plaforms recently. I have been tried to debug the issue, but I am unable to reproduce the problem locally. The build report only seems to indicate that it times out while building vignettes

Re: [Bioc-devel] Urgent minor deployment of a release?

2023-06-19 Thread Robert M. Flight
I'd also add, that I've had a version of a package that specifically implemented things just for a manuscript, because they were kind of hackish implementations to prove that it was possible. I made that available in a specific branch of the package code on GitHub, and an archived version on

Re: [Bioc-devel] Urgent minor deployment of a release?

2023-06-19 Thread Neumann, Steffen
... And as a reviewer I'd never have an issue if a paper describes something and mentions in which Version (x.y.z) it is released, regardless in what BioC release/devel that is. Yours, Steffen On Mon, 2023-06-19 at 11:46 -0400, Vincent Carey wrote: > Hi Adam, thanks for your note. > > Changes

Re: [Bioc-devel] Urgent minor deployment of a release?

2023-06-19 Thread Vincent Carey
Hi Adam, thanks for your note. Changes to release branch sources must be limited to bug fixes or doc improvement. Any new features must be introduced only in the devel branch. Any features to be removed must be indicated as deprecated for one release and then labeled as defunct. See

[Bioc-devel] Urgent minor deployment of a release?

2023-06-19 Thread Park, Adam Keebum
Hi all, I wonder if there is any room for deploying a modification to a released library(retrofit, 3.17), which was released last month. We are in a progress of a paper review, so the release schedule (twice each year) does not perfectly fit our need. Or do you think we should have used

Re: [Bioc-devel] Bioconductor Website Redesign - We Need Your Input

2023-06-19 Thread Maria . Doyle
Quick update on our Bioconductor redesign survey. We�ve mapped responses by country here and noticed some regions are underrepresented. If you or your network are from these areas, we encourage you to participate or share the survey. Survey only takes a few minutes