Not if its justified but I'd be sure to mark the man pages as internal (if
using roxygen you can do @keywords internal) . Normally that is referring to
any exported function. I assume adequate testing, or examples in exported
functions are run?
Lori Shepherd - Kern
Bioconductor Core Team
I am in the process of refining an R package for submission to Bioconductor. My
package has several non-exported functions that include usage examples wrapped
in "dontrun". I do this because these are functions are only called within a
parent function and require complex and esoteric inputs. It
exomePeak2 was never deprecated.
You can push to the devel branch to also fix the package in devel and then it
will be available
https://bioconductor.org/checkResults/devel/bioc-LATEST/exomePeak2/
Lori Shepherd - Kern
Bioconductor Core Team
Roswell Park Comprehensive Cancer Center
