Re: [Bioc-devel] issue to open a file from UCSC

If you're not directly accessing this URL, but through GenomeInfoDb as an upstream dependency, this has been recently fixed a couple of days ago: https://github.com/Bioconductor/GenomeInfoDb/commit/77f3c97cb78607a169b24ab1f827453e04cdd6a0 and the updated version 1.39.6 of GenomeInfoDb should

Re: [Bioc-devel] Project Application Reactivation request.

I will reopen the issue for you to continue. Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 From: Bioc-devel on behalf of Ali

Re: [Bioc-devel] Omada package failing due to removed dependency

Hi Sokratis, You can view the commit history of your package in the Bioconductor repository by visiting https://code.bioconductor.org/browse/omada/commits/devel You can select the different branches from the drop down in the top left corner. It looks like you successfully pushed to the devel

[Bioc-devel] Package submission- external dependancy

Dear core team, I would like to submit my package trackplot to Bioconductor. However, it depends on an external command line tool (bwtool) that needs to be installed and located under the path. Would this dependancy make the package eligible for