Re: [Bioc-devel] Best practice on commit

2018-03-15 Thread Tyler Smith
On Sun, Mar 11, 2018, at 4:10 AM, Egon Willighagen wrote: > But previously I learned that when you push > something to the repository, you should bump the question, so currently I > do this for every change I made, leaving a ridiculous number of minor > release and really short NEWS entries... I

Re: [Bioc-devel] pushing from github to bioconductor, skipping local machine

2017-12-04 Thread Tyler Smith
On Mon, Dec 4, 2017, at 12:55 PM, Turaga, Nitesh wrote: > Hi Tyler, > > AFAIK, this is not possible. You need a local repository with valid > credentials on that local machine to be able to push to the bioconductor > server. Too bad! I thought that since I had to upload my ssh public key to

[Bioc-devel] pushing from github to bioconductor, skipping local machine

2017-12-04 Thread Tyler Smith
Hi, I think I have set up proper access to the Bioconductor git repos, and cloned the repos into a separate github repository. Bioconductor has my ssh key, and I've also added this key to GitHub. The only hitch in my development workflow is that my work network blocks the SSH/git port, so I

Re: [Bioc-devel] Recommendations for Shiny app on Bioconductor

2017-03-29 Thread Tyler Smith
On Wed, Mar 29, 2017, at 11:23 AM, Martin Morgan wrote: > On 03/29/2017 09:32 AM, Vladimir Kiselev wrote: > > Hi Wellinton, > > > > As far as I know if you wrap you shiny stuff into an R function that should > > be enough. Then you can provide both non-interactive and interactive > > functions and

Re: [Bioc-devel] release schedule

2017-03-16 Thread Tyler Smith
ng up. We usually release a day or two > after R does so we don't set a date until R has announced theirs. As > soon as we know the R schedule we'll make an announcement on bioc-devel > and the support site. I'll also post the new release schedule. > > Valerie > > On 03/16/20

[Bioc-devel] release schedule

2017-03-16 Thread Tyler Smith
Hi, Is there a deadline for for updates to packages for the next release yet? The webpage hasn't been updated since October (http://bioconductor.org/developers/release-schedule/), but I think there is another release in April? Best, Tyler -- plantarum.ca

[Bioc-devel] Build failure for new package

2016-10-14 Thread Tyler Smith
Hi, My flowPloidy package has been accepted into the devel branch, and I've now received a warning about a build failure: http://master.bioconductor.org/checkResults/3.4/bioc-LATEST/flowPloidy/malbec1-buildsrc.html The error indicates that the flowPloidy vignette failed to compile, because the

Re: [Bioc-devel] Bioconductor 3.4 release schedule

2016-10-07 Thread Tyler Smith
On Wed, Oct 5, 2016, at 06:31 PM, Martin Morgan wrote: > > If your package is added to the repository after the release, then it is > added to the 'devel' branch and any changes are introduced there for > availability at the next release. > > Any user can opt for the 'devel' branch > > Once a

Re: [Bioc-devel] Bioconductor 3.4 release schedule

2016-10-05 Thread Tyler Smith
Hello, I submitted a new package after the deadline, so I understand it won't be available to users until the next release in 6 months (assuming it's acceptable). I'm not clear on what happens once a package is accepted into Bioconductor. At that point, if I make changes, are they visible to

Re: [Bioc-devel] SSL connect error on package build machine

2016-09-27 Thread Tyler Smith
650 > > Dan > > > - Original Message - > > From: "Tyler Smith" <ty...@plantarum.ca> > > To: "bioc-devel" <bioc-devel@r-project.org> > > Sent: Tuesday, September 27, 2016 2:05:08 PM > > Subject: [Bioc-devel] SSL connect error on package

[Bioc-devel] SSL connect error on package build machine

2016-09-27 Thread Tyler Smith
Hi, I've just submitted a new package. The automated build generated an error which I think (?) is a problem on one of the build servers (SSL connect error in querying the bioc-devel list). I'm not sure if I'm far enough along in the process for my assigned human to be alerted to this, or if