Re: [Bioc-devel] "Reviving" an existing workflow

2018-06-08 Thread Bernd Klaus
something that will have to be remedied. > > >  > > > I also would git rm the vignette/MA-Workflow.html  - this should > be > > > generated automatically from the Rmd file and including a version > > > could result it a stale copy.  > > >  > > > Jus

Re: [Bioc-devel] "Reviving" an existing workflow

2018-06-05 Thread Shepherd, Lori
53:41 AM To: Shepherd, Lori; bioc-devel Cc: Stefanie Reisenauer Subject: Re: [Bioc-devel] "Reviving" an existing workflow Hello Lori, following up on this, we have now finished the revision of the workflow and are ready to submit it to Bioc: https://github.com/Steffireise/maEndToEnd How

Re: [Bioc-devel] "Reviving" an existing workflow

2018-06-05 Thread Bernd Klaus
seems like you set.seed > > in > > the vignette but that code is not exposed to the user - assuming > > this > > would be important to show so that a user could reproduce your > > work.   > > > > We look forward to getting this workflow active again and on

Re: [Bioc-devel] "Reviving" an existing workflow

2018-05-03 Thread Bernd Klaus
work.   > > We look forward to getting this workflow active again and on the > builder.  > > Cheers,  > > Lori Shepherd > Bioconductor Core Team > Roswell Park Cancer Institute > Department of Biostatistics & Bioinformatics > Elm & Carlton Streets > Buff

Re: [Bioc-devel] "Reviving" an existing workflow

2018-05-03 Thread Shepherd, Lori
atistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Bernd Klaus <bernd.kl...@embl.de> Sent: Thursday, May 3, 2018 3:03:20 AM To: bioc-devel Subject: [Bioc-devel] &q

[Bioc-devel] "Reviving" an existing workflow

2018-05-03 Thread Bernd Klaus
Dear Bioc Team, I submitted a Microarray workflow some time ago (using SVN / Jenkins) to Bioconductor, but I never published it at the (now retired) workflow page.   Upon a recent request by the Bioc Team, I changed into a package, which is now at: packages/maEndToEnd on the Bioconductor git