On 02/20/2018 01:25 PM, Gabe Becker wrote:
Herve,
Thanks for the response. The looping across a ranges that's still in
tehre is:
dss = switch(seqtype,
bp = DNAStringSet(*lapply(ranges(srcs)*,
function(x) origin[x])),
aa =
Herve,
Thanks for the response. The looping across a ranges that's still in tehre
is:
dss = switch(seqtype,
bp = DNAStringSet(*lapply(ranges(srcs)*, function(x)
origin[x])),
aa = AAStringSet(*lapply(ranges(srcs),* function(x)
origin[x])),
Hi Gabe,
I made a couple of changes to genbankr (1.7.2) to avoid those looping
e.g. I replaced things like
sapply(gr, width)
with
width(gr)
I can't run a full 'R CMD build' + 'R CMD check' on the package though
because the code in the vignette seems to fail for reasons unrelated
to
All,
I'm trying to track down the new failure in my genbankr package and it
appears to come down to the fact that i'm trying to lapply over an
IRanges, which fails in the IRanges to list (or List?) conversion. The
particular case that fails in my example is an IRanges of length 1 but that
does
