Re: [Bioc-devel] gwaswloc class broken

I think this is settled by running updateObject(ebicat37) with a current GenomicRanges etc. I will do this and reserialize. On Tue, Feb 20, 2018 at 8:01 AM, Robert Castelo wrote: > thanks Vince for your quick response, indeed your intuition is right, > coercing to

Re: [Bioc-devel] gwaswloc class broken

thanks Vince for your quick response, indeed your intuition is right, coercing to 'GRanges' avoids the problem, i'm cc'ing bioc-devel so that people involved in 'GRanges' know about this: library(gwascat) data(ebicat37) ebicat37[1] Error in updateObject(x, check = FALSE) : no slot of name

[Bioc-devel] gwaswloc class broken

hi, the 'gwasloc' class from the gwascat package seems to be broken in devel, i suspect due to recent changes in the 'GRanges' class or some other class upstream, because the definition of the 'gwasloc' class in gwascat/R/classes.R is: setClass("gwaswloc",