Re: [Bioc-devel] vignette problems

2018-04-10 Thread campos
ull request addressing issues. Martin > > On 04/09/2018 08:42 AM, campos wrote: >> Dear devel team, >> >> I am still puzzled with the problems with mac compiling. I am really >> lost and have no idea how to continue or how to be able to check >> about this

Re: [Bioc-devel] vignette problems

2018-04-10 Thread campos
Hi Martin, it seems like mac is ok now. What has changed?? Thank you very much, Rafael On 10.04.2018 11:33, Martin Morgan wrote: On 04/10/2018 05:27 AM, campos wrote: Hi Martin, Thank you very much, I am a bit concerned about the option of: Last Changed Date: 2018-04-05 09:37:37 -0400

Re: [Bioc-devel] vignette problems

2018-04-05 Thread campos
, int, int*)’: HMM.cpp:112:15: warning: unused variable ‘j’ [-Wunused-variable] int i,j,t,k;    ^ It really pays to clean these up; most are harmless, but they obscure the more important warnings. Martin On 04/03/2018 09:58 AM, campos wrote: Hi Martin, when I

Re: [Bioc-devel] vignette problems

2018-04-05 Thread campos
stitute > > Department of Biostatistics & Bioinformatics > > Elm & Carlton Streets > > Buffalo, New York 14263 > > > *From:* Bioc-devel <bioc-devel-boun...@r-project.org> on behalf

Re: [Bioc-devel] vignette problems

2018-04-11 Thread campos
to 2.6.1. Unfortunately, I pushed the changes after tonight's builds started, so the effect of the changes will not be reported until Thursday mid-morning, Eastern time, if the build system does not have problems. Martin On 04/10/2018 02:14 PM, campos wrote: Hi Martin, it seems like mac is ok n

Re: [Bioc-devel] vignette problems

2018-04-11 Thread campos
(fetch) origin    g...@git.bioconductor.org:packages/STAN (push) Thanks a lot, Rafa On 11.04.2018 16:43, Martin Morgan wrote: On 04/11/2018 09:58 AM, campos wrote: Hi Martin, thank you very much for your time and effort! I pulled the branch to my computer updated the DESCRIPTION file

Re: [Bioc-devel] vignette problems

2018-04-11 Thread campos
again Martin, you have been of great help. Best, Rafael On 11.04.2018 16:52, Martin Morgan wrote: On 04/11/2018 10:47 AM, campos wrote: Hi Martin, when I run git status I get this: On branch master Your branch is up-to-date with 'origin/master'. nothing to commit, working directory clean

Re: [Bioc-devel] vignette problems

2018-04-09 Thread campos
stitute > > Department of Biostatistics & Bioinformatics > > Elm & Carlton Streets > > Buffalo, New York 14263 > > > *From:* Bioc-devel <bioc-devel-boun...@r-project.org> on behalf

Re: [Bioc-devel] vignette problems

2018-04-21 Thread campos
that be a possible warning to be ignored? Thank you very much again, Rafael On 11.04.2018 16:52, Martin Morgan wrote: On 04/11/2018 10:47 AM, campos wrote: Hi Martin, when I run git status I get this: On branch master Your branch is up-to-date with 'origin/master'. nothing to commit, working

Re: [Bioc-devel] vignette problems

2018-04-24 Thread campos
:52, Martin Morgan wrote: On 04/11/2018 10:47 AM, campos wrote: Hi Martin, when I run git status I get this: On branch master Your branch is up-to-date with 'origin/master'. nothing to commit, working directory clean shouldn't I see that my version in my machine is some commits behind?   $git

Re: [Bioc-devel] vignette problems

2018-04-24 Thread campos
it updated on Bioconductor. Once I can contact the developer maybe I can work in nicer code. So, you think will pass the checks? so far I have not gotten any warnings with your method. Best, Rafa On 24.04.2018 16:03, Martin Morgan wrote: On 04/24/2018 09:42 AM, campos wrote: Hi Martin

Re: [Bioc-devel] vignette problems

2018-03-29 Thread campos
col) #' ... Can you please commit a version of the package that installs? Martin On 03/27/2018 06:42 PM, campos wrote: Dear bioc-devel team, I am developing the STAN packages and I am running into problems when trying to build my package. The problem is the following: Error in vignette_type(Outf

[Bioc-devel] Fwd: geneplast.data version number issue

2023-08-22 Thread Leonardo Campos
Maybe I've sent it to the wrong email. Forwarding here. -- Forwarded message - From: Leonardo Campos Date: Fri, Aug 18, 2023 at 8:41 PM Subject: geneplast.data version number issue To: CoreTeam Bioconductor Dear Bioconductor team, I have noticed that my annotation package

[Bioc-devel] cliqueMS request for undeprecation as all errors have been fixed

2024-04-25 Thread Oriol Senan Campos
Dear Bioconductor Core Team, I am the maintainer of cliqueMS. The package was flagged to deprecation but I have been able to fix the error that was causing the failure in the checks. I just had to remove a dependency that is no longer on CRAN and replace for a package available there. After