Hello everyone!!
I am working on tertiary Structure prediction of RNA molecule. I have
generated approx 20k structure through the Rosetta denovo method. I didn't
get any method for selecting the accurate or near - native structure.
Kindly help me out.
I have use an ARES tool which is used for
HI Armando,
The “Ensemblator” (available on Github at
https://github.com/Karplus-Lab-OSU/ensemblator ) is a program we published back
in 2017 that aligns structures and clusters them.
Furthermore, the main purpose of the program and what I think is most unique
about it, is that given two sets
Thank you all.
What about the analysis? Does any program cluster the structures according to
their structural similarity?
Armando
> El 6 mar 2023, a las 15:58, Harry Powell
> <193323b1e616-dmarc-requ...@jiscmail.ac.uk> escribió:
>
> Hi Eleanor
>
> According to
>
>
Hi Eleanor
According to
https://www.ccp4.ac.uk/html/gesamt.html
"Gesamt aligns two or more structures…”
and
https://www.ccp4.ac.uk/html/superpose.html
"superpose aligns and superposes two or more protein structures…”
But the real expert is probably Eugene.
Harry
> On 6
Does Superpose or GESAMT align multiple structures?
And can either read the NMR format and apply alignment to MODEL 1 ; MODE:L
2 etc?
Eleanor
On Mon, 6 Mar 2023 at 14:53, Harry Powell <
193323b1e616-dmarc-requ...@jiscmail.ac.uk> wrote:
> Or you could use Gesamt - also in CCP4.
>
> Harry
>
>
Or you could use Gesamt - also in CCP4.
Harry
> On 6 Mar 2023, at 13:15, Kay Diederichs
> wrote:
>
> Dear Armando,
>
> besides THESEUS, you could use SUPERPOSE (in CCP4) or USalign
> (https://zhanggroup.org/US-align/).
> In my tests, THESEUS sometimes crashed in different ways. USalign is
Dear Armando,
besides THESEUS, you could use SUPERPOSE (in CCP4) or USalign
(https://zhanggroup.org/US-align/).
In my tests, THESEUS sometimes crashed in different ways. USalign is very
robust; SUPERPOSE is fast.
HTH,
Kay
On Mon, 6 Mar 2023 08:35:20 +0100, Armando Albert wrote:
>Dear all,
