[ccp4bb] PDB, mmCIF, chain ID

2023-06-09 Thread Harry Powell
Hi folks I’ve noticed that for some structures, the PDB file seems to have the mmCIF entry for the “_atom_site.label_asym_id” as the chain ID, and for other PDB files it has the “_atom_site.label_entity_id”. e.g. for 4bpq, for ATOM 1 I see - > CIF: ATOM 1N N . UNK A 1 1 ? 14.187

[ccp4bb] PhD position in Structural Biology

2023-06-09 Thread gruszczyk
Dear colleagues, Our team at The Structural Biology Centre in Montpellier has an opening for a highly motivated PhD student. The 3-year position is funded jointly by The Region Occitania and Inserm. The prospective PhD student will be involved in the structural and biochemical

[ccp4bb] wwPDB NEWS: DNS name changes for PDB archive downloads from wwPDB to start September 2023

2023-06-09 Thread Deborah Harrus
Dear all, In 2022, wwPDB introduced DNS names for programmatic access to PDB archive downloads:  * FTP: ftp://ftp.wwpdb.org  * HTTPS: https://files.wwpdb.org (replaces https://ftp.wwpdb.org)  * RSYNC: rsync://rsync.wwpdb.org

[ccp4bb] PhD opportunity in membrane protein structural biology

2023-06-09 Thread Schertler Gebhard
Dear colleagues, we have a PhD student position open for investigating light-sensitive GPCRs from invertebrate or non-visual vertebrate rhodopsins by modern structural biology methodology including X-ray crystallography and cryo-EM. The position is funded by the ERC synergia grant SOL