Re: [ccp4bb] anomalous map in Coot - Linux vs. Win difference?

2023-08-02 Thread Paul Emsley
On 02/08/2023 13:53, Andrea Smith wrote: Dear all, I used refmac in CCP4Cloud and then I opened the generated .pdb and .mtz from the CCP4Cloud job both in Linux Coot 0.9.6. and WinCoot 0.9.6. I can see different anomalous maps in Coot and Wincoot - see attached printscreen where on the left

Re: [ccp4bb] anomalous map in Coot - Linux vs. Win difference?

2023-08-02 Thread Randy John Read
I’ve just been playing with a difference map to check something. If you fail to set the map as a difference map (either when opening the map initially, or using Calculate->Map Tools->Set map is a difference map), there’s nothing in the Display Manager->Properties window that tells you. I was

Re: [ccp4bb] anomalous map in Coot - Linux vs. Win difference?

2023-08-02 Thread Jon Cooper
It looks like it is not applying the 90 degree phase shift for anomalous data. Best wishes, Jon Cooper. jon.b.coo...@protonmail.com Sent from Proton Mail mobile Original Message On 2 Aug 2023, 14:32, Andrea Smith wrote: > Dear Eleanor, > > yes, I made the printscreen with the

Re: [ccp4bb] anomalous map in Coot - Linux vs. Win difference?

2023-08-02 Thread Eleanor Dodson
Hmmm -are the two ano maps contoured at the same level? You can check this by setting the SCROLL option to the ano map. The 2mFo-DFc maps look pretty identical..which suggests the two input mtz files are similar. You can get more information by viewing the inputs to make sure the values are the