Bug#1071573: Status of libnet-ssl-expiredate-perl

Hi Mason, On 2024-05-27 13:11, Mason James wrote: sorry for my late reply and no objections from me! Now worries, I finished the package and uploaded today. Best, Andrius

Bug#1059706: epics-base.pc is still broken

Hi, On Sat, 4 May 2024 22:53:36 +0900 Kentaro HAYASHI wrote: I've attached PoC patches which are based on https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1059706#33 Before: $ pkg-config --cflags epics-base -I/build/reproducible-path/epics-base-7.0.8+dfsg1/include

Bug#1071573: Status of libnet-ssl-expiredate-perl

Control: owner -1 ! Hello, It is quite important to me to get libnet-ssl-expiredate-perl done ASAP. Thus if you do not have any objections, I am going to finalize it. Andrius

Bug#1071655: pytorch: FTBFS on ppc64el

Source: pytorch Version: 2.1.2+dfsg-4 Severity: serious Tags: ftbfs Hello, pytorch FTBFS on ppc64el: FAILED: caffe2/CMakeFiles/torch_cpu.dir/__/aten/src/ATen/native/Col2Im.cpp.o /usr/bin/c++ -DAT_PER_OPERATOR_HEADERS -DCAFFE2_BUILD_MAIN_LIB -DFMT_HEADER_ONLY=1 -DHAVE_MALLOC_USABLE_SIZE=1

Bug#1071573: ITP: libnet-ssl-expiredate-perl -- obtain expiration date of certificate

Package: wnpp Owner: Mason James Severity: wishlist Control: block 1036769 by -1 X-Debbugs-CC: m...@kohaaloha.com * Package name: libnet-ssl-expiredate-perl Version : 1.24 Upstream Author : Hirose Masaaki * URL : https://metacpan.org/release/Net-SSL-ExpireDate *

Bug#1070770: lintian: check for testing presence of "nodocs" in DEB_BUILD_OPTIONS

On 2024-05-19 15:48, Julian Gilbey wrote: But here I'd suggest doing the opposite: checking for valid build options (and note: this is a check for DEB_BUILD_OPTIONS, not for DEB_BUILD_PROFILES). There is a very short list of standard build options: those listed in dpkg-buildpackage(1)

Bug#1035833: cpptraj: autopkgtest failure everywhere except on amd64

Control: severity -1 important Control: retitle -1 cpptraj: FTBFS on \!amd64 On Wed, 10 May 2023 02:29:08 +0530 Kiran S Kunjumon wrote: You package cpptraj has an autopkgtest, great. However, it fails everywhere except on amd64. Can you please investigate the situation and fix it? I have

Bug#1071207: ITP: r-cran-calculus -- High Dimensional Numerical and Symbolic Calculus

Package: wnpp Owner: Andrius Merkys Severity: wishlist * Package name: r-cran-calculus Version : 1.0.1 Upstream Author : Emanuele Guidotti * URL : https://cran.r-project.org/package=calculus * License : GPL-3 Programming Lang: GNU R Description

Bug#1071176: ITP: python-htmltools -- Tools for creating, manipulating, and writing HTML

Package: wnpp Owner: Andrius Merkys Severity: wishlist * Package name: python-htmltools Version : 0.5.1 Upstream Author : Posit Software, PBC * URL : https://github.com/rstudio/py-htmltools * License : Expat Programming Lang: Python Description

Bug#1071089: RM: cpptraj [arm64 armel armhf i386 mips64el ppc64el riscv64 s390x] -- ROM; FTBFS on non-amd64 archs

Package: ftp.debian.org Severity: normal Hello, Please remove cpptraj binaries for the following architectures: arm64 armel armhf i386 mips64el ppc64el riscv64 s390x It FTBFS on non-amd64 architectures as noticed in #1035833. Andrius

Bug#1035833: cpptraj: autopkgtest failure everywhere except on amd64

On Wed, 10 May 2023 02:29:08 +0530 Kiran S Kunjumon wrote: === FAILURES === TEST: /tmp/autopkgtest-lxc.kz5vbtvg/downtmp/build.qgE/src/test/Test_SPAM CPPTRAJ: SPAM Test ../MasterTest.sh: line 495: 3218 Killed

Bug#1036769: lintian: Check for certificates .pem/.crt/.pkcs12 with expiry set

Control: owner -1 ! Hi, On Thu, 25 May 2023 17:27:48 +0200 Florian Lohoff wrote: i am in the middle of a stretch rebuild for mipsel (Upgrade path from jessie as stretch dropped 75% of supported systems with mips32) A big issue are certificates, mostly for build tests which have an expire

Bug#1070275: RM: macromoleculebuilder [armhf] -- ROM; unsupported on 32bit archs

Package: ftp.debian.org Severity: normal Hello, Please remove macromoleculebuilder binaries for armhf. The upstream has confirmed the package is no longer supported on 32bit architectures. Andrius

Bug#1068925: 1068925: macromoleculebuilder should be limited to 64bit

Control: owner -1 ! Hello, Upstream has confirmed that macromoleculebuilder should be limited to 64bit. I am going to limit the architectures and file for RM on armhf soon. Andrius

Bug#956194: streamlit status

Hello, Is anybody still interested in streamlit? Some time ago I packaged its dependency node-xxhashjs and ended up maintaining it. I do not use node-xxhashjs myself and would like to pass its maintenance to people interested in streamlit. Andrius

Bug#1064311: rdkit: NMU diff for 64-bit time_t transition

Hi, On Wed, 24 Apr 2024 23:57:17 +0200 Chris Hofstaedtler wrote:> An upload with t64 binaries is required as soon as possible. Given the packages have to go to binary-NEW, you must upload with binaries, and then probably follow up with a source-only upload once they are ACCEPTed. t64

Bug#1065660: antlr4-maven-plugin: please provide debian-versioned maven coordinates

Control: severity -1 important Control: tags -1 - ftbfs Hi, On 2024-04-25 19:12, Santiago Vila wrote: I noticed that chemicaltagger currently FTBFS and I believe it is because of this problem, so to avoid duplicate reports, I'm raising this one to serious. A build log for chemicaltagger is

Bug#1065660: antlr4-maven-plugin: please provide debian-versioned maven coordinates

Hi, On 2024-04-25 19:12, Santiago Vila wrote: I noticed that chemicaltagger currently FTBFS and I believe it is because of this problem, so to avoid duplicate reports, I'm raising this one to serious. A build log for chemicaltagger is available here:

Bug#1069873: rdkit: FTBFS convert: Unable to read font (/usr/share/fonts/type1/gsfonts/n019003l.pfb).

Source: rdkit Version: 202309.3-3 Severity: serious Tags: ftbfs sid Hello, rdkit FTBFS with the following error in latexpdf documentation build: Extension error: convert exited with error: [stderr] b'convert: Unable to read font (/usr/share/fonts/type1/gsfonts/n019003l.pfb).\n' [stdout] b''

Bug#1064311: rdkit: NMU diff for 64-bit time_t transition

Hi Chris, On 2024-04-25 00:57, Chris Hofstaedtler wrote: t64 is already in unstable and making its way to testing. So you are a bit late with getting rdkit fixed for t64. An upload with t64 binaries is required as soon as possible. Given the packages have to go to binary-NEW, you must upload

Bug#1063124: libccp4: NMU diff for 64-bit time_t transition

Hi, On Mon, 05 Feb 2024 07:52:37 + Steve Langasek wrote: If you have any concerns about this patch, please reach out ASAP. Although this package will be uploaded to experimental immediately, there will be a period of several days before we begin uploads to unstable; so if information

Bug#1064311: rdkit: NMU diff for 64-bit time_t transition

Hi, On Mon, 19 Feb 2024 21:35:16 + Steve Langasek wrote:> Since turning on 64-bit time_t is being handled centrally through a change to the default dpkg-buildflags (https://bugs.debian.org/1037136), it is important that libraries affected by this ABI change all be uploaded close together

Bug#1068578: RFH: singularity-container -- container platform focused on supporting "Mobility of Compute"

Hi Nilesh, On 2024-04-10 19:53, Nilesh Patra wrote: On Mon, Apr 08, 2024 at 08:59:26AM +0300, Andrius Merkys wrote: On 2024-04-07 15:28, Nilesh Patra wrote: Assistance required with maintaining the singularity-container package. I am not offering help with singularity-container, but do you

Bug#1068942: unblock 1068942 by 1069098

control: unblock 1068942 by 1069098 Hello, emboss no longer builds on s390x and its binaries have been RMed from s390x, unblocking emboss migration to testing. This in principle should resolve the current bug. Andrius

Bug#1069226: tomogui: FTBFS: RuntimeError: Sphinx is required to build or test the documentation

Source: tomogui Version: 0.3.1-2 Severity: serious Tags: ftbfs Hello, tomogui FTBFS in sid on amd64: running build_doc Traceback (most recent call last): File "/home/merkys/tomogui-0.3.1/setup.py", line 804, in setup_package() File "/home/merkys/tomogui-0.3.1/setup.py", line 801, in

Bug#1069225: freesas: FTBFS: fatal error: numpy/arrayobject.h: No such file or directory

Source: freesas Version: 0.9.0-6 Severity: serious Tags: ftbfs Hello, freesas FTBFS in sid on amd64: INFO:root:x86_64-linux-gnu-gcc -Wsign-compare -fwrapv -O2 -Wall -Werror=implicit-function-declaration -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security

Bug#1069224: nabu: FTBFS: AssertionError: OpenclUnsharpMask: max error is too high with method

Source: nabu Version: 2023.1.1-3 Severity: serious Tags: ftbfs Hello, nabu FTBFS in sid on amd64: FAILURES

Bug#1069170: RM: emboss [s390x] -- ROM; FTBFS

control: tags -1 - moreinfo On Wed, 17 Apr 2024 14:03:10 +0300 Andrius Merkys wrote:> Please remove emboss binaries for s390x because of #1069098. I have not yet filed RM requests for all the reverse dependencies, therefore I tag this with moreinfo, to be removed once I am done. RM b

Bug#1069174: RM: embassy-domsearch [s390x] -- ROM; Build-Depends missing on s390x

Package: ftp.debian.org Severity: normal Control: block 1069170 by -1 Hello, Please remove embassy-domsearch binaries for s390x, as emboss-lib is no longer built there due to #1069098. Andrius

Bug#1069173: RM: embassy-domalign [s390x] -- ROM; Build-Depends missing on s390x

Package: ftp.debian.org Severity: normal Control: block 1069170 by -1 Hello, Please remove embassy-domalign binaries for s390x, as emboss-lib is no longer built there due to #1069098. Andrius

Bug#1069172: RM: embassy-domainatrix [s390x] -- ROM; Build-Depends missing on s390x

Package: ftp.debian.org Severity: normal Control: block 1069170 by -1 Hello, Please remove embassy-domainatrix binaries for s390x, as emboss-lib is no longer built there due to #1069098. Andrius

Bug#1069170: RM: emboss [s390x] -- ROM; FTBFS

Package: ftp.debian.org Severity: normal Tags: moreinfo Hello, Please remove emboss binaries for s390x because of #1069098. I have not yet filed RM requests for all the reverse dependencies, therefore I tag this with moreinfo, to be removed once I am done. Andrius

Bug#1069142: emboss: build time testsuite is failing silently

Hi Charles, On Wed, 17 Apr 2024 09:30:03 +0300 Andrius Merkys wrote: While looking into why #1069098 has not been detected earlier, I noticed that emboss build time testsuite is silently failing since at least 6.4.0-3. This needs fixing in order to avoid problems similar to #1069098. I

Bug#1069142: emboss: build time testsuite is failing silently

Source: emboss Version: 6.4.0-3 Severity: important Owner: Andrius Merkys Hello, While looking into why #1069098 has not been detected earlier, I noticed that emboss build time testsuite is silently failing since at least 6.4.0-3. This needs fixing in order to avoid problems similar

Bug#1069098: emboss: all executables segfault on s390x

Hi Andreas, On 2024-04-17 08:32, Andreas Tille wrote: I'd recommend following the procedure you supposed in https://lists.debian.org/debian-med/2024/04/msg00034.html Someone needs to file removal requests for s390x for the rdepends from emboss, thought. Thanks, this is what I am going to

Bug#1069098: emboss: all executables segfault on s390x

Package: emboss Version: 6.6.0+dfsg-9 Severity: important Tags: bullseye bookworm trixie sid X-Debbugs-CC: debian-...@lists.debian.org Hello, All emboss executables segfault on s390x since bullseye. Segfault is evident when calling any of emboss executables without CLI arguments or only with

Bug#1068925: [Debichem-devel] Bug#1068925: macromoleculebuilder: FTBFS on armhf (error: inconsistent deduction for auto return type: 'long int' and then 'long long int')

control: forwarded -1 https://simtk.org/tracker/?func=detail_id=359=827=3289 Hi, On 2024-04-13 16:52, Kentaro HAYASHI via Debichem-devel wrote: Dear Maintainer, macromoleculebuilder fails to build on armhf. FYI:

Bug#1068708: Building with EPICS fails because the compiler cannot find `compilerSpecific.h`.

Hi Florian, On 2024-04-10 16:40, Florian Forster wrote: pkg-config references paths (/build/reproducible-path/…) that likely exist on the build system, but are not provided by the package: ``` # pkg-config epics-base --cflags | sed -e 's/  */\n/g'

Bug#1059706: epics-base.pc is still broken

control: reopen -1 control: found -1 7.0.8+dfsg1-1 Hello, As epics-base.pc still contains incorrect paths, I am reopening this bug. Andrius

Bug#1068708: Building with EPICS fails because the compiler cannot find `compilerSpecific.h`.

Hi Florian, On 2024-04-09 16:38, Florian Forster wrote: Building with EPICS fails because the compiler cannot find `compilerSpecific.h`: ``` In file included from /usr/include/epics/epicsThread.h:62, from /usr/include/epics/cadef.h:35, from src/epics.c:26:

Bug#1068692: RFP: python-pycddl -- Deserialize CBOR and/or do CDDL schema validation

Package: wnpp Severity: wishlist X-Debbugs-CC: pkg-rust-maintain...@lists.alioth.debian.org * Package name: python-pycddl Version : 0.6.1 Upstream Author : Systema Development LLC * URL : https://gitlab.com/tahoe-lafs/pycddl * License : Expat Programming

Bug#1068626: libdwarf-dev: please provide CMake files

Package: libdwarf-dev Version: 20210528-1 Hello, dwarfutils seem to contain CMake files needed to find libdwarf using CMake's find_library(). However, these files do not seem to be installed into the libdwarf-dev binary package. It might be because the package is currently built using

Bug#1068578: RFH: singularity-container -- container platform focused on supporting "Mobility of Compute"

Hi Nilesh, On 2024-04-07 15:28, Nilesh Patra wrote: Assistance required with maintaining the singularity-container package. I am not offering help with singularity-container, but do you by any chance know why apptainer is not packaged for Debian? I cannot find a wnpp bug. Thanks for

Bug#1068381: closed by Debian FTP Masters (reply to Andrius Merkys ) (Bug#1068381: fixed in openapi-specification 3.1.0-2)

On 2024-04-04 15:41, Julian Gilbey wrote: Wow, that was fast - thank you! You are welcome - hope that helps! Best wishes, Andrius

Bug#1068294: RFH: liboqs -- library for quantum-safe cryptographic algorithms

Package: wnpp Severity: normal In the light of recent calls to increase the quality and the bus factor of security-related packages, I request assistance with maintaining the liboqs package. I do not have enough time nor expertise to properly maintain liboqs alone. The package is sid-only

Bug#1066450: opensearch: FTBFS with lucene9/9.10.0+dfsg

control: retitle -1 opensearch: FTBFS with lucene9/9.10.0+dfsg I have recently updated lucene9. Current FTBFS is caused by missing lucene9 classes. Thus it seems that lucene9 API has changed breaking backwards compatibility. Andrius

Bug#1003512: closed by Debian FTP Masters (reply to Patrick Winnertz ) (Bug#1003512: fixed in cherrytree 1.1.0+dfsg-1)

Hi Patrick, On 2024-03-28 17:09, Debian Bug Tracking System wrote: This is an automatic notification regarding your Bug report which was filed against the wnpp package: #1003512: RFA: cherrytree -- hierarchical note taking application It has been closed by Debian FTP Masters (reply to

Bug#943315: ITP: vst3sdk -- professional audio plugin development kit

Hello, I had some luck in packaging vst3sdk. I pushed my packaging attempts (just the debian/ directory) to my personal repository on salsa [1]. The package builds and installs VST3 plugins, debian/copyright is as well almost finished. I had some difficulties in constructing the multiple

Bug#1066296: RE: Bug#1066296: xli: FTBFS: dither.c:77:36: error: implicit declaration of function ‘strlen’ [-Werror=implicit-function-declaration]

Hi Nilson, On Wed, 13 Mar 2024 17:34:15 + Nilson Silva wrote: Relevant part (hopefully): > cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O

Bug#1067212: ITP: libgraph-grammar-perl -- Grammar for graphs

Package: wnpp Owner: Andrius Merkys Severity: wishlist * Package name: libgraph-grammar-perl Version : 0.1.0 Upstream Author : Andrius Merkys * URL : https://metacpan.org/release/Graph-Grammar * License : BSD-3-Clause Programming Lang: Perl Description

Bug#964773: 964773: inchi to become free software again

Hello, An update: the upcoming inchi release is going to be licensed under Expat [1]. Thus an opportunity may appear to build rdkit with inchi support. [1] https://github.com/IUPAC-InChI/InChI/issues/8 Andrius

Bug#1065660: antlr4-maven-plugin: please provide debian-versioned maven coordinates

Package: antlr4-maven-plugin Version: 4.9.2-2 Control: affects -1 src:chemicaltagger Hello, antlr4-maven-plugin provides maven coordinates carrying package version only: /usr/share/maven-repo/org/antlr/antlr4-maven-plugin/4.9.2/antlr4-maven-plugin-4.9.2.jar

Bug#1064953: [Debichem-devel] Bug#1064953: rdkit: Please provide cmake files

Hi Gürkan, On 2024-02-28 10:17, Gürkan Myczko wrote: thanks for the rdkit packaging would it be possible to also ship rdkit-config.cmake rdkit-config-version.cmake rdkit-targets.cmake rdkit-targets-none.cmake in /usr/lib/cmake/rdkit/ (needed for coot packaging)? I can give it a look. I tried

Bug#1061765: Help needed to fix python-coverage-test-runner

Hi Andreas, On 2024-02-23 09:15, Andreas Tille wrote: I've attempted to fix python-coverage-test-runner in Git since this package is finally responsible for the failure of vmdb2: File "/usr/lib/python3/dist-packages/CoverageTestRunner.py", line 22, in import imp ModuleNotFoundError: No

Bug#1063880: ITP: tmpwatch -- tmpwatch is a utility searches for files not accessed in a specific time and deletes them

Hi, On 2024-02-14 00:21, Peter Hyman wrote: Description : tmpwatch is a utility searches for files not accessed in a specific time and deletes them I fail to parse the short description as a sentence. Maybe: s/utility searches/utility which searches/ Best, Andrius

Bug#1041027: rapidjson FTBFS with googletest 1.13.0

On Thu, 8 Feb 2024 10:22:10 +0200 Andrius Merkys wrote: I attach a patch which fixes the issue by setting -std=c++14 (as needed by googletest) and commenting out a code line in include/rapidjson/document.h which is gone in the newest upstream commit [1]. [1] https://github.com/Tencent

Bug#1041027: rapidjson FTBFS with googletest 1.13.0

control: tags -1 + patch On Fri, 14 Jul 2023 11:03:55 +0300 Adrian Bunk wrote: Source: rapidjson Version: 1.1.0+dfsg2-7.1 Severity: serious Tags: ftbfs trixie sid https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/rapidjson.html ... In file included from

Bug#1061814: [Debichem-devel] Bug#1061814: Bug#1061814: add patch

On 2024-02-07 10:59, Matthias Klose wrote: the package in experimental still has the dependency on python3-distutils. Right, I have just removed it in salsa.d.o. Best, Andrius

Bug#1061814: [Debichem-devel] Bug#1061814: add patch

Hi, On 2024-02-07 07:29, Matthias Klose wrote: this is fixed upstream, and in experimental. however you also have to drop the dependency on python3-distutils. patch at http://launchpadlibrarian.net/713215440/openmm_8.0.0+dfsg-6build1_8.0.0+dfsg-6ubuntu1.diff.gz Thanks for a patch. I have

Bug#1061357: python3-spglib: spglib python package not identified by dh_python3

Hi, On 2024-01-23 01:18, Drew Parsons wrote: But I notice that python3-spglib doesn't provide the .dist-info directory that most other python packages provide. I guess dh-python is using the dist-info mechanism to identify packages. Perhaps we should file a bug against dh-python for it to run

Bug#1062666: transition: openmm

Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: transition Hello, I would like to request a transition slot for openmm (experimental -> unstable) due to soname bump. Current ben tracker [1] is OK. All reverse dependencies rebuild fine, except

Bug#1058454: [Debichem-devel] Bug#1058454: Do we really need to support 32bit in abinit and prody (maybe others)

Hi Andreas, On 2024-01-31 13:08, Andreas Tille wrote: in connection with the time_t transition in Debian Med we are discussing[1] whether we really need 32 bit support for some of our tools or whether we should realistically drop this support to concentrate on problems which are more relevant

Bug#1062398: sympa: lacks dependency on perl-doc

Package: sympa Version: 6.2.70~dfsg-2 Dear Maintainers, Please consider adding dependency on perl-doc for sympa. When called 'sympa help' or just 'sympa', instead of readable manual 'sympa' shows plain Perl code with a warning that perl-doc is needed to show it in more human-readable form.

Bug#1061814: [Debichem-devel] Bug#1061814: openmm fails its autopkg tests with Python 3.12

Hi, On 2024-01-29 21:59, Matthias Klose wrote: Package: src:openmm Version: 8.0.0+dfsg-6 Severity: important Tags: sid trixie ftbfs User: debian-pyt...@lists.debian.org Usertags: python3.12 With python3-defaults from experimental, the package fails its autopkg tests: [...] openmm was built

Bug#1042858: promod3: unable to install on arm64

Hi, On Tue, 1 Aug 2023 23:23:39 +0200 Sebastian Ramacher wrote: $ apt-get install promod3 Reading package lists... Building dependency tree... Reading state information... Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using

Bug#1061479: mk-origtargz: support lz compression

Package: devscripts Version: 2.23.7 Severity: wishlist Dear Maintainers, I am maintaining ocrad package which recently has switched to shipping its tarballs compressed with lz (ocrad-0.29.tar.lz). 'tar.lz' files are identified by 'file' as 'application/x-lzip' and seamlessly extracted by

Bug#1061263: spglib: buildsystem could be switched to scikit-build-core

Hi, On 2024-01-23 09:32, Andrius Merkys wrote: I think both #1061263 and #1061357 could be solved by switching spglib's buildsystem to one based on scikit-build-core, as its pyproject.toml supports that. I made an attempt to build spglib with scikit-build-core by specifying '--buildsystem

Bug#1054409: redmine-plugin-redhopper: redmine stops working after installing this plugin

Control: tags -1 + confirmed Hi, On Tue, 24 Oct 2023 09:57:08 +0300 Andrius Merkys wrote: Thank you for reporting this, it seems to be a rather serious issue. I will give it a closer look once I get to setting up a VM with bookworm. I have successfully reproduced the issue on fresh install

Bug#1061263: spglib: buildsystem could be switched to scikit-build-core

Hi, I think both #1061263 and #1061357 could be solved by switching spglib's buildsystem to one based on scikit-build-core, as its pyproject.toml supports that. Andrius

Bug#1061263: python3-spglib: fails with python3.12 (extension not built)

Hi Drew, On 2024-01-21 19:32, Drew Parsons wrote: Package: python3-spglib Version: 2.2.0-2 Severity: normal python3-spglib fails with python3.12, since the python extension is built only for python3.11. Yes, for the time being, spglib builds for default Python only. spglib should be

Bug#1056457: python-ase's autopkg tests fail with Python 3.12

Hi Graham, On Mon, 8 Jan 2024 08:46:45 +0200 Graham Inggs wrote: However, since spglib stopped building its extension for all supported Python versions (see #1057858) testing python-ase against Python 3.12 now fails with: 531s INTERNALERROR> Traceback (most recent call last): 531s

Bug#1058127: python-mpiplus: FTBFS: AttributeError: module 'configparser' has no attribute 'SafeConfigParser'. Did you mean: 'RawConfigParser'?

Hi Yogeswaran, On 2024-01-16 03:43, Yogeswaran Umasankar wrote: I have removed the hard-coded version number from setup.py. I found that the issue was due to changes in PEP440 version naming convention in versioneer. For this package no need python3-versioneer, upstream has its own

Bug#1058127: python-mpiplus: FTBFS: AttributeError: module 'configparser' has no attribute 'SafeConfigParser'. Did you mean: 'RawConfigParser'?

Hi Yogeswaran, On 2024-01-14 18:46, Yogeswaran Umasankar wrote: I created a patch for fixing AttributeError: module 'configparser' has no attribute 'SafeConfigParser'. In the process I have updated it to the latest upstream too. I’ve attached the debdiff for you to check out. I noticed you

Bug#1054974: behave: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.11 returned exit code 13

Hi, On 2024-01-15 17:34, Christoph Berg wrote: Re: Andrius Merkys The patch proposed in #1042610 does not fix test failure. Interestingly, the failure seems to be nondeterministic: after patching #1042610 some builds succeed. However, I did not manage to find the root cause. The difference

Bug#1059998: Update liboqs to mitigate KyberSlash - potential to leak secrets

Hi, On 2024-01-04 16:18, Kartik Kulkarni wrote: The latest release [0.9.1](https://github.com/open-quantum-safe/liboqs/releases/tag/0.9.1 ) has merged the fixes for a potential division timing attack found in kyber reference

Bug#1054974: behave: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.11 returned exit code 13

Hi, On Tue, 12 Dec 2023 19:35:09 +0100 s3v wrote: please see https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1042610 for a proposed patch. The patch proposed in #1042610 does not fix test failure. Interestingly, the failure seems to be nondeterministic: after patching #1042610 some

Bug#1042610: #1042610: patch works

Control: tags -1 + patch Hello, I can confirm that the provided patch (+B-D on python3-doc) fixes the bug. However, #1054974 is not fixed, thus behave still FTBFS. Andrius

Bug#1057644: multiple python versions in a single .deb package

Hi, On 2024-01-01 06:21, Mo Zhou wrote: I tried this and it turns to be a little bit complicated to support. The code change can be found in the git history, which was reverted by me. The problem is that the file libtorch_python.so.* is specific to one python version, and cannot be shared

Bug#1059706: epics-base.pc is broken in epics-dev package

Control: tags -1 + confirmed Hi, On 2023-12-30 18:06, Matwey V. Kornilov wrote: Package: epics-dev Version: 7.0.7+dfsg1-5 Please note, that epics-base.pc file is installed into /usr/share/pkg-config instead of /usr/share/pkgconfig and cannot be found. I have just fixed this in the packaging

Bug#1059175: dials: FTBFS: Imported target "DXTBX::DXTBX" includes non-existent path

Control: tags -1 + patch pending Hi, On 2023-12-21 00:42, Sebastian Ramacher wrote: Source: dials Version: 3.12.1+dfsg3-5 Severity: serious Tags: ftbfs Justification: fails to build from source (but built successfully in the past) X-Debbugs-Cc: sramac...@debian.org

Bug#1056457: [Debichem-devel] Bug#1056457: python-ase's autopkg tests fail with Python 3.12

Control: tags -1 + patch Hi, On 2023-12-20 20:23, s3v wrote: After applying [1][2][3] from upstream and adding "-p no:warnings":   addopts = -p no:cacheprovider -p no:warnings in ase/test/pytest.ini (DeprecationWarnings from various packages make tests fail), I was able to build your

Bug#1010653: needs-internet restriction (Was: Bug#1010653: closed ...) (Bug#1010653: fixed in busco 5.5.0-2)

Hi Andreas, On 2023-12-20 12:37, Andreas Tille wrote: Hi Andrius, Am Wed, Dec 20, 2023 at 08:27:31AM +0200 schrieb Andrius Merkys: On 2023-12-19 18:51, Debian Bug Tracking System wrote: [ Komolehin Israel Timilehin ] * Added autopkgtest to check hmmer and prodigal integration

Bug#1010653: closed by Debian FTP Masters (reply to Komolehin Israel Timilehin ) (Bug#1010653: fixed in busco 5.5.0-2)

Hi, On 2023-12-19 18:51, Debian Bug Tracking System wrote: [ Komolehin Israel Timilehin ] * Added autopkgtest to check hmmer and prodigal integration (Closes: #1010653) Thanks for working on this. I see that the added autopkgtest uses network to download the dataset. It is done

Bug#1058868: [Debichem-devel] Bug#1058868: gemmi: Please build shared library

Hi, On 2023-12-17 11:31, Yadd wrote: currently src:gemmi builds gemmi and gemmi-dev. This doesn't permit to build any software using gemmi-dev without static linking. The proposed patch adds package libgemmi1 which contains the shared library. I looked into the shared library provided by

Bug#1058868: [Debichem-devel] Bug#1058868: gemmi: Please build shared library

Control: owner -1 ! Control: tags -1 - moreinfo Hi, On 2023-12-18 09:47, Yadd wrote: yas I'm going to package ovito which depends on it. If shared library isn't provided, cmake automatically uses libgemmi_cpp.a which then embed gemmi into ovito  I see. OK, let me apply your patch and build

Bug#1058868: [Debichem-devel] Bug#1058868: gemmi: Please build shared library

Control: tags -1 + moreinfo Hi Yadd, On 2023-12-17 11:31, Yadd wrote: Source: gemmi Version: 0.6.3+ds-1 Severity: important Tags: patch X-Debbugs-Cc: y...@debian.org Hi, currently src:gemmi builds gemmi and gemmi-dev. This doesn't permit to build any software using gemmi-dev without static

Bug#1058865: ITP: python-pubchempy -- pubchem python rest api chemistry cheminformatics

Hi Yogeswaran, On 2023-12-17 09:57, Yogeswaran Umasankar wrote: * Package name: python-pubchempy Version : 1.0.4 Upstream Contact: Matt Swain * URL :https://github.com/mcs07/PubChemPy * License : Expat Programming Lang: Python Description :

Bug#1058723: python-parsley: run autopkgtest for all supported Python versions

Source: python-parsley Version: 1.3-3 Severity: wishlist Tags: help Hello, python-parsley builds for all supported Python versions. It seems only appropriate to run autopkgtest on all supported Python versions as well. However, currently it is run only on the default version: $ cat

Bug#1058722: scikit-build-core: please remove me from uploaders

Source: scikit-build-core Severity: wishlist Hello, Back in a day I thought scikit-build-core was a new build dependency of a package I maintained, thus I packaged it. Later it turned out that it was not necessary. Thus now I have no interest in scikit-build-core and would prefer to be

Bug#1058690: liblatex-tounicode-perl: trying to overwrite .../ltx2unitxt.1.gz, which is also in package texlive-bibtex-extra 2023.20231207-1

Control: tags -1 + patch Hello, On 2023-12-14 16:07, Vincent Lefevre wrote: Package: liblatex-tounicode-perl Version: 0.54-1 Severity: serious As a consequence of the upgrade of texlive-bibtex-extra to 2023.20231207-3: [...] Selecting previously unselected package liblatex-tounicode-perl.

Bug#1053729: RFP: SAIL image decoding library

Hi Sudip, On 2023-12-13 12:28, Sudip Mukherjee wrote: Hi Andrius, On Wed, Oct 18, 2023 at 08:38:52AM +0300, Andrius Merkys wrote: Hi Dmitry, On 2023-10-17 16:25, Dmitry Baryshev wrote: > Does it produce desired Debian packages? I've just pushed a couple of fixes to the Debian rules.

Bug#1058454: [Debichem-devel] Bug#1058454: prody: autopkgtest regression on i386

Hi, On 2023-12-12 13:48, Graham Inggs wrote: Source: prody Version: 2.3.1+dfsg-3 Severity: serious Tags: sid trixie User: debian...@lists.debian.org Usertags: regression Hi Maintainer The autopkgtest of prody 2.3.1+dfsg-3 is failing when tested with numpy 1:1.24.2-2 [1]. I've copied what I

Bug#1057951: [Debichem-devel] Bug#1057951: promod3: FTBFS: No such file or directory: 'model.pdb'

Control: owner -1 ! Hi, On 2023-12-11 14:04, Santiago Vila wrote: # Also happens in bookworm found 1057951 3.2.1+ds-6 thanks El 11/12/23 a las 12:06, Andrius Merkys escribió: I can reproduce this in clean chroot on barriere.d.o. Interestingly, FTBFS happens only when building on two threads

Bug#1057951: [Debichem-devel] Bug#1057951: promod3: FTBFS: No such file or directory: 'model.pdb'

Control: tags -1 + confirmed Hi, On 2023-12-10 22:51, Santiago Vila wrote: Package: src:promod3 Version: 3.3.1+ds-1 Severity: serious Tags: ftbfs Dear maintainer: During a rebuild of all packages in unstable, your package failed to build:

Bug#1057644: pytorch: build for all supported Python versions

Source: pytorch Severity: wishlist Version: 2.0.1+dfsg-5 Hello, Currently pytorch builds for the default Python version only. This causes build failures for reverse dependencies which build for all supported Python versions, for example python-array-api-compat and pytorch-geometric [1].

Bug#1057028: node-stable: please remove me from uploaders

Source: node-stable Severity: wishlist Hello, Back in a day I packaged/sponsored a bunch of node packages needed by node-shiny-server. I ended up never using shiny-server and/or node-shiny-server, but with the responsibility for its dependencies. Thus I would like to be removed from the

Bug#1057027: node-pause: please remove me from uploaders

Source: node-pause Severity: wishlist Hello, Back in a day I packaged/sponsored a bunch of node packages needed by node-shiny-server. I ended up never using shiny-server and/or node-shiny-server, but with the responsibility for its dependencies. Thus I would like to be removed from the

Bug#1057024: node-client-sessions: please remove me from uploaders

Source: node-client-sessions Severity: wishlist Hello, Back in a day I packaged/sponsored a bunch of node packages needed by node-shiny-server. I ended up never using shiny-server and/or node-shiny-server, but with the responsibility for its dependencies. Thus I would like to be removed from

Bug#1057026: node-morgan: please remove me from uploaders

Source: node-morgan Severity: wishlist Hello, Back in a day I packaged/sponsored a bunch of node packages needed by node-shiny-server. I ended up never using shiny-server and/or node-shiny-server, but with the responsibility for its dependencies. Thus I would like to be removed from the

Bug#1057025: node-ip-address: please remove me from uploaders

Source: node-ip-address Severity: wishlist Hello, Back in a day I packaged/sponsored a bunch of node packages needed by node-shiny-server. I ended up never using shiny-server and/or node-shiny-server, but with the responsibility for its dependencies. Thus I would like to be removed from the

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