Bug#1010110: ncbi-blast+: terminate called after throwing an instance of 'ncbi::CIO_Exception'

Thanks a lot!

Bug#1010110: ncbi-blast+: terminate called after throwing an instance of 'ncbi::CIO_Exception'

Control: tags -1 wontfix Am Sat, Apr 30, 2022 at 09:33:22AM +0200 schrieb patrice.dur...@gmail.com: > > That would be very nice! There is a backport to stable available now. I've tagged the bug wontfix since there is no good way to fix it in official stable but users can read about the issue

Bug#1010110: ncbi-blast+: terminate called after throwing an instance of 'ncbi::CIO_Exception'

That would be very nice! Thanks, Patrice

Bug#1010110: ncbi-blast+: terminate called after throwing an instance of 'ncbi::CIO_Exception'

Am Thu, Apr 28, 2022 at 08:28:11PM +0200 schrieb Patrice Duroux: > Finally I also checked with the x64-linux binary package available here: > https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.11.0/ > > and got the same problem that confirms that this is an upstream > issue with this

Bug#1010110: ncbi-blast+: terminate called after throwing an instance of 'ncbi::CIO_Exception'

Finally I also checked with the x64-linux binary package available here: https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.11.0/ and got the same problem that confirms that this is an upstream issue with this version. A not so stable version for the current Debian stable then. ;-) Thanks!

Bug#1010110: ncbi-blast+: terminate called after throwing an instance of 'ncbi::CIO_Exception'

sorry for the wrapped lines in my previous message: blastn -db "IGH_V_F_CAAT_SIGNAL IGH_V_F_OCTAMER IGH_V_F_N1-REGION IGH_V_F_HEPTANUCLEOTIDE IGH_V_F_L-REGION IGH_V_F_FR1-IMGT IGH_V_F_FR2-IMGT IGH_V_F_D-REGION IGH_V_F_L-PART2 IGH_V_F_L-PART1 IGH_V_F_V-NONAMER IGH_V_F_N2-REGION IGH_V_F_FR4-IMGT

Bug#1010110: ncbi-blast+: terminate called after throwing an instance of 'ncbi::CIO_Exception'

Hi, Sure it is in the following test case isolated from a larger process that was facing the problem: #!/bin/sh ulimit -n 8192 export BLASTDB=databases blastn -db "IGH_V_F_CAAT_SIGNAL IGH_V_F_OCTAMER IGH_V_F_N1-REGION IGH_V_F_HEPTANUCLEOTIDE IGH_V_F_L-REGION IGH_V_F_FR1-IMGT

Bug#1010110: ncbi-blast+: terminate called after throwing an instance of 'ncbi::CIO_Exception'

Patrice DUROUX writes: > Using the same command line with different versions of the package, Can you please give an example of a command line that reproduces the error? Thanks! -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) http://www.mit.edu/~amu/ |

Bug#1010110: ncbi-blast+: terminate called after throwing an instance of 'ncbi::CIO_Exception'

Package: ncbi-blast+ Version: 2.11.0+ds-1 Severity: normal Dear Maintainer, Using the same command line with different versions of the package, here are the results: 2.10.1+ds-1 (using snapshot.d.o) ok 2.11.0+ds-1 (Bullseye) ko (exitcode=134) terminate called after throwing an instance of