Control: tags -1 patch
The attached patch resolves the issue.
Kind Regards,
Bas
--
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diff -Nru prody-2.3.1+dfsg/debian/changelog prody-2.3.1+dfsg/debian/changelog
--- prody-2.3.1+dfsg/debian/changelog 2022-12-06 08:32:42.000000000 +0100
+++ prody-2.3.1+dfsg/debian/changelog 2023-01-11 19:47:52.000000000 +0100
@@ -1,3 +1,11 @@
+prody (2.3.1+dfsg-2.1) UNRELEASED; urgency=medium
+
+ * Non-maintainer upload.
+ * Add patch to fix test failure with Numpy 1.24.
+ (closes: #1027233)
+
+ -- Bas Couwenberg <sebas...@debian.org> Wed, 11 Jan 2023 19:47:52 +0100
+
prody (2.3.1+dfsg-2) unstable; urgency=medium
* python3-prody-tests: add missing Breaks+Replaces: python3-prody (<< 2.3.1)
diff -Nru prody-2.3.1+dfsg/debian/patches/numpy-1.24.patch
prody-2.3.1+dfsg/debian/patches/numpy-1.24.patch
--- prody-2.3.1+dfsg/debian/patches/numpy-1.24.patch 1970-01-01
01:00:00.000000000 +0100
+++ prody-2.3.1+dfsg/debian/patches/numpy-1.24.patch 2023-01-11
19:47:43.000000000 +0100
@@ -0,0 +1,19 @@
+Description: Fix test failure with Numpy 1.24.
+Author: Bas Couwenberg <sebas...@debian.org>
+Bug-Debian: https://bugs.debian.org/1027233
+
+--- a/prody/compounds/pdbligands.py
++++ b/prody/compounds/pdbligands.py
+@@ -158,9 +158,9 @@ def fetchPDBLigand(cci, filename=None):
+ resnums = np.ones(n_atoms, dtype=ATOMIC_FIELDS['charge'].dtype)
+
+ alternate_atomnames = np.zeros(n_atoms, dtype=ATOMIC_FIELDS['name'].dtype)
+- leaving_atom_flags = np.zeros(n_atoms, np.bool)
+- aromatic_flags = np.zeros(n_atoms, np.bool)
+- stereo_configs = np.zeros(n_atoms, np.bool)
++ leaving_atom_flags = np.zeros(n_atoms, bool)
++ aromatic_flags = np.zeros(n_atoms, bool)
++ stereo_configs = np.zeros(n_atoms, bool)
+ ordinals = np.zeros(n_atoms, int)
+
+ name2index = {}
diff -Nru prody-2.3.1+dfsg/debian/patches/series
prody-2.3.1+dfsg/debian/patches/series
--- prody-2.3.1+dfsg/debian/patches/series 2022-12-01 12:35:56.000000000
+0100
+++ prody-2.3.1+dfsg/debian/patches/series 2023-01-11 19:46:50.000000000
+0100
@@ -1,2 +1,3 @@
no-network-access.patch
add-missing-test-files.patch
+numpy-1.24.patch
