Source: pyranges Version: 0.0.111+ds-4 Severity: serious Justification: FTBFS Tags: trixie sid ftbfs User: lu...@debian.org Usertags: ftbfs-20230724 ftbfs-trixie
Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > make[1]: Entering directory '/<<PKGBUILDDIR>>' > dh_auto_build > I: pybuild base:240: /usr/bin/python3 setup.py build > echo 'Generating corresponding files ...' > Generating corresponding files ... > cat debian/missing-sources/test_sorted.sam| samtools view -Sb - > > tests/test_data/test_sorted.bam > cat debian/missing-sources/control.sam| samtools view -Sb - > > pyranges/example_data/control.bam > samtools index tests/test_data/test_sorted.bam > tests/test_data/test_sorted.bam.bai > samtools index pyranges/example_data/control.bam > pyranges/example_data/control.bam.bai > make[1]: Leaving directory '/<<PKGBUILDDIR>>' > dh_auto_test -O--buildsystem=pybuild > I: pybuild pybuild:307: cp -av /<<PKGBUILDDIR>>/tests/*.bed > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/tests && cp -av > /<<PKGBUILDDIR>>/tests/test_data > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/tests && cp -av > /<<PKGBUILDDIR>>/tests/data > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/tests && cp -av > /<<PKGBUILDDIR>>/pyranges/example_data > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/pyranges > '/<<PKGBUILDDIR>>/tests/chip_10.bed' -> > '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/tests/chip_10.bed' > '/<<PKGBUILDDIR>>/tests/f1.bed' -> > '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/tests/f1.bed' > '/<<PKGBUILDDIR>>/tests/f2.bed' -> > '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/tests/f2.bed' > '/<<PKGBUILDDIR>>/tests/test_data' -> > '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/tests/test_data' > '/<<PKGBUILDDIR>>/tests/test_data/ensembl.gtf' -> > '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/tests/test_data/ensembl.gtf' > '/<<PKGBUILDDIR>>/tests/test_data/gencode.gff3' -> > '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/tests/test_data/gencode.gff3' > '/<<PKGBUILDDIR>>/tests/test_data/ucsc_df_to_parse.txt' -> > '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/tests/test_data/ucsc_df_to_parse.txt' > '/<<PKGBUILDDIR>>/tests/test_data/test_sorted.bam' -> > '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/tests/test_data/test_sorted.bam' > '/<<PKGBUILDDIR>>/tests/test_data/test_sorted.bam.bai' -> > '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/tests/test_data/test_sorted.bam.bai' > '/<<PKGBUILDDIR>>/tests/data' -> > '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/tests/data' > '/<<PKGBUILDDIR>>/tests/data/test_data.py' -> > '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/tests/data/test_data.py' > '/<<PKGBUILDDIR>>/pyranges/example_data/exons.bed' -> > '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/pyranges/example_data/exons.bed' > '/<<PKGBUILDDIR>>/pyranges/example_data/ensembl.gtf' -> > '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/pyranges/example_data/ensembl.gtf' > '/<<PKGBUILDDIR>>/pyranges/example_data/ucsc_human.bed.gz' -> > '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/pyranges/example_data/ucsc_human.bed.gz' > '/<<PKGBUILDDIR>>/pyranges/example_data/chipseq_background.bed' -> > '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/pyranges/example_data/chipseq_background.bed' > '/<<PKGBUILDDIR>>/pyranges/example_data/f2.bed' -> > '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/pyranges/example_data/f2.bed' > '/<<PKGBUILDDIR>>/pyranges/example_data/bw.bw' -> > '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/pyranges/example_data/bw.bw' > '/<<PKGBUILDDIR>>/pyranges/example_data/f1.bed' -> > '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/pyranges/example_data/f1.bed' > '/<<PKGBUILDDIR>>/pyranges/example_data/cpg.bed' -> > '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/pyranges/example_data/cpg.bed' > '/<<PKGBUILDDIR>>/pyranges/example_data/lamina.bed' -> > '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/pyranges/example_data/lamina.bed' > '/<<PKGBUILDDIR>>/pyranges/example_data/gencode_human.gtf.gz' -> > '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/pyranges/example_data/gencode_human.gtf.gz' > '/<<PKGBUILDDIR>>/pyranges/example_data/chipseq.bed' -> > '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/pyranges/example_data/chipseq.bed' > '/<<PKGBUILDDIR>>/pyranges/example_data/aorta.bed' -> > '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/pyranges/example_data/aorta.bed' > '/<<PKGBUILDDIR>>/pyranges/example_data/ensembl_human.gtf.gz' -> > '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/pyranges/example_data/ensembl_human.gtf.gz' > '/<<PKGBUILDDIR>>/pyranges/example_data/chromsizes.bed' -> > '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/pyranges/example_data/chromsizes.bed' > '/<<PKGBUILDDIR>>/pyranges/example_data/aorta2.bed' -> > '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/pyranges/example_data/aorta2.bed' > '/<<PKGBUILDDIR>>/pyranges/example_data/control.bam' -> > '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/pyranges/example_data/control.bam' > '/<<PKGBUILDDIR>>/pyranges/example_data/control.bam.bai' -> > '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/pyranges/example_data/control.bam.bai' > I: pybuild base:240: cd > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build; python3.11 -m pytest > -n 8 > ============================= test session starts > ============================== > platform linux -- Python 3.11.4, pytest-7.4.0, pluggy-1.2.0 > rootdir: /<<PKGBUILDDIR>> > plugins: xdist-3.3.1, hypothesis-6.82.0 > created: 8/8 workers > 8 workers [531 items] > > ........................................................................ [ > 13%] > ........................................................................ [ > 27%] > ........................................................................ [ > 40%] > ........................................................................ [ > 54%] > ........................................................................ [ > 67%] > ........................................................................ [ > 81%] > ........................................................................ [ > 94%] > ....................F...... > [100%] > =================================== FAILURES > =================================== > _________________________________ test_getitem > _________________________________ > [gw3] linux -- Python 3.11.4 /usr/bin/python3.11 > > @settings( > > max_examples=max_examples, > deadline=deadline, > suppress_health_check=HealthCheck.all()) > E hypothesis.errors.FailedHealthCheck: Tests run under @given should > return None, but test_getitem returned Empty PyRanges instead. > E See https://hypothesis.readthedocs.io/en/latest/healthchecks.html for > more information about this. If you want to disable just this health check, > add HealthCheck.return_value to the suppress_health_check settings for this > test. > > tests/test_unary.py:290: FailedHealthCheck > ---------------------------------- Hypothesis > ---------------------------------- > You can add @seed(38673206842016826684023353536273025751) to this test or run > pytest with --hypothesis-seed=38673206842016826684023353536273025751 to > reproduce this failure. > =============================== warnings summary > =============================== > tests/conftest.py:83 > > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/tests/conftest.py:83: > DeprecationWarning: invalid escape sequence '\s' > sep="\s+", > > pyranges/__init__.py:18 > pyranges/__init__.py:18 > pyranges/__init__.py:18 > pyranges/__init__.py:18 > pyranges/__init__.py:18 > pyranges/__init__.py:18 > pyranges/__init__.py:18 > pyranges/__init__.py:18 > pyranges/__init__.py:18 > > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/pyranges/__init__.py:18: > DeprecationWarning: pkg_resources is deprecated as an API. See > https://setuptools.pypa.io/en/latest/pkg_resources.html > import pkg_resources > > tests/test_binary.py:118 > tests/test_binary.py:118 > tests/test_binary.py:118 > tests/test_binary.py:118 > tests/test_binary.py:118 > tests/test_binary.py:118 > tests/test_binary.py:118 > tests/test_binary.py:118 > > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/tests/test_binary.py:118: > HypothesisDeprecationWarning: `Healthcheck.all()` is deprecated; use > `list(HealthCheck)` instead. > The `hypothesis codemod` command-line tool can automatically refactor > your code to fix this warning. > suppress_health_check=HealthCheck.all()) > > tests/test_binary.py:139 > tests/test_binary.py:139 > tests/test_binary.py:139 > tests/test_binary.py:139 > tests/test_binary.py:139 > tests/test_binary.py:139 > tests/test_binary.py:139 > tests/test_binary.py:139 > > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/tests/test_binary.py:139: > HypothesisDeprecationWarning: `Healthcheck.all()` is deprecated; use > `list(HealthCheck)` instead. > The `hypothesis codemod` command-line tool can automatically refactor > your code to fix this warning. > suppress_health_check=HealthCheck.all()) > > tests/test_binary.py:160 > tests/test_binary.py:160 > tests/test_binary.py:160 > tests/test_binary.py:160 > tests/test_binary.py:160 > tests/test_binary.py:160 > tests/test_binary.py:160 > tests/test_binary.py:160 > > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/tests/test_binary.py:160: > HypothesisDeprecationWarning: `Healthcheck.all()` is deprecated; use > `list(HealthCheck)` instead. > The `hypothesis codemod` command-line tool can automatically refactor > your code to fix this warning. > suppress_health_check=HealthCheck.all()) > > tests/test_binary.py:187 > tests/test_binary.py:187 > tests/test_binary.py:187 > tests/test_binary.py:187 > tests/test_binary.py:187 > tests/test_binary.py:187 > tests/test_binary.py:187 > tests/test_binary.py:187 > > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/tests/test_binary.py:187: > HypothesisDeprecationWarning: `Healthcheck.all()` is deprecated; use > `list(HealthCheck)` instead. > The `hypothesis codemod` command-line tool can automatically refactor > your code to fix this warning. > suppress_health_check=HealthCheck.all()) > > tests/test_binary.py:212 > tests/test_binary.py:212 > tests/test_binary.py:212 > tests/test_binary.py:212 > tests/test_binary.py:212 > tests/test_binary.py:212 > tests/test_binary.py:212 > tests/test_binary.py:212 > > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/tests/test_binary.py:212: > HypothesisDeprecationWarning: `Healthcheck.all()` is deprecated; use > `list(HealthCheck)` instead. > The `hypothesis codemod` command-line tool can automatically refactor > your code to fix this warning. > suppress_health_check=HealthCheck.all()) > > tests/test_binary.py:291 > tests/test_binary.py:291 > tests/test_binary.py:291 > tests/test_binary.py:291 > tests/test_binary.py:291 > tests/test_binary.py:291 > tests/test_binary.py:291 > tests/test_binary.py:291 > > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/tests/test_binary.py:291: > HypothesisDeprecationWarning: `Healthcheck.all()` is deprecated; use > `list(HealthCheck)` instead. > The `hypothesis codemod` command-line tool can automatically refactor > your code to fix this warning. > suppress_health_check=HealthCheck.all()) > > tests/test_binary.py:329 > tests/test_binary.py:329 > tests/test_binary.py:329 > tests/test_binary.py:329 > tests/test_binary.py:329 > tests/test_binary.py:329 > tests/test_binary.py:329 > tests/test_binary.py:329 > > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/tests/test_binary.py:329: > HypothesisDeprecationWarning: `Healthcheck.all()` is deprecated; use > `list(HealthCheck)` instead. > The `hypothesis codemod` command-line tool can automatically refactor > your code to fix this warning. > suppress_health_check=HealthCheck.all()) > > tests/test_binary.py:368 > tests/test_binary.py:368 > tests/test_binary.py:368 > tests/test_binary.py:368 > tests/test_binary.py:368 > tests/test_binary.py:368 > tests/test_binary.py:368 > tests/test_binary.py:368 > > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/tests/test_binary.py:368: > HypothesisDeprecationWarning: `Healthcheck.all()` is deprecated; use > `list(HealthCheck)` instead. > The `hypothesis codemod` command-line tool can automatically refactor > your code to fix this warning. > suppress_health_check=HealthCheck.all()) > > tests/test_binary.py:392 > tests/test_binary.py:392 > tests/test_binary.py:392 > tests/test_binary.py:392 > tests/test_binary.py:392 > tests/test_binary.py:392 > tests/test_binary.py:392 > tests/test_binary.py:392 > > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/tests/test_binary.py:392: > HypothesisDeprecationWarning: `Healthcheck.all()` is deprecated; use > `list(HealthCheck)` instead. > The `hypothesis codemod` command-line tool can automatically refactor > your code to fix this warning. > suppress_health_check=HealthCheck.all()) > > tests/test_binary.py:426 > tests/test_binary.py:426 > tests/test_binary.py:426 > tests/test_binary.py:426 > tests/test_binary.py:426 > tests/test_binary.py:426 > tests/test_binary.py:426 > tests/test_binary.py:426 > > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/tests/test_binary.py:426: > HypothesisDeprecationWarning: `Healthcheck.all()` is deprecated; use > `list(HealthCheck)` instead. > The `hypothesis codemod` command-line tool can automatically refactor > your code to fix this warning. > suppress_health_check=HealthCheck.all()) > > tests/test_binary.py:516 > tests/test_binary.py:516 > tests/test_binary.py:516 > tests/test_binary.py:516 > tests/test_binary.py:516 > tests/test_binary.py:516 > tests/test_binary.py:516 > tests/test_binary.py:516 > > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/tests/test_binary.py:516: > HypothesisDeprecationWarning: `Healthcheck.all()` is deprecated; use > `list(HealthCheck)` instead. > The `hypothesis codemod` command-line tool can automatically refactor > your code to fix this warning. > suppress_health_check=HealthCheck.all()) > > tests/test_binary.py:579 > tests/test_binary.py:579 > tests/test_binary.py:579 > tests/test_binary.py:579 > tests/test_binary.py:579 > tests/test_binary.py:579 > tests/test_binary.py:579 > tests/test_binary.py:579 > > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/tests/test_binary.py:579: > HypothesisDeprecationWarning: `Healthcheck.all()` is deprecated; use > `list(HealthCheck)` instead. > The `hypothesis codemod` command-line tool can automatically refactor > your code to fix this warning. > suppress_health_check=HealthCheck.all()) > > tests/test_do_not_error.py:46 > tests/test_do_not_error.py:46 > tests/test_do_not_error.py:46 > tests/test_do_not_error.py:46 > tests/test_do_not_error.py:46 > tests/test_do_not_error.py:46 > tests/test_do_not_error.py:46 > tests/test_do_not_error.py:46 > > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/tests/test_do_not_error.py:46: > HypothesisDeprecationWarning: `Healthcheck.all()` is deprecated; use > `list(HealthCheck)` instead. > The `hypothesis codemod` command-line tool can automatically refactor > your code to fix this warning. > suppress_health_check=HealthCheck.all()) > > tests/test_unary.py:35 > tests/test_unary.py:35 > tests/test_unary.py:35 > tests/test_unary.py:35 > tests/test_unary.py:35 > tests/test_unary.py:35 > tests/test_unary.py:35 > tests/test_unary.py:35 > > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/tests/test_unary.py:35: > HypothesisDeprecationWarning: `Healthcheck.all()` is deprecated; use > `list(HealthCheck)` instead. > The `hypothesis codemod` command-line tool can automatically refactor > your code to fix this warning. > suppress_health_check=HealthCheck.all()) > > tests/test_unary.py:100 > tests/test_unary.py:100 > tests/test_unary.py:100 > tests/test_unary.py:100 > tests/test_unary.py:100 > tests/test_unary.py:100 > tests/test_unary.py:100 > tests/test_unary.py:100 > > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/tests/test_unary.py:100: > HypothesisDeprecationWarning: `Healthcheck.all()` is deprecated; use > `list(HealthCheck)` instead. > The `hypothesis codemod` command-line tool can automatically refactor > your code to fix this warning. > suppress_health_check=HealthCheck.all()) > > tests/test_unary.py:164 > tests/test_unary.py:164 > tests/test_unary.py:164 > tests/test_unary.py:164 > tests/test_unary.py:164 > tests/test_unary.py:164 > tests/test_unary.py:164 > tests/test_unary.py:164 > > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/tests/test_unary.py:164: > HypothesisDeprecationWarning: `Healthcheck.all()` is deprecated; use > `list(HealthCheck)` instead. > The `hypothesis codemod` command-line tool can automatically refactor > your code to fix this warning. > suppress_health_check=HealthCheck.all()) > > tests/test_unary.py:206 > tests/test_unary.py:206 > tests/test_unary.py:206 > tests/test_unary.py:206 > tests/test_unary.py:206 > tests/test_unary.py:206 > tests/test_unary.py:206 > tests/test_unary.py:206 > > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/tests/test_unary.py:206: > HypothesisDeprecationWarning: `Healthcheck.all()` is deprecated; use > `list(HealthCheck)` instead. > The `hypothesis codemod` command-line tool can automatically refactor > your code to fix this warning. > suppress_health_check=HealthCheck.all()) > > tests/test_unary.py:235 > tests/test_unary.py:235 > tests/test_unary.py:235 > tests/test_unary.py:235 > tests/test_unary.py:235 > tests/test_unary.py:235 > tests/test_unary.py:235 > tests/test_unary.py:235 > > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/tests/test_unary.py:235: > HypothesisDeprecationWarning: `Healthcheck.all()` is deprecated; use > `list(HealthCheck)` instead. > The `hypothesis codemod` command-line tool can automatically refactor > your code to fix this warning. > suppress_health_check=HealthCheck.all()) > > tests/test_unary.py:274 > tests/test_unary.py:274 > tests/test_unary.py:274 > tests/test_unary.py:274 > tests/test_unary.py:274 > tests/test_unary.py:274 > tests/test_unary.py:274 > tests/test_unary.py:274 > > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/tests/test_unary.py:274: > HypothesisDeprecationWarning: `Healthcheck.all()` is deprecated; use > `list(HealthCheck)` instead. > The `hypothesis codemod` command-line tool can automatically refactor > your code to fix this warning. > suppress_health_check=HealthCheck.all()) > > tests/test_unary.py:292 > tests/test_unary.py:292 > tests/test_unary.py:292 > tests/test_unary.py:292 > tests/test_unary.py:292 > tests/test_unary.py:292 > tests/test_unary.py:292 > tests/test_unary.py:292 > > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/tests/test_unary.py:292: > HypothesisDeprecationWarning: `Healthcheck.all()` is deprecated; use > `list(HealthCheck)` instead. > The `hypothesis codemod` command-line tool can automatically refactor > your code to fix this warning. > suppress_health_check=HealthCheck.all()) > > tests/test_unary.py:317 > tests/test_unary.py:317 > tests/test_unary.py:317 > tests/test_unary.py:317 > tests/test_unary.py:317 > tests/test_unary.py:317 > tests/test_unary.py:317 > tests/test_unary.py:317 > > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/tests/test_unary.py:317: > HypothesisDeprecationWarning: `Healthcheck.all()` is deprecated; use > `list(HealthCheck)` instead. > The `hypothesis codemod` command-line tool can automatically refactor > your code to fix this warning. > suppress_health_check=HealthCheck.all()) > > .pybuild/cpython3_3.11_pyranges/build/tests/test_binary.py: 18000 warnings > > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/tests/test_binary.py:349: > FutureWarning: In a future version of pandas all arguments of DataFrame.drop > except for the argument 'labels' will be keyword-only. > bedtools_df = bedtools_df.drop("Chromosome2", 1) > > .pybuild/cpython3_3.11_pyranges/build/tests/test_binary.py: 18000 warnings > > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/tests/test_binary.py:544: > FutureWarning: In a future version of pandas all arguments of DataFrame.drop > except for the argument 'labels' will be keyword-only. > bedtools_df = bedtools_df.drop("Chromosome2", 1) > > .pybuild/cpython3_3.11_pyranges/build/tests/test_binary.py: 11940 warnings > > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/pyranges/pyranges.py:2503: > FutureWarning: is_monotonic is deprecated and will be removed in a future > version. Use is_monotonic_increasing instead. > if not result.__IX__.is_monotonic: > > .pybuild/cpython3_3.11_pyranges/build/tests/test_genomicfeatures.py: 119 > warnings > > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/tests/test_genomicfeatures.py:40: > DeprecationWarning: In a future version, `df.iloc[:, i] = newvals` will > attempt to set the values inplace instead of always setting a new array. To > retain the old behavior, use either `df[df.columns[i]] = newvals` or, if > columns are non-unique, `df.isetitem(i, newvals)` > x.loc[:, "Start"] = x.Start.astype(int) > > .pybuild/cpython3_3.11_pyranges/build/tests/test_unary.py: 2000 warnings > > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/tests/test_unary.py:119: > FutureWarning: The squeeze argument has been deprecated and will be removed > in a future version. Append .squeeze("columns") to the call to squeeze. > > > bedtools_df = pd.read_csv( > > .pybuild/cpython3_3.11_pyranges/build/tests/test_unary.py: 2000 warnings > > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/tests/test_unary.py:193: > DeprecationWarning: In a future version, `df.iloc[:, i] = newvals` will > attempt to set the values inplace instead of always setting a new array. To > retain the old behavior, use either `df[df.columns[i]] = newvals` or, if > columns are non-unique, `df.isetitem(i, newvals)` > expected.loc[:, "Cluster"] = expected.Cluster.astype(np.int32) > > .pybuild/cpython3_3.11_pyranges/build/tests/test_concat.py::test_concat_stranded_unstranded > .pybuild/cpython3_3.11_pyranges/build/tests/test_concat.py::test_concat_unstranded_stranded > > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/pyranges/methods/concat.py:47: > DeprecationWarning: In a future version, `df.iloc[:, i] = newvals` will > attempt to set the values inplace instead of always setting a new array. To > retain the old behavior, use either `df[df.columns[i]] = newvals` or, if > columns are non-unique, `df.isetitem(i, newvals)` > v.loc[:, "Strand"] = type_v.cat.add_categories(["."]) > > .pybuild/cpython3_3.11_pyranges/build/tests/test_count_overlaps.py::test_strand_vs_strand_same > .pybuild/cpython3_3.11_pyranges/build/tests/test_count_overlaps.py::test_strand_vs_strand_same > .pybuild/cpython3_3.11_pyranges/build/tests/test_count_overlaps.py::test_strand_vs_strand_same > .pybuild/cpython3_3.11_pyranges/build/tests/test_count_overlaps.py::test_strand_vs_strand_same > .pybuild/cpython3_3.11_pyranges/build/tests/test_count_overlaps.py::test_strand_vs_strand_same > .pybuild/cpython3_3.11_pyranges/build/tests/test_count_overlaps.py::test_strand_vs_strand_same > > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/pyranges/multioverlap.py:155: > DeprecationWarning: In a future version, `df.iloc[:, i] = newvals` will > attempt to set the values inplace instead of always setting a new array. To > retain the old behavior, use either `df[df.columns[i]] = newvals` or, if > columns are non-unique, `df.isetitem(i, newvals)` > df.loc[:, names] = df[names].astype(np.int32) > > .pybuild/cpython3_3.11_pyranges/build/tests/test_unary.py: 1000 warnings > > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build/tests/test_unary.py:251: > FutureWarning: The squeeze argument has been deprecated and will be removed > in a future version. Append .squeeze("columns") to the call to squeeze. > > > bedtools_df = pd.read_csv( > > -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html > =========================== short test summary info > ============================ > FAILED tests/test_unary.py::test_getitem - > hypothesis.errors.FailedHealthChec... > ========== 1 failed, 530 passed, 53245 warnings in 3159.08s (0:52:39) > ========== > E: pybuild pybuild:388: test: plugin distutils failed with: exit code=1: cd > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyranges/build; python3.11 -m pytest > -n 8 > dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.11 > returned exit code 13 The full build log is available from: http://qa-logs.debian.net/2023/07/24/pyranges_0.0.111+ds-4_unstable.log All bugs filed during this archive rebuild are listed at: https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20230724;users=lu...@debian.org or: https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20230724&fusertaguser=lu...@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! If you reassign this bug to another package, please mark it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.
