Source: dialign
Version: 2.2.1-11
Severity: serious
Justification: FTBFS
Tags: trixie sid ftbfs
User: lu...@debian.org
Usertags: ftbfs-20240313 ftbfs-trixie ftbfs-impfuncdef

Hi,

During a rebuild of all packages in sid, your package failed to build
on amd64.

This is most likely caused by a change in dpkg 1.22.6, that enabled
-Werror=implicit-function-declaration. For more information, see
https://wiki.debian.org/qa.debian.org/FTBFS#A2024-03-13_-Werror.3Dimplicit-function-declaration

Relevant part (hopefully):
> gcc -g -O2 -Werror=implicit-function-declaration 
> -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong 
> -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c 
> -O -I-DCONS input.c
> output.c:64:9: warning: type defaults to ‘int’ in declaration of ‘plot_calc’ 
> [-Wimplicit-int]
>    64 |  extern plot_calc( int num , int e_len, float *w_count, float *pl,
>       |         ^~~~~~~~~
> output.c:66:9: warning: type defaults to ‘int’ in declaration of 
> ‘wgt_type_count’ [-Wimplicit-int]
>    66 |  extern wgt_type_count( int num , int e_len, int *plus_cnt, int 
> *minus_cnt,
>       |         ^~~~~~~~~~~~~~
> input.c: In function ‘exclude_frg_read’:
> input.c:65:5: error: implicit declaration of function ‘erreur’ 
> [-Werror=implicit-function-declaration]
>    65 |     erreur("\n\n cannot find file with excluded fragments \n\n\n");
>       |     ^~~~~~
> dialign.c:261:1: warning: return type defaults to ‘int’ [-Wimplicit-int]
>   261 | main(int argc, char **argv)
>       | ^~~~
> regex.c:154:1: warning: return type defaults to ‘int’ [-Wimplicit-int]
>   154 | seq_parse( char *mot_regex ) {
>       | ^~~~~~~~~
> anchor.c: In function ‘multi_anc_read’:
> anchor.c:118:5: error: implicit declaration of function ‘erreur’ 
> [-Werror=implicit-function-declaration]
>   118 |     erreur("\n\n cannot find file with anchor points \n\n\n");
>       |     ^~~~~~
> dialign.c: In function ‘main’:
> dialign.c:392:4: error: implicit declaration of function ‘regex_parse’ 
> [-Werror=implicit-function-declaration]
>   392 |    regex_parse( mot_regex ) ;
>       |    ^~~~~~~~~~~
> anchor.c:131:10: error: implicit declaration of function ‘word_count’ 
> [-Werror=implicit-function-declaration]
>   131 |     if(  word_count( line ) == 6  ) {
>       |          ^~~~~~~~~~
> dialign.c:487:5: error: implicit declaration of function ‘seq_parse’ 
> [-Werror=implicit-function-declaration]
>   487 |     seq_parse( mot_regex ) ;
>       |     ^~~~~~~~~
> dialign.c:619:3: error: implicit declaration of function ‘exclude_frg_read’ 
> [-Werror=implicit-function-declaration]
>   619 |   exclude_frg_read ( input_name , exclude_list ) ;
>       |   ^~~~~~~~~~~~~~~~
> functions.c:856:1: warning: return type defaults to ‘int’ [-Wimplicit-int]
>   856 | wgt_type_count( int num , int e_len, int *plus_cnt, int *minus_cnt,
>       | ^~~~~~~~~~~~~~
> functions.c:885:1: warning: return type defaults to ‘int’ [-Wimplicit-int]
>   885 | plot_calc( int num , int e_len, float *w_count, float *pl,
>       | ^~~~~~~~~
> cc1: some warnings being treated as errors
> make[2]: *** [makefile:50: anchor.o] Error 1


The full build log is available from:
http://qa-logs.debian.net/2024/03/13/dialign_2.2.1-11_unstable.log

All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20240313;users=lu...@debian.org
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20240313&fusertaguser=lu...@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects

If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.

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