Bug#852004: RFP for bioperl's Bio-EUtilities

2017-01-27 Thread Andreas Tille
On Fri, Jan 27, 2017 at 12:23:22PM +, Carnë Draug wrote: > Please upload with the current patch. We are currently fixing this > upstream [1] but it might take a while. The reason is that while > fixing this we noticed there is no code to reproduce the xml files > used in the test suite (they

Bug#852004: RFP for bioperl's Bio-EUtilities

2017-01-27 Thread Carnë Draug
On 27 January 2017 at 12:03, Andreas Tille wrote: > [dropped debian-perl list from CC] > > Hi Carnė, > > On Thu, Jan 26, 2017 at 06:12:41PM +, Carnė Draug wrote: >> I have attached a git patch which adds a quilt patch to the repos. >> This change inlines the DTDs in the xml

Bug#852004: RFP for bioperl's Bio-EUtilities

2017-01-27 Thread Andreas Tille
[dropped debian-perl list from CC] Hi Carnë, On Thu, Jan 26, 2017 at 06:12:41PM +, Carnë Draug wrote: > I have attached a git patch which adds a quilt patch to the repos. > This change inlines the DTDs in the xml files and pdebuild now > succeeds. > > If this change fixes it for debian, we

Bug#852004: RFP for bioperl's Bio-EUtilities

2017-01-26 Thread Carnë Draug
I have attached a git patch which adds a quilt patch to the repos. This change inlines the DTDs in the xml files and pdebuild now succeeds. If this change fixes it for debian, we can apply it upstream. Carnë From 38a2038d0da47f6ac6b853b20b2934260257381d Mon Sep 17 00:00:00 2001 From:

Bug#852004: RFP for bioperl's Bio-EUtilities

2017-01-24 Thread Fields, Christopher J
On 1/24/17, 2:03 PM, "carandr...@gmail.com on behalf of Carnë Draug" wrote: >>... >> Yes, I know. I simply have forwarded the issue upstream since the RFP >> came from upstream and I considered it more sensible if they provide >>

Bug#852004: RFP for bioperl's Bio-EUtilities

2017-01-24 Thread Carnë Draug
On 24 January 2017 at 07:26, Andreas Tille wrote: > Hi Gregor, > > On Mon, Jan 23, 2017 at 11:45:29PM +0100, gregor herrmann wrote: >> >> The tests fail for me as well, in a chroot with networking firewalled >> off. >> >> The errors are slightly different, probably because I

Bug#852004: RFP for bioperl's Bio-EUtilities

2017-01-23 Thread Andreas Tille
Hi Gregor, On Mon, Jan 23, 2017 at 11:45:29PM +0100, gregor herrmann wrote: > > The tests fail for me as well, in a chroot with networking firewalled > off. > > The errors are slightly different, probably because I have http_proxy > set: > > http error : Operation in progress > XML::Simple

Bug#852004: RFP for bioperl's Bio-EUtilities

2017-01-23 Thread gregor herrmann
On Mon, 23 Jan 2017 22:45:24 +0100, Andreas Tille wrote: > > The first is from a missing dependency (Bio::ASN1::EntrezGene), > > which is really optional (the comp test should skip that > > directory). The other is from XML::Simple, which is unusual; I’m > > wondering whether the underlying XML

Bug#852004: RFP for bioperl's Bio-EUtilities

2017-01-23 Thread Fields, Christopher J
r...@gmail.com on behalf of carandraug+...@gmail.com> wrote: > > On 23 January 2017 at 12:40, Andreas Tille <andr...@an3as.eu> wrote: > > Hi Carnė, > > > > On Fri, Jan 20, 2017 at 05:44:00PM +00

Bug#852004: RFP for bioperl's Bio-EUtilities

2017-01-23 Thread Andreas Tille
quot; > <carandr...@gmail.com on behalf of carandraug+...@gmail.com> wrote: > > On 23 January 2017 at 12:40, Andreas Tille <andr...@an3as.eu> > wrote: > > Hi Carnė, > > > > On Fri, Jan 20, 2017 at

Bug#852004: RFP fpr bioperl's Bio-EUtilities

2017-01-23 Thread Fields, Christopher J
gt; On Fri, Jan 20, 2017 at 05:44:00PM +0000, Carnė Draug wrote: >> I have filled a RFP (bug # 852004) for bioperl's Bio-EUtilities >> package [1]. Unlike Bio-Coordinate, which was split from bioperl and >> was recently packaged in Debian, Bio-E

Bug#852004: RFP fpr bioperl's Bio-EUtilities

2017-01-23 Thread Fields, Christopher J
randraug+...@gmail.com> wrote: On 23 January 2017 at 12:40, Andreas Tille <andr...@an3as.eu> wrote: > Hi Carnė, > > On Fri, Jan 20, 2017 at 05:44:00PM +, Carnė Draug wrote: >> I have filled a RFP (bug # 852004) for bioperl

Bug#852004: RFP fpr bioperl's Bio-EUtilities

2017-01-23 Thread Fields, Christopher J
> On Fri, Jan 20, 2017 at 05:44:00PM +, Carnė Draug wrote: >> I have filled a RFP (bug # 852004) for bioperl's Bio-EUtilities >> package [1]. Unlike Bio-Coordinate, which was split from bioperl and >> was recently packaged in Debian, Bio-EUtilities development s

Bug#852004: RFP fpr bioperl's Bio-EUtilities

2017-01-23 Thread Carnë Draug
On 23 January 2017 at 12:40, Andreas Tille <andr...@an3as.eu> wrote: > Hi Carnė, > > On Fri, Jan 20, 2017 at 05:44:00PM +, Carnė Draug wrote: >> I have filled a RFP (bug # 852004) for bioperl's Bio-EUtilities >> package [1]. Unlike Bio-Coordinate, w

Bug#852004: RFP fpr bioperl's Bio-EUtilities

2017-01-23 Thread Andreas Tille
Hi Carnë, On Fri, Jan 20, 2017 at 05:44:00PM +, Carnë Draug wrote: > I have filled a RFP (bug # 852004) for bioperl's Bio-EUtilities > package [1]. Unlike Bio-Coordinate, which was split from bioperl and > was recently packaged in Debian, Bio-EUtilities development started > a