Hi,
Yes, Kalign is on v3 now.
I've pushed some patches to fix this bug. All build-time tests pass now.
Autopkgtests don't, however, but that issue seems to be unrelated.
Please take a look at https://salsa.debian.org/med-team/bioperl-run and
verify the patches. This is my first time working with
I have seen per exit codes of 256 for other bioperl-run wrappers in the past
where the application API changed (constant game of playing catchup
unfortunately). That seems to be the case here based on the error. Is kalign
is now at v3?
chris
On 3/30/20, 2:57 AM, "Andreas Tille" wrote:
Control: tags -1 help
Hi,
currently bioperl-run fails. I think the issue is:
> # Failed test 'Code tested only on kalign versions >= 2'
> # at t/Kalign.t line 23.
> # got: ''
> # expected: '1'
> [2020-03-22 03:18:02] : ERROR : Input alignment format could not be
>
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