Bug#958840: kmer: autopkgtest regression: No module named 'localAlignerInterface'

2020-05-18 Thread Andreas Tille
Hi Nilesh, thanks for the quick check. Given that I experienced some false positives in the past I just uploaded and we'll see what ci.debian.org will say. Kind regards Andreas. On Mon, May 18, 2020 at 01:05:16PM +0530, Nilesh Patra wrote: > On Mon, 18 May 2020 at 12:39, Andreas Tille

Bug#958840: kmer: autopkgtest regression: No module named 'localAlignerInterface'

2020-05-18 Thread Nilesh Patra
On Mon, 18 May 2020 at 12:39, Andreas Tille wrote: > > I've merged this and tried a test build including running autopkgtest in > my pbuilder environment. Unfortunately the latter test is now failing with > > ... > autopkgtest [06:48:10]: test atac-unit-test: [--- >

Bug#958840: kmer: autopkgtest regression: No module named 'localAlignerInterface'

2020-05-18 Thread Andreas Tille
On Mon, May 18, 2020 at 01:27:52AM +, Antoni Villalonga wrote: > For some reason I din't included all my previous work on my merge request. I suspect this "some reason" was that salsa and other infrastructure of Debian went offline at that day for several hours. > I've recovered most of it

Bug#958840: kmer: autopkgtest regression: No module named 'localAlignerInterface'

2020-05-17 Thread Antoni Villalonga
Hi, For some reason I din't included all my previous work on my merge request. I've recovered most of it from a binary package I've found on my machine. And after lot of hours I've found the python module naming issue (see d/rules changes). All changes are now included on:

Bug#958840: kmer: autopkgtest regression: No module named 'localAlignerInterface'

2020-05-15 Thread Andreas Tille
Hi Antoni, since you once dived into this which was interrupted when Salsa was offline: Would you be able to finish this? That would be really helpful. Kind regards Andreas. On Tue, Apr 28, 2020 at 08:43:55PM +0200, Andreas Tille wrote: > On Tue, Apr 28, 2020 at 04:43:30PM +,

Bug#958840: kmer: autopkgtest regression: No module named 'localAlignerInterface'

2020-04-28 Thread Antoni Villalonga
Hi, On Tue, Apr 28, 2020 at 11:44:28AM +0200, Andreas Tille wrote: > Hi Antoni > > On Sat, Apr 25, 2020 at 09:02:07PM +0200, Paul Gevers wrote: > > ... > > python3 /usr/bin/../lib/atac/bin/AtacDriver.py > >

Bug#958840: kmer: autopkgtest regression: No module named 'localAlignerInterface'

2020-04-28 Thread Andreas Tille
On Tue, Apr 28, 2020 at 04:43:30PM +, Antoni Villalonga wrote: > > I think I've faced that problem and fixed. > Fix should be included into '2to3.patch' > > I think the relevant part is: > > --- a/atac-driver/chainer/localalign/localAlignerInterfacemodule.C > +++

Bug#958840: kmer: autopkgtest regression: No module named 'localAlignerInterface'

2020-04-28 Thread Andreas Tille
Hi Antoni On Sat, Apr 25, 2020 at 09:02:07PM +0200, Paul Gevers wrote: > ... > python3 /usr/bin/../lib/atac/bin/AtacDriver.py > /tmp/autopkgtest-lxc.pom4prd4/downtmp/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended > > Traceback (most recent call last): > File

Bug#958840: kmer: autopkgtest regression: No module named 'localAlignerInterface'

2020-04-25 Thread Paul Gevers
Source: kmer Version: 0~20150903+r2013-7 X-Debbugs-CC: debian...@lists.debian.org Severity: serious User: debian...@lists.debian.org Usertags: regression Dear maintainer(s), With a recent upload of kmer the autopkgtest of kmer fails in testing when that autopkgtest is run with the binary