Control tags -1 fixed-upstream pending
Aaron M. Ucko, on 2021-10-20:
> Étienne Mollier writes:
>
> > The issue turned out to be related, and I came up with some
> > hackery to smoothen the transition to python-biopython 1.79.
> > The corresponding patch is in attachment. I welcome remarks,
> >
Étienne Mollier writes:
> The issue turned out to be related, and I came up with some
> hackery to smoothen the transition to python-biopython 1.79.
> The corresponding patch is in attachment. I welcome remarks,
> since I'm only half happy with the result, although I tried hard
> to make sure
Control: tags -1 + patch
Hello,
Étienne Mollier, on 2021-10-19:
> After some digging, I found one possible cause of breakage.
> Since biopython 1.79, Bio.Seq.UnknownSeq is deprecated [1], so
> it might be possible that ncbi-acc-download does not parse the
> instanciation of that class very well.
Hi Aaron, Hi Andreas,
Andreas Tille, on 2021-10-19:
> Am Tue, Oct 19, 2021 at 07:55:07AM -0400 schrieb Aaron M. Ucko:
> > Étienne Mollier writes:
> >
> > > E - LOCUS NC_007194 60 bpDNA
> > > linear CON 03-APR-2018
> > > E ?
Am Tue, Oct 19, 2021 at 07:55:07AM -0400 schrieb Aaron M. Ucko:
> Étienne Mollier writes:
>
> > E - LOCUS NC_007194 60 bpDNA
> > linear CON 03-APR-2018
> > E ? ^^^
> > ^^ ^^^
Étienne Mollier writes:
> E - LOCUS NC_007194 60 bpDNA
> linear CON 03-APR-2018
> E ? ^^^
> ^^ ^^^ ^^
> E + LOCUS NC_0071944918979 bp
On Mon, 18 Oct 2021 21:38:27 +0200 =?utf-8?Q?=C3=89tienne?= Mollier
wrote:
Note that I think the package
downloads resources from the Internet during the test at build
time too, so would might be a serious policy violation, but I
haven't checked for sure yet.
Well, that'd be odd.
I think
Source: ncbi-acc-download
Version: 0.2.7-1
Severity: important
Tags: ftbfs
Dear Maintainer,
I am trying to assess the side effects of an upgrade of the
package python-biopython to 1.79 to its reverse dependencies.
Pseudo-excuses look alright, except for ncbi-acc-download [1].
[1]:
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