Hi Andreas,
I think the future for prime-phylo (C++) does not look that good.
No development has happened for many years as the project was abandoned
for a Java implementation.
https://github.com/arvestad/jprime
Although I maintained the web site
http://prime.sbc.su.se
before, now the DNS has
Hi Andreas,
I did the debian packaging as part of a job project with Lars
Arvestad, who is one of the main authors of prime-phylo.
Since then I've switched working group so I am not so up-to-date about
the status of the prime-phylo development.
The best thing would be if we could involve Lars more
, Dec 17, 2012 at 05:24:00PM +0100, Erik Sjölund wrote:
How do I upload the new source code release into git.debian.org?
http://debian-med.alioth.debian.org/docs/policy.html
Seek for pristine-tar.
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To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org
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On Tue, Dec 18, 2012 at 2:30 PM, Andreas Tille andr...@an3as.eu wrote:
Sometimes it is hard to
describe things which are clear to the people who are comfortable with
the procedure to describe it for newcomers - so any hint is welcome.
I understand. I'll think about it...
If you ask me I
On Tue, Dec 18, 2012 at 4:53 PM, Andreas Tille andr...@an3as.eu wrote:
Thanks and uploaded.
Thanks a lot.
BTW, in the Debian Med team we did not formalised the sponsering process
via filing RFS bugs (for no specific reason - it just worked without
this.)
Good to know.
PS: Please let us
I have now created:
http://anonscm.debian.org/gitweb/?p=debian-med/prime-phylo.git
In the debian sub directory I also created the file
upstream
where I provided information about the scientific paper
Simultaneous Bayesian gene tree reconstruction and reconciliation analysis
I used utf-8
I followed your suggestion and changed the license short name to MTL.
Regarding the file
src/cxx/libraries/prime/beep2blas.hh
when I started packaging Prime I tried to investigate where the file
content came from.
In the file the following text could be read:
I made a new upstream release
http://prime.sbc.su.se/download/prime-phylo-1.0.11.tar.gz
where I added the extra copyright statement
// Copyright: Modifications to the original file by Bengt Sennblad
bengt.sennb...@ki.se 2007-2012
to the file
src/cxx/libraries/prime/beep2blas.hh
I also
Hi Andreas,
I've now created the account eriksjolund-guest at alioth.debian.org
I would prefer to use git for the repository.
If I understand you correctly, the next step will be that you now
upload the debian packaging sub directory from prime-phylo into the
Vcs? If you have any suggestions
would be very happy to welcome you in
our team.
Kind regards
Andreas.
[1] http://debian-med.alioth.debian.org/tasks/bio
[2] http://debian-med.alioth.debian.org/docs/policy.html
Package: wnpp
Severity: wishlist
Owner: Erik Sjölund erik.sjol...@gmail.com
* Package name : prime
-puzzle
but none provide the same functionality.
I previously sent an ITP bug report for prime-phylo
http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=684039
Should I have replied to that bug report instead of sending this one?
(This is my first package submission)
Cheers,
Erik Sjölund
Package: wnpp
Severity: wishlist
Owner: Erik Sjölund erik.sjol...@gmail.com
* Package name : prime-phylo
Version : 1.0.3
Upstream Author : Lars Arvestada...@csc.kth.se, Bengt
Sennbladbengt.sennb...@ki.se and others
* URL : http://prime.sbc.su.se
* License
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