Bug#1066036: fixed in black 24.4.2-2~0exp0

2024-05-05 Thread Michael R. Crusoe
control: reopen -1 Status of the experimental build: all green except for one unoffical arch (ia64); though mips64el is yet to start building https://buildd.debian.org/status/package.php?p=black=experimental And the results of running the autopkgtests for build-deps of black: possible

Bug#1070445: numpy: Proposal to bring back the python-numpy-doc package

2024-05-05 Thread Michael R. Crusoe
Source: numpy Severity: wishlist Tags: patch X-Debbugs-Cc: cru...@debian.org Dear numpy maintainers, I would like to bring back the python-numpy-doc binary package as part of my personal interest in seeing high quality -doc packages in the Python scientific/research computing area. Here are

Bug#1070315: python3-build: Please package version 1.2.0/1.2.1 for verbose builds

2024-05-03 Thread Michael R. Crusoe
Package: python3-build Version: 1.1.1-1 Severity: normal X-Debbugs-Cc: cru...@debian.org Dear Maintainer, Please update the python-build package to version 1.2.0 (or the latest, 1.2.1), which adds the "--verbose" / "-v" command line option. This is helpful during (Debian) package building for

Bug#852429: devscripts: [uscan] support 7z in uscan repack stuff

2024-05-02 Thread Michael R. Crusoe
On Sat, 28 Jan 2017 12:14:14 +0900 Osamu Aoki wrote: > Hi, > > On Tue, Jan 24, 2017 at 12:19:16PM +0100, Félix Sipma wrote: > > Package: devscripts > > Version: 2.17.0 > > Severity: wishlist > > > > It would be nice to have .7z support in uscan repack stuff. > > 7zip archiver is in main so this

Bug#1069932: liquidctl: internal version is wrongly reported as 0.0.0

2024-04-27 Thread Michael R. Crusoe
d. + * d/control: build-dep on setuptools-scm to fix wrong "0.0.0" version + + -- Michael R. Crusoe Sat, 27 Apr 2024 11:45:29 +0200 + liquidctl (1.13.0-2) unstable; urgency=medium * Update watch file. diff -Nru liquidctl-1.13.0/debian/control liquidctl-1.13.0/debian/control --- liquidctl-

Bug#1069896: python3-tqdm: internal version is wrongly reported as 0.0.0

2024-04-26 Thread Michael R. Crusoe
LER > /usr/lib/python3.12/dist-packages/tqdm-0.0.0.dist-info/top_level.txt https://packages.debian.org/trixie/all/python3-tqdm/filelist Attached is a patch to fix this. commit 57f42a5693cb8fd1c0f80a0f605396d18ae24a0c Author: Michael R. Crusoe Date: Fri Apr 26 17:35:10 2024 +0200 d/watch:

Bug#1069850: python3-locust: internal version is wrongly reported as 0.0.0

2024-04-25 Thread Michael R. Crusoe
evel.txt https://packages.debian.org/sid/all/python3-locust/filelist Attached is a patch to fix this. And for your convenience, I've opened a MR on Salsa https://salsa.debian.org/morph/locust/-/merge_requests/1 commit 6ff25b492074b540ae83807f532f09f925b2a9a3 Author: Michael R. Crusoe Date: Thu Apr 25 21:24:24 20

Bug#1069837: python3-doc8: internal version is wrongly reported as 0.0.0

2024-04-25 Thread Michael R. Crusoe
I have also added a commit to the MR which enables the use of pybuild to run the tests, and then turns on pybuild-autopkgtest to enable a quicker migration of the package to testing:

Bug#1069837: python3-doc8: internal version is wrongly reported as 0.0.0

2024-04-25 Thread Michael R. Crusoe
ian.org/sid/all/python3-doc8/filelist Attached is a patch to fix this. And for your convenience, I've opened a MR on Salsa https://salsa.debian.org/openstack-team/libs/python-doc8/-/merge_requests/4 Author: Michael R. Crusoe Date: Thu Apr 25 19:03:38 2024 +0300 d/control: build-dep on

Bug#1069833: git-cola: internal version is wrongly reported as 0.0.0

2024-04-25 Thread Michael R. Crusoe
Package: git-cola Version: 4.3.2-1 Severity: normal Tags: patch X-Debbugs-Cc: cru...@debian.org Dear Maintainer, I noticed that your package dosage doesn't know its own version number, due to upstream using setuptools-scm: > /usr/lib/python3/dist-packages/git_cola-0.0.0.dist-info/INSTALLER >

Bug#1069832: dosage: internal version is wrongly reported as 0.0.0

2024-04-25 Thread Michael R. Crusoe
.debian.org/sid/all/dosage/filelist Attached is a patch to fix this. And for your convenience, I've opened a MR on Salsa: https://salsa.debian.org/debian/dosage/-/merge_requests/1 commit 5fce4d3021304f19e7bb58886f0917e1a3959388 Author: Michael R. Crusoe Date: Thu Apr 25 16:39:05 2024 +0300

Bug#1069568: ITP: python-hatch-mypyc -- Hatch build hook plugin for Mypyc

2024-04-20 Thread Michael R. Crusoe
Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name : python-hatch-mypyc Version : 0.16.0 Upstream Author : Ofek Lev * URL : https://github.com/ofek/hatch-mypyc * License : Expat Programming Lang: Python Description : Hatch build hook plugin for Mypyc Provides a build hook

Bug#1066036: black: Consider building faster native packages with mypyc

2024-04-20 Thread Michael R. Crusoe
On 19/04/2024 07.17, Julian Gilbey wrote: On Mon, Mar 11, 2024 at 02:49:26PM +0100, Michael R. Crusoe wrote: Package: black Version: 23.1.0-1 Severity: wishlist X-Debbugs-Cc: cru...@debian.org Dear Maintainer, I noticed that your package supports building native code extensions using mypyc

Bug#1067234: symfit: autopkgtest regression with NumPy 1.26

2024-04-12 Thread Michael R. Crusoe
On Mon, 8 Apr 2024 17:09:33 + Graham Inggs wrote: > Control: tags -1 + patch > > Hi Maintainer > > While asserting that no warnings are raised is a useful test for the > upstream developers, I don't think it makes sense for downstreams. > > I propose to disable the assertion as follows: > >

Bug#1067824: RM: python-cutadapt [s390x] -- ROM; build and runtime dependency no longer builds on s390x

2024-03-27 Thread Michael R. Crusoe
Package: ftp.debian.org Severity: normal User: ftp.debian@packages.debian.org Usertags: remove X-Debbugs-Cc: python-cutad...@packages.debian.org, cru...@debian.org Control: affects -1 + src:python-cutadapt Control: block 1067823 by -1 Hello, python-cutadapt is a biomedical research library

Bug#1067823: RM: python-dnaio [s390x] -- ROM; biomedical research library, new upstream version no longer supports big-endian

2024-03-27 Thread Michael R. Crusoe
Package: ftp.debian.org Severity: normal User: ftp.debian@packages.debian.org Usertags: remove X-Debbugs-Cc: python-dn...@packages.debian.org, cru...@debian.org Control: affects -1 + src:python-dnaio Hello, python-dnaio is a biomedical research library; upstream does not test on big-endian

Bug#1067540: setuptools: Please upgrade to version 69.0.0 or later so that type information is automatically included

2024-03-23 Thread Michael R. Crusoe
Source: setuptools Severity: normal X-Debbugs-Cc: cru...@debian.org Control: affects -1 python3-cheroot Dear maintainer, Some Python packages rely on the behaviour in recent setuptools that automatically includes the type information files ("*.pyi") as part of the distribution. So it would be

Bug#1067424: python3-sphinx: Needs conflict with old versions of python-flask-restful-doc & python-pylatex-doc

2024-03-21 Thread Michael R. Crusoe
Package: python3-sphinx Version: 5.3.0-4 Severity: normal Tags: patch X-Debbugs-Cc: cru...@debian.org This is blocking sphinx from migrating to Testing. I'm happy to do a team-upload, do let me know. diff --git a/debian/control b/debian/control index c51ddae3..41ceb0a6 100644 ---

Bug#1067423: RM: libwfa2-dev [armel armhf i386 hppa sh4 x32] -- ROM; non of its rdeps build on 32-bit archs

2024-03-21 Thread Michael R. Crusoe
Package: ftp.debian.org Severity: normal User: ftp.debian@packages.debian.org Usertags: remove X-Debbugs-Cc: libw...@packages.debian.org, cru...@debian.org Control: affects -1 + src:libwfa2 All the packages that source packages that reverse-depend on any of the libwfa2-dev binary packages

Bug#1067166: RM: jellyfish [armel armhf hppa i386] -- ROM; scientific software & upstream doesn't suppport 32-bit systems

2024-03-19 Thread Michael R. Crusoe
worth our time to support 32-bit architectures for scientific computing software. The Jellyfish upstream has specifically stated that they do not want to support 32-bit architectures, and I agree with them: https://github.com/gmarcais/Jellyfish/pull/202#issuecomment-2007544485 -- Michael R

Bug#1067165: RM: crac [i386 armel armhf] -- ROM; scientific software & upstream dependency doesn't suppport 32-bit systems

2024-03-19 Thread Michael R. Crusoe
. This specific request is in support of removing the 32-bit builds of "jellyfish", as upstream does not want to support those architectures. -- Michael R. Crusoe OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1067164: RM: centrifuge [i386 armel armhf hppa] -- ROM; scientific software & upstream dependency doesn't suppport 32-bit systems

2024-03-19 Thread Michael R. Crusoe
software. This specific request is in support of removing the 32-bit builds of "jellyfish", as upstream does not want to support those architectures. -- Michael R. Crusoe OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1060104: dcmtk: FTBFS on armel: Error: bad immediate value for offset (4100)

2024-03-19 Thread Michael R. Crusoe
ed the graphviz build-depend on those arches too, it can of course > be reintroduced once graphviz become installable again. Thanks, Emanuele; I've incorporated your changes on top of Sébastien Jodogne's very recent upload and will be uploading that shortly. > -- Michael R. Crusoe OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1067114: ITP: python-sphinx-codeautolink -- Automatic links from code examples to reference documentation

2024-03-18 Thread Michael R. Crusoe
Package: wnpp Severity: wishlist X-Debbugs-Cc: cru...@debian.org Subject: ITP: python-sphinx-codeautolink -- Automatic links from code examples to reference documentation Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name : python-sphinx-codeautolink Version : 0.15.0

Bug#1066918: nmu: packages that build-depend on the libsimde-dev header-only library

2024-03-15 Thread Michael R. Crusoe
dfsg-1 rna-star_2.7.11b+dfsg-1 salmon_1.10.2+ds1-1 scrappie_1.4.2-8 seqan-raptor_3.0.1+ds-5 snap-aligner_2.0.3+dfsg-2 spoa_4.0.8-1 supertuxkart_1.4+dfsg-3 vg_1.30.0+ds-1 wtdbg2_2.5-9 z3_4.8.12-3.1 . ANY . -m 'Rebuild using libsimde-dev 0.8.0-1.' Thanks! -- Michael R. Crusoe OpenPGP_signature.as

Bug#1066016: python-rdflib-doc: please make the build reproducible.

2024-03-14 Thread Michael R. Crusoe
d, so the CI on Salsa wasn't able to test your MR. No worries, it isn't your fault! I think the patch still helped, we can keep it while you continue your investigations. I really appreciate it! -- Michael R. Crusoe OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1066036: black: Consider building faster native packages with mypyc

2024-03-11 Thread Michael R. Crusoe
, I would be happy to add this to your package. Please let me know. https://pypi.org/project/black/#files Example Debian packages that uses mypyc to compile on many architectures: https://tracker.debian.org/pkg/python-schema-salad -- Michael R. Crusoe

Bug#1066035: python-charset-normalizer: Consider building native packages with mypyc

2024-03-11 Thread Michael R. Crusoe
Team, I would be happy to add this to your package. Please let me know. https://pypi.org/project/charset-normalizer/#files Example Debian packages that uses mypyc to compile on many architectures: https://tracker.debian.org/pkg/python-schema-salad -- Michael R. Crusoe OpenPGP_signature.asc

Bug#1062170: glw: NMU diff for 64-bit time_t transition

2024-03-11 Thread Michael R. Crusoe
. I don't think this patch was effective. There is no package rename and the build log from experimental contains the following warning: > dpkg-gencontrol: warning: Provides field of package libglw1-mesa: substitution variable ${t64:Provides} used, but is not defined -- Michael R. Crusoe OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1066026: ITP: python-pytest-retry -- Adds the ability to retry flaky tests in pytest

2024-03-11 Thread Michael R. Crusoe
Package: wnpp Severity: wishlist X-Debbugs-Cc: cru...@debian.org Subject: ITP: python-pytest-retry -- Adds the ability to retry flaky tests in pytest Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name : python-pytest-retry Version : 1.6.2 Upstream Author : Copyright: (c

Bug#1063688: mypy fails with a combination of argparse and glob

2024-03-09 Thread Michael R. Crusoe
source file) > > Add the following directive to whatever line contains "type=glob.glob" is a > work around: > > # type: ignore[arg-type] Thank you for your report. This was fixed in mypy 1.6.0; I recommend using your workaround in the mean time. -- Michael R. Crusoe OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1064529: python3-hmmlearn: installed metadata wrong, `pip show hmmlearn` shows 0.0.0

2024-02-23 Thread Michael R. Crusoe
-0.0.0.dist-info/METADATA /usr/lib/python3/dist-packages/hmmlearn-0.0.0.dist-info/WHEEL /usr/lib/python3/dist-packages/hmmlearn-0.0.0.dist-info/top_level.txt -- Michael R. Crusoe OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1062661: RM: python-rdflib-jsonld -- ROM; Obsoleted by python3-rdflib 6.x; last use in sid removed

2024-02-02 Thread Michael R. Crusoe
Package: ftp.debian.org Severity: normal User: ftp.debian@packages.debian.org Usertags: remove X-Debbugs-Cc: python-rdflib-jso...@packages.debian.org, cru...@debian.org Control: affects -1 + src:python-rdflib-jsonld Thanks! -- Michael R. Crusoe OpenPGP_signature.asc Description: OpenPGP

Bug#1062212: ontospy: Unnecessary dependency on python3-rdflib-jsonld ; part of rdflib since 6.x

2024-01-31 Thread Michael R. Crusoe
ive that build-deps on python3-rdflib-jsonld. Please apply the attached patch and make a new release so I can remove python3-rdflib-jsonld from the archive. Thanks! -- Michael R. Crusoe Author: Michael R. Crusoe Date: Wed Jan 31 16:47:50 2024 +0100 d/control: remove unused dependency on p

Bug#1061748: ontospy ftbfs with Python 3.12 as default

2024-01-31 Thread Michael R. Crusoe
Dear maintainer, Attached is a patch to fix the Python 3.12 FTBFS. -- Michael R. Crusoe Author: Michael R. Crusoe Date: Wed Jan 31 16:53:11 2024 +0100 d/patches/1006_configparser.patch: Fix Python 3.12 compatability. Closes: #1061748 diff --git a/debian/patches

Bug#1062133: python3-extruct: Unnecessary dependency on python3-rdflib-jsonld ; part of rdflib since 6.x

2024-01-31 Thread Michael R. Crusoe
n the Debian archive that produces a binary depending on python3-rdflib-jsonld. Please apply the attached patch and make a new release so I can remove python3-rdflib-jsonld from the archive. Thanks! -- Michael R. Crusoe diff --git a/debian/patches/01_fix-rdflib-python-version.patch b/debian/patches/

Bug#1061293: ITP: python-spython -- Command line python tool for working with Singularity

2024-01-22 Thread Michael R. Crusoe
Package: wnpp Severity: wishlist X-Debbugs-Cc: cru...@debian.org Subject: ITP: python-spython -- Command line python tool for working with Singularity Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name : python-spython Version : 0.3.13 Upstream Author : , Vanessa Sochat

Bug#1058096: Test suite issues with new version of python3-antlr4 (Was: python3-antlr4: FTBFS: AttributeError: 'TestIntervalSet' object has no attribute 'assertEquals'. Did you mean: 'assertEqual'?)

2023-12-21 Thread Michael R. Crusoe
ee and further upgrades without matching will likely only make the situation worse. Maybe you can add the above note to debian/README.Source after you reverse the upgrade? -- Michael R. Crusoe OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#992180: MR with fix available Re: openmm FTBFS on amd64/arm64/ppc64el

2023-11-23 Thread Michael R. Crusoe
ded tests. Likewise on my personal amd64 laptop. https://salsa.debian.org/debichem-team/openmm/-/merge_requests/1 It won't fix the FTBFS on armel / armhf; that's due to them being detected as arm64 and inappropriate NEON intrinsics being used -- Michael R. Crusoe OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1056165: google.protobuf stubs missing?

2023-11-20 Thread Michael R. Crusoe
the end in debian/python3-typeshed ? -- Michael R. Crusoe OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1055885: workflow: Package name too generic, please pick something more specific

2023-11-13 Thread Michael R. Crusoe
kage would better be named "sogou-workflow" and the binary packages likewise renamed "libsogou-workflow-dev", etc.. Thanks, [0] https://s.apache.org/existing-workflow-systems -- Michael R. Crusoe OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1055787: RM: trinityrnaseq [armel armhf i386 mips64el s390x all] -- ROM; restricted list of supported architectures due to depenedencies

2023-11-11 Thread Michael R. Crusoe
. -- Michael R. Crusoe OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1031192: toil: FTBFS (The job JobClass is requesting 2.0 cores)

2023-10-31 Thread Michael R. Crusoe
On Sat, 21 Oct 2023 13:17:42 +0200 Santiago Vila wrote: > El 21/10/23 a las 12:27, Michael R. Crusoe escribió: > > On Fri, 20 Oct 2023 23:29:46 +0200 Santiago Vila wrote: > > > El 20/10/23 a las 23:08, Andreas Tille escribió: > > > > Am Fri, Oct 20, 2023 at 10:

Bug#1031192: toil: FTBFS (The job JobClass is requesting 2.0 cores)

2023-10-21 Thread Michael R. Crusoe
gt; >> is different than version 5.9.2-2 in the FTP archive, i.e. > >> what I can get by doing "apt-get source toil" in bookworm. Whoops, what a huge mess. Probably my fault. I've re-imported the DSCs for debian/5.9.2-1 and debian/5.9.2-2 and reset the

Bug#1054140: python-refurb: FTBFS with mypy 1.6.0

2023-10-17 Thread Michael R. Crusoe
] https://github.com/dosisod/refurb/pull/296 -- Michael R. Crusoe OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1043266: python3-mypy: stub error message could point to python3-typeshed package

2023-10-05 Thread Michael R. Crusoe
control: tags -1 help newcomer This is a good suggestion. I would happily review a merge request to implement this -- Michael R. Crusoe OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1040106: mypy: deprecation of Python libraries asyncore and asynchat

2023-10-05 Thread Michael R. Crusoe
control: tags -1 wontfix Hello, thank you for checking. However mypy does not use either the asyncore nor asychat libraries; it does contain type hints for those libraries. Please remove "*.pyi" files from your analysis. Cheers, -- Michael R. Crusoe OpenPGP_signature.asc D

Bug#1050388: canu: autopkgtest generates unreasonably large artifacts

2023-09-30 Thread Michael R. Crusoe
Hello, this has been fixed. Can you unblock canu from running on the CI infrastructure? Thanks,

Bug#1043383: python-pcre2 now available in sid

2023-09-14 Thread Michael R. Crusoe
debmutate has migrated to testing, then this package (python-pcre) can be removed from the archive. Cheers, [0] https://tracker.debian.org/pkg/python-pcre2 [1] https://packages.debian.org/unstable/python3-pcre2 [2] https://salsa.debian.org/jelmer/debmutate/-/merge_requests/15 -- Michael R

Bug#1042342: yarl: fix pushed to repo, permission to release?

2023-09-13 Thread Michael R . Crusoe
. + * d/patches/square_bracket_handling.patch: cherry-picked from upstream. +Fixes FTBFS. Closes: #1042342 + + -- Michael R. Crusoe Wed, 13 Sep 2023 17:23:01 +0200 + yarl (1.8.2-1) unstable; urgency=medium * New upstream release diff -Nru yarl-1.8.2/debian/patches/series yarl-1.8.2

Bug#1009815: debmutate.watch: Use perl-compatible regular expressions

2023-09-12 Thread Michael R. Crusoe
sa.debian.org/crusoe/debmutate/-/commit/d55d327c2dd5dd9d225bff665b56959ca9019b59 -- Michael R. Crusoe OpenPGP_signature Description: OpenPGP digital signature

Bug#1051802: RM: python3-typed-ast -- ROM; Upstream end-of-life, replaced by "ast" standard library in Python 3.8+

2023-09-12 Thread Michael R. Crusoe
hon 3.8+ supports all features of typed_ast. typed_ast does not support parsing code that uses syntax introduced in Python 3.8 onwards. We recommend using ast on Python 3.8 or above. -- Michael R. Crusoe OpenPGP_signature Description: OpenPGP digital signature

Bug#1051798: ITP: python-pcre2 -- Python bindings for the PCRE2 regular expression library

2023-09-12 Thread Michael R. Crusoe
Package: wnpp Severity: wishlist X-Debbugs-Cc: cru...@debian.org Subject: ITP: python-pcre2 -- Python bindings for the PCRE2 regular expression library Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name : python-pcre2 Version : 0.2.0+ds Upstream Author : grtetrault

Bug#1051776: libxxhash-dev: libxxhash.pc has doubled ${prefix}s

2023-09-12 Thread Michael R. Crusoe
pkg-config, like seqan-raptor and its autopkgtests Looks like the error came from https://salsa.debian.org/debian/xxhash/-/commit/1ac98075f1dc2da1b188250ff86fe8ac7975bce3 Attached is a patch to fix this -- Michael R. Crusoe commit 91f5401f9535e5490c3c48edfc71abbf7e24956f Author: Michael R

Bug#1049957: mailman3: diff for NMU version 3.3.8-3.1

2023-08-26 Thread Michael R . Crusoe
@@ +mailman3 (3.3.8-3.1) unstable; urgency=medium + + * Non-maintainer upload. + * d/patches/1130.patch: cherry-pick upstream fix to drop +dependency on importlib-resources +d/control: remove python3-importlib-resources +(Closes: #1049957) + + -- Michael R. Crusoe Sat, 26 Aug 2023

Bug#1050282: RM: canu [armel armhf i386 mipsel alpha arc hppa hurd-i386 m68k powerpc sh4] -- ANAIS ROM; upstream only works on architectures with {u,}int128 (basically just 64-bit systems + x32)

2023-08-22 Thread Michael R. Crusoe
). Please remove the binary packages of the incompatible archs, none of which are mentioned anymore in the Debian source package: armel armhf i386 mipsel alpha arc hppa hurd-i386 m68k powerpc sh4 Thanks! -- Michael R. Crusoe OpenPGP_signature Description: OpenPGP digital signature

Bug#1050224: RM: seqan-raptor [s390x] -- ROM; newly-enabled build-time tests reveal big-endian problems

2023-08-22 Thread Michael R. Crusoe
to upload a new Debian revision that enable those build-time tests, and already I see that they fail on s390x. Please remove the existing s390x binary packages from both testing and unstable. Thank you! -- Michael R. Crusoe OpenPGP_signature Description: OpenPGP digital signature

Bug#999936: uwsgi: depends on obsolete pcre3 library

2023-08-22 Thread Michael R. Crusoe
th-lists.debian.net/pipermail/pkg-uwsgi-devel/2023-August/001187.html [1] https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1050177#16 [2] https://qa.debian.org/excuses.php?package=uwsgi Cheers! -- Michael R. Crusoe OpenPGP_signature Description: OpenPGP digital signature

Bug#999936: uwsgi: depends on obsolete pcre3 library

2023-08-22 Thread Michael R. Crusoe
th-lists.debian.net/pipermail/pkg-uwsgi-devel/2023-August/001187.html [1] https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1050177#16 [2] https://qa.debian.org/excuses.php?package=uwsgi Cheers! -- Michael R. Crusoe

Bug#1041078: mongo-cxx-driver-legacy: diff for NMU version 1.1.3-3.2

2023-08-21 Thread Michael R . Crusoe
"-std=c++14" to fix FTBFS with googletest 1.13.0. +Closes: #1041078 + + -- Michael R. Crusoe Mon, 21 Aug 2023 20:39:59 +0200 + mongo-cxx-driver-legacy (1.1.3-3.1) unstable; urgency=medium * Non-maintainer upload. diff -Nru mongo-cxx-driver-legacy-1.1.3/debian/rules mongo-

Bug#1050177: nmu: uwsgi-plugin-php_2.0.21+4+0.0.15 uwsgi-plugin-luajit_2.0.21+3+0.0.8 uwsgi-plugin-mongo_2.0.21+3+0.0.9

2023-08-21 Thread Michael R. Crusoe
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: binnmu X-Debbugs-Cc: uwsgi-plugin-...@packages.debian.org, uwsgi-plugin-...@packages.debian.org, cru...@debian.org Control: affects -1 + src:uwsgi-plugin-php Control: affects -1 +

Bug#1049957: mailman3: does not work with importlib_resources v6

2023-08-21 Thread Michael R. Crusoe
control: tags -1 patch Dear Maintainers, I've submitted a merge request[0] to cherry-pick upstream's fix for this. Please consider releasing this fix so the Debian package for importlib-resources 6.x can migrate to testing[1] and unblock the migration of other packages[2]. Thanks! [0]

Bug#1049965: nmu: freebayes_1.3.6-2

2023-08-17 Thread Michael R. Crusoe
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: binnmu X-Debbugs-Cc: freeba...@packages.debian.org, cru...@debian.org Control: affects -1 + src:freebayes nmu freebayes_1.3.6-2 . ANY . unstable . -m "rebuild using libvcflib 1.0.9+dfsg1-2"

Bug#1039956: ITP: subarch-select -- Select among binaries based upon x86 microarchitecture support

2023-06-29 Thread Michael R. Crusoe
Package: wnpp Severity: wishlist X-Debbugs-Cc: cru...@debian.org Subject: ITP: subarch-select -- Select among binaries based upon x86 microarchitecture support Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: subarch-select Version : 0.1 Upstream Author

Bug#1037201: ITP: cwltest -- Common Workflow Language testing framework

2023-06-07 Thread Michael R. Crusoe
Package: wnpp Severity: wishlist X-Debbugs-Cc: cru...@debian.org Subject: ITP: cwltest -- Common Workflow Language testing framework Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: cwltest Version : 2.3.20230607140609 Upstream Author : CWL, a project

Bug#1034369: libcereal: autopkgtest regression on non x86: cc1plus: all warnings being treated as errors

2023-04-14 Thread Michael R. Crusoe
Control: forwarded -1 https://github.com/USCiLab/cereal/issues/787 I opened an issue upstream -- Michael R. Crusoe OpenPGP_signature Description: OpenPGP digital signature

Bug#1031192: toil: FTBFS (The job JobClass is requesting 2.0 cores)

2023-02-20 Thread Michael R. Crusoe
Thank you for the report. Please send me the entire log (as an attachment or link) so I can fix all the single-core test issues. -- Michael R. Crusoe OpenPGP_signature Description: OpenPGP digital signature

Bug#1025329: bullseye-pu: package cwltool/3.0.20210124104916-3+deb11u1

2023-01-02 Thread Michael R. Crusoe
Ah, thanks. I've fixed the metadata for #1025327. I've already uploaded cwltool/3.0.20210124104916-3+deb11u1 ; is there anything I can do? On Sat, Dec 24, 2022 at 1:02 PM Adam D. Barratt wrote: > On Fri, 2022-12-02 at 16:33 +0100, Michael R. Crusoe wrote: > > cwltool is not usabl

Bug#1024911: change in the extention importation with 3.11

2022-12-23 Thread Michael R. Crusoe
> boost-python 1.81.0 has a fix for this, though it was not mentioned in their release notes https://github.com/boostorg/python/commit/a218babc8daee904a83f550fb66e5cb3f1cb3013 Conda backported this to boost-python 1.78, so hopefully backporting to Debian's 1.74 is equally simple https://github.com/conda-forge/boost-feedstock/pull/156/files -- Michael R. Crusoe OpenPGP_signature Description: OpenPGP digital signature

Bug#1025329: bullseye-pu: package cwltool/3.0.20210124104916-3+deb11u1

2022-12-02 Thread Michael R. Crusoe
/debian/changelog 2021-01-25 10:36:01.0 +0100 +++ cwltool-3.0.20210124104916/debian/changelog 2022-12-02 16:06:31.0 +0100 @@ -1,3 +1,9 @@ +cwltool (3.0.20210124104916-3+deb11u1) bullseye; urgency=medium + + * debian/control: cwltool needs python3-distutils + + -- Michael R. Crusoe

Bug#1025327: ImportError: cannot import name 'spawn' from 'distutils' (/usr/lib/python3.9/distutils/__init__.py)

2022-12-02 Thread Michael R. Crusoe
@@ -1,3 +1,9 @@ +cwltool (3.0.20210124104916-3+deb11u1) bullseye; urgency=medium + + * debian/control: cwltool needs python3-distutils + + -- Michael R. Crusoe Fri, 02 Dec 2022 16:06:31 +0100 + cwltool (3.0.20210124104916-3) unstable; urgency=high * debian/control: this version of cwltool

Bug#1024235: python3-nose: nose doesn't work with Python 3.11 due to use of removed inspect.getargspec()

2022-11-16 Thread Michael R. Crusoe
Package: python3-nose Version: 1.3.7-8 Severity: serious Tags: ftbfs patch upstream Justification: fails to build from source X-Debbugs-Cc: cru...@debian.org nose uses inspect.getargspec() which has been deprecated since Python 3.0 and was removed in Python 3.11. Its build-time tests thus fail

Bug#1012482: lowering the severity (was Re: rdflib: URLInputSource can be abused to retrieve arbitrary documents if used naïvely)

2022-11-08 Thread Michael R. Crusoe
control: severity -1 important No reason to kick out all these packages at this time -- Michael R. Crusoe OpenPGP_signature Description: OpenPGP digital signature

Bug#1023322: ITP: seqan-needle -- pre-filter for the counting of very large collections of nucleotide sequences

2022-11-02 Thread Michael R. Crusoe
Package: wnpp Severity: wishlist X-Debbugs-Cc: cru...@debian.org Subject: ITP: seqan-needle -- pre-filter for the counting of very large collections of nucleotide sequences Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: seqan-needle Version : 1.0.1.0.0

Bug#1022057: ITP: seqan-raptor -- pre-filter for querying very large collections of nucleotide sequences

2022-10-19 Thread Michael R. Crusoe
Package: wnpp Severity: wishlist X-Debbugs-Cc: cru...@debian.org Subject: ITP: seqan-raptor -- pre-filter for querying very large collections of nucleotide sequences Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: seqan-raptor Version : 2.0.0.0

Bug#1022044: ITP: pytest-httpserver -- HTTP server for pytest to test HTTP clients

2022-10-19 Thread Michael R. Crusoe
Package: wnpp Severity: wishlist X-Debbugs-Cc: cru...@debian.org Subject: ITP: pytest-httpserver -- HTTP server for pytest to test HTTP clients Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: pytest-httpserver Version : 1.0.6 Upstream Author : Zsolt

Bug#1021235: python-pymeasure: please switch to QtWidgets.QTreeWidgetItem

2022-10-06 Thread Michael R. Crusoe
reaking your package in sid, I didn't know there was this reverse-dependency when I uploaded. Hello Gianfranco, Can you send us a merge request with those patches applied? https://salsa.debian.org/science-team/python-pymeasure/-/merge_requests Thanks, Michael R. Crusoe

Bug#1021059: RM: python-types-toml -- ROM; Package taken over by python3-typeshed

2022-10-01 Thread Michael R. Crusoe
Package: ftp.debian.org Severity: normal X-Debbugs-Cc: cru...@debian.org The contents of python3-types-toml is now provided by python3-typeshed. Thanks,

Bug#1021058: RM: python-types-typed-ast -- ROM; Taken over by python3-typeshed

2022-10-01 Thread Michael R. Crusoe
Package: ftp.debian.org Severity: normal X-Debbugs-Cc: cru...@debian.org The contents of python3-types-typed-ast is now provided by python3-typeshed, Thanks,

Bug#1019705: python-cachecontrol: release 0.12.12 was yanked from PyPI

2022-09-13 Thread Michael R. Crusoe
Source: python-cachecontrol Version: 0.12.12-1 Severity: important X-Debbugs-Cc: cru...@debian.org https://pypi.org/project/CacheControl/0.12.12/ There should be a 0.13 with the lockfile → filelock changed dependency. https://github.com/ionrock/cachecontrol/issues/286 -- Michael R. Crusoe

Bug#1018887: ITP: cwl-utils -- Python Utilities and Autogenerated Classes for CWL v1.0 - v1.2

2022-09-01 Thread Michael R. Crusoe
Package: wnpp Severity: wishlist X-Debbugs-Cc: cru...@debian.org Subject: ITP: cwl-utils -- Python Utilities and Autogenerated Classes for CWL v1.0 - v1.2 Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: cwl-utils Version : 0.16 Upstream Author

Bug#945748: xboxdrv: Python2 removal in sid/bullseye

2022-08-27 Thread Michael R. Crusoe
Here's upstream's unreleased fix for Python3, which works for me https://gitlab.com/xboxdrv/xboxdrv/-/commit/3ca002d783974539f5be4e683b67a58f4cc9fce0 -- Michael R. Crusoe OpenPGP_signature Description: OpenPGP digital signature

Bug#1003961: ITP: cwl-upgrader -- Common Workflow Language standalone document upgrader

2022-01-25 Thread Michael R. Crusoe
This package will be maintained in the collaborative Debian section of Salsa. Dear Jonas, Thank you for your ITP! I'm the upstream maintainer; also of cwltool, toil, python-schema-salad. Feel free to add me as a co-maintainer. If you are open to team maintenance, may I suggest Debian Science

Bug#1003567: Please make a separate package for mistune 2.x

2022-01-24 Thread Michael R. Crusoe
se-dependencies). I'll raise the severity of this bug > approximately a month before making such an upload. Since Mistune 2.0.0 regresses its support for standard markdown, I ask that a separate package be made for mistune 2.x to give more time for mistune 0.8.x users to migrate to m

Bug#1003977: cwltool: privacy leak with option --print-doc

2022-01-19 Thread Michael R. Crusoe
s own choice. Jonas -- Michael R. Crusoe OpenPGP_signature Description: OpenPGP digital signature

Bug#1001591: python3-mistune: latest upgrade breaks matrix-mirage package

2021-12-25 Thread Michael R. Crusoe
Maybe mistune 2.x should have its own package? Or keep python3-mistune at 2.x and introduce a python3-mistune1 package? I'm upstream for schema-salad, we don't know how to upgrade to 2.x because so much has been broken and there is no upgrading guide.

Bug#1002326: python-schema-salad: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.10 3.9" returned exit code 13

2021-12-25 Thread Michael R. Crusoe
On Wed, 22 Dec 2021 08:57:03 +0100 Lucas Nussbaum wrote: > Source: python-schema-salad > Version: 8.2.20211104054942-1 > Severity: serious > Justification: FTBFS > Tags: bookworm sid ftbfs > User: lu...@debian.org > Usertags: ftbfs-20211220 ftbfs-bookworm > > Hi, > > During a rebuild of all

Bug#997289: range-v3: diff for NMU version 0.11.0-1.1

2021-11-13 Thread Michael R . Crusoe
/changelog2021-11-13 11:26:59.0 +0100 @@ -1,3 +1,10 @@ +range-v3 (0.11.0-1.1) unstable; urgency=high + + * Non-maintainer upload. + * Apply suggested fix for gcc 11.2. Closes: #997289. + + -- Michael R. Crusoe Sat, 13 Nov 2021 11:26:59 +0100 + range-v3 (0.11.0-1) unstable; urgency

Bug#997018: RM: rust-elfx86exts [armhf i386 mips64el mipsel ppc64el s390x] -- ROM; Only {amd,arm}64 for now

2021-10-22 Thread Michael R. Crusoe
Package: ftp.debian.org Severity: normal X-Debbugs-Cc: cru...@debian.org Thanks!

Bug#994443: [R-pkg-team] Bug#994443: marked as done (r-bioc-deseq2: autopkgtest regression)

2021-10-22 Thread Michael R. Crusoe
package r-bioc-tximportdata does not exist in stable. -- Michael R. Crusoe

Bug#997017: RM: rust-capstone [armel armhf i386 mips64el mipsel ppc64el s390x] -- ROM; Only {amd,arm}64 for now

2021-10-22 Thread Michael R. Crusoe
Package: ftp.debian.org Severity: normal X-Debbugs-Cc: cru...@debian.org When we update to newer versions later I'll restore the other archs.

Bug#995675: python3-rdflib: new upstream release 6.0.0 (and 6.0.1)

2021-10-16 Thread Michael R. Crusoe
of ontospy. I can upload the new version to experimental, if someone wants to volunteer a testing rebuild of all the reverse (build) dependencies so we can get a sense of how hard the transition will be. -- Michael R. Crusoe

Bug#983988: benchmark: ftbfs with GCC-11

2021-10-13 Thread Michael R. Crusoe
an work for you, Anton? -- Michael R. Crusoe OpenPGP_signature Description: OpenPGP digital signature

Bug#995934: python-gevent: diff for NMU version 20.9.0-2.1

2021-10-08 Thread Michael R . Crusoe
s: #995138, #994354 + * debian/patches/drop_mysphinxext: cherry-picked from upstream, fixes a +FTBFS. + + -- Michael R. Crusoe Fri, 08 Oct 2021 13:32:45 +0200 + python-gevent (20.9.0-2) unstable; urgency=medium * Fix dh_installdocs invocation in arch target (closes: #983825). diff -Nru pyt

Bug#994830: ITP: python-types-dataclasses -- Typing stubs for dataclasses

2021-09-21 Thread Michael R. Crusoe
Package: wnpp Severity: wishlist X-Debbugs-Cc: cru...@debian.org Subject: ITP: python-types-dataclasses -- Typing stubs for dataclasses Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: python-types-dataclasses Version : 0.1.7 Upstream Author : Gary van

Bug#994599: ITP: python-tomli -- lil' TOML parser for Python

2021-09-18 Thread Michael R. Crusoe
Package: wnpp Severity: wishlist X-Debbugs-Cc: cru...@debian.org Subject: ITP: python-tomli -- lil' TOML parser for Python Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: python-tomli Version : 1.2.1 Upstream Author : Taneli Hukkinen * URL

Bug#994589: flit: New version upstream (3.3), 3.2+ needed for python-tomli (needed by next version of mypy)

2021-09-18 Thread Michael R. Crusoe
ta table from PEP 621. https://flit.readthedocs.io/en/latest/history.html Do you have plans on updating flit soon? Can I assist? Thanks! -- Michael R. Crusoe

Bug#994404: ITP: python-types-typed-ast -- Typing stubs for typed-ast

2021-09-15 Thread Michael R. Crusoe
Package: wnpp Severity: wishlist X-Debbugs-Cc: cru...@debian.org Subject: ITP: python-types-typed-ast -- Typing stubs for typed-ast Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: python-types-typed-ast Version : 1.4.4 Upstream Author : * URL

Bug#994403: ITP: python-types-toml -- Typing stubs for toml

2021-09-15 Thread Michael R. Crusoe
Package: wnpp Severity: wishlist X-Debbugs-Cc: cru...@debian.org Subject: ITP: python-types-toml -- Typing stubs for toml Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: python-types-toml Version : 0.1.5 Upstream Author : * URL : https

Bug#982139: Fixed upstream

2021-08-27 Thread Michael R. Crusoe
https://github.com/torognes/vsearch/commit/20800906fc384324bba9a5f975aa125906c325be -- Michael R. Crusoe

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