Bug#1023731: Any idea why debci picks old versions (Was: Bug#1023731: BioC Transition blocked by new dependencies)

2022-11-28 Thread Andreas Tille
Hi Paul, Am Mon, Nov 28, 2022 at 08:23:12PM +0100 schrieb Paul Gevers: > > I'm constantly checking the tracker page of r-bioc-biocgenerics[1] to > > follow the transition status. I realised that debci picks old, not yet > > fixed package versions like: > > > >

Bug#1023731: Any idea why debci picks old versions (Was: Bug#1023731: BioC Transition blocked by new dependencies)

2022-11-28 Thread Paul Gevers
Hi Andreas, On 28-11-2022 13:22, Andreas Tille wrote: I'm constantly checking the tracker page of r-bioc-biocgenerics[1] to follow the transition status. I realised that debci picks old, not yet fixed package versions like: r-bioc-biocfilecache/2.4.0+dfsg-1 while 2.4.0+dfsg-2 is in

Bug#1023731: Any idea why debci picks old versions (Was: Bug#1023731: BioC Transition blocked by new dependencies)

2022-11-28 Thread Andreas Tille
Hi, I'm constantly checking the tracker page of r-bioc-biocgenerics[1] to follow the transition status. I realised that debci picks old, not yet fixed package versions like: r-bioc-biocfilecache/2.4.0+dfsg-1 while 2.4.0+dfsg-2 is in unstable r-bioc-biocsingular/1.12.0+ds-1 while

Bug#1023731: BioC Transition blocked by new dependencies

2022-11-24 Thread Andreas Tille
Am Thu, Nov 24, 2022 at 08:46:31AM +0100 schrieb Sebastian Ramacher: > > >r-bioc-bitseq - should be removed from testing immediately bug just > > > filed) Bug #1024661 > > >r-bioc-multiassayexperiment #1024748 > > >r-bioc-demixt (bug #1024597 was just filed) > > >r-bioc-scater

Bug#1023731: BioC Transition blocked by new dependencies

2022-11-23 Thread Sebastian Ramacher
On 2022-11-24 07:52:37 +0100, Andreas Tille wrote: > Am Tue, Nov 22, 2022 at 08:54:13PM +0100 schrieb Andreas Tille: > > If I understood that BioConductor packages should not block other > > transitions. I've just pinged ftpmaster on IRC to check packages > > r-bioc-bsseq, r-bioc-dss,

Bug#1023731: BioC Transition blocked by new dependencies

2022-11-23 Thread Andreas Tille
Am Tue, Nov 22, 2022 at 08:54:13PM +0100 schrieb Andreas Tille: > If I understood that BioConductor packages should not block other > transitions. I've just pinged ftpmaster on IRC to check packages > r-bioc-bsseq, r-bioc-dss, r-bioc-biocbaseutils and r-cran-ggrastr. > The following packages are

Bug#1023731: BioC Transition blocked by new dependencies

2022-11-22 Thread Andreas Tille
Control: block -1 by 1024582 Am Mon, Nov 21, 2022 at 07:16:14PM +0100 schrieb Sebastian Ramacher: > > However, to make us understand your suggestion better: Is there any > > drawback on your side if the transition of a closed set of packages if > > the transition is delayed by new processing? >

Bug#1023731: BioC Transition blocked by new dependencies

2022-11-21 Thread Dylan Aïssi
Hi Nilesh, Le lun. 21 nov. 2022 à 18:29, Nilesh Patra a écrit : > > Lastly I also want to higlight that: while bioc transition is in theory a > transition (I agree) > but to my understanding, there is no _real_ API change. It is just the tool > taking the > API field from DESCRIPTION file into

Bug#1023731: BioC Transition blocked by new dependencies

2022-11-21 Thread Sebastian Ramacher
On 2022-11-21 16:39:26 +0100, Andreas Tille wrote: > Hi Sebastian, > > Am Mon, Nov 21, 2022 at 03:05:26PM +0100 schrieb Sebastian Ramacher: > > On 2022-11-21 15:02:16 +0100, Andreas Tille wrote: > > > Control: block -1 by 1024563 > > > Control: block -1 by 1024565 > > > Control: block -1 by

Bug#1023731: BioC Transition blocked by new dependencies

2022-11-21 Thread Nilesh Patra
On Mon, Nov 21, 2022 at 06:11:41PM +0100, Andreas Tille wrote: > Hi Adrian and others, > > Am Mon, Nov 21, 2022 at 06:33:52PM +0200 schrieb Adrian Bunk: > > > This is really hard to do, thought. The new packages are needing those > > > packages from the transition. I actually injected two

Bug#1023731: BioC Transition blocked by new dependencies

2022-11-21 Thread Andreas Tille
Hi Adrian and others, Am Mon, Nov 21, 2022 at 06:33:52PM +0200 schrieb Adrian Bunk: > > This is really hard to do, thought. The new packages are needing those > > packages from the transition. I actually injected two packages from > > higher levels manually to be able to build one of the new

Bug#1023731: BioC Transition blocked by new dependencies

2022-11-21 Thread Adrian Bunk
On Mon, Nov 21, 2022 at 04:39:26PM +0100, Andreas Tille wrote: >... > Am Mon, Nov 21, 2022 at 03:05:26PM +0100 schrieb Sebastian Ramacher: > > On 2022-11-21 15:02:16 +0100, Andreas Tille wrote: > > > Control: block -1 by 1024563 > > > Control: block -1 by 1024565 > > > Control: block -1 by 1024567

Bug#1023731: BioC Transition blocked by new dependencies

2022-11-21 Thread Sebastiaan Couwenberg
On 11/21/22 17:21, Andreas Tille wrote: Am Mon, Nov 21, 2022 at 04:49:43PM +0100 schrieb Sebastiaan Couwenberg: This is really hard to do, thought. The new packages are needing those packages from the transition. I actually injected two packages from higher levels manually to be able to build

Bug#1023731: BioC Transition blocked by new dependencies

2022-11-21 Thread Andreas Tille
Am Mon, Nov 21, 2022 at 04:49:43PM +0100 schrieb Sebastiaan Couwenberg: > > This is really hard to do, thought. The new packages are needing those > > packages from the transition. I actually injected two packages from > > higher levels manually to be able to build one of the new packages. So >

Bug#1023731: BioC Transition blocked by new dependencies

2022-11-21 Thread Sebastiaan Couwenberg
On 11/21/22 16:39, Andreas Tille wrote: Am Mon, Nov 21, 2022 at 03:05:26PM +0100 schrieb Sebastian Ramacher: On 2022-11-21 15:02:16 +0100, Andreas Tille wrote: Some of the BioConductor packages need new dependencies. I have pushed these to new queue and set the ITP bugs as blocker. As this

Bug#1023731: BioC Transition blocked by new dependencies

2022-11-21 Thread Dirk Eddelbuettel
On 21 November 2022 at 16:39, Andreas Tille wrote: | Am Mon, Nov 21, 2022 at 03:05:26PM +0100 schrieb Sebastian Ramacher: | > On 2022-11-21 15:02:16 +0100, Andreas Tille wrote: | > > Some of the BioConductor packages need new dependencies. | > > I have pushed these to new queue and set the ITP

Bug#1023731: BioC Transition blocked by new dependencies

2022-11-21 Thread Andreas Tille
Hi Sebastian, Am Mon, Nov 21, 2022 at 03:05:26PM +0100 schrieb Sebastian Ramacher: > On 2022-11-21 15:02:16 +0100, Andreas Tille wrote: > > Control: block -1 by 1024563 > > Control: block -1 by 1024565 > > Control: block -1 by 1024567 > > > > Some of the BioConductor packages need new

Bug#1023731: BioC Transition blocked by new dependencies

2022-11-21 Thread Sebastian Ramacher
On 2022-11-21 15:02:16 +0100, Andreas Tille wrote: > Control: block -1 by 1024563 > Control: block -1 by 1024565 > Control: block -1 by 1024567 > > Some of the BioConductor packages need new dependencies. > I have pushed these to new queue and set the ITP bugs as > blocker. As this is happening

Bug#1023731: BioC Transition blocked by new dependencies

2022-11-21 Thread Andreas Tille
Control: block -1 by 1024563 Control: block -1 by 1024565 Control: block -1 by 1024567 Some of the BioConductor packages need new dependencies. I have pushed these to new queue and set the ITP bugs as blocker. Kind regards Andreas. -- http://fam-tille.de