Bug#969608: [Debian-med-packaging] Bug#969608: makeblastdb 2.10.x on 32-bit architectures

2020-09-15 Thread Aaron M. Ucko
Étienne Mollier writes: > Wow, thanks for the comprehensive background information. In No problem. > case someone else (me in a not so near future for instance) > stumbles upon this again, I keep note that reducing the size of > BLASTDB_LMDB_MAP_SIZE a bit might help: One final

Bug#969608: [Debian-med-packaging] Bug#969608: makeblastdb 2.10.x on 32-bit architectures

2020-09-15 Thread Étienne Mollier
Hi Aaron, Aaron M. Ucko, on 2020-09-14 17:36:14 -0400: > > Thanks for clarifying. AFAICT, this environment imposes a tighter limit > than native arm64 hardware, and versions 2.10.0-1 and 2.10.0-3 both hit > it. Rough bisection via the BLASTDB_LMDB_MAP_SIZE environment variable > gives an

Bug#969608: makeblastdb 2.10.x on 32-bit architectures

2020-09-14 Thread Aaron M. Ucko
Étienne Mollier writes: > I worked within an arm64 schroot built with sbuild-createchroot, > on a native amd64 machine. Thanks for clarifying. AFAICT, this environment imposes a tighter limit than native arm64 hardware, and versions 2.10.0-1 and 2.10.0-3 both hit it. Rough bisection via the

Bug#969608: makeblastdb 2.10.x on 32-bit architectures

2020-09-14 Thread Étienne Mollier
Hi Aaron, Aaron M. Ucko, on 2020-09-13 22:44:00 -0400: > Étienne Mollier writes: > > > regression looks still there in version 2.10.0-3, at least on > > arm64 architecture. > > How can I reproduce it? I worked within an arm64 schroot built with sbuild-createchroot, on a native amd64 machine.

Bug#969608: makeblastdb 2.10.x on 32-bit architectures

2020-09-13 Thread Aaron M. Ucko
Étienne Mollier writes: > regression looks still there in version 2.10.0-3, at least on > arm64 architecture. How can I reproduce it? AFAICT python-biopython's autopkgtest boils down to the upstream test suite, which runs fine as part of a build of revision 15084ca (immediately preceding your

Bug#969608: makeblastdb 2.10.x on 32-bit architectures

2020-09-13 Thread Étienne Mollier
Control: tag -1 reopen Greetings, Étienne Mollier, on 2020-09-08 21:10:18 +0200: > Aaron M. Ucko, on 2020-09-07 21:55:45 -0400: > > Étienne Mollier writes: > > > Thanks for your work on this topic. I attempted to remove the > > > patches to address #960756 in Biopython. While the problem is >