Your message dated Tue, 26 Dec 2023 08:22:46 +0200
with message-id
<CAM8zJQv2P2w-dun-69cNQE6LY2r=m=cyjexhtbveqofdz3m...@mail.gmail.com>
and subject line macs ftbfs with Python 3.12
has caused the Debian Bug report #1057840,
regarding macs ftbfs with Python 3.12
to be marked as done.
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--
1057840: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1057840
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: src:macs
Version:
Severity: important
Tags: sid trixie
User: debian-pyt...@lists.debian.org
Usertags: python3.12
macs ftbfs with Python 3.12 (note that also cython 3.0.5 was used)
[...]
dh_auto_configure -O--buildsystem=pybuild
I: pybuild base:310: python3.12 setup.py config
Error compiling Cython file:
------------------------------------------------------------
...
crick_right = right_sum(crick, search_start, window_size)
wtd_list = np.zeros( search_end - search_start + 1, dtype="float32")
i = 0
for j in range(search_start, search_end+1):
wtd_list[i] = max((2 * (watson_left * crick_right)**0.5 -
watson_right - crick_left),0) # minimum score is 0
^
------------------------------------------------------------
MACS2/IO/CallPeakUnit.pyx:200:93: complex types are unordered
Compiling MACS2/Prob.pyx because it changed.
Compiling MACS2/IO/Parser.pyx because it changed.
Compiling MACS2/Pileup.pyx because it changed.
Compiling MACS2/PeakModel.pyx because it changed.
Compiling MACS2/PeakDetect.pyx because it changed.
Compiling MACS2/Signal.pyx because it changed.
Compiling MACS2/IO/PeakIO.pyx because it changed.
Compiling MACS2/IO/BedGraphIO.pyx because it changed.
Compiling MACS2/IO/FixWidthTrack.pyx because it changed.
Compiling MACS2/IO/PairedEndTrack.pyx because it changed.
Compiling MACS2/IO/BedGraph.pyx because it changed.
Compiling MACS2/IO/ScoreTrack.pyx because it changed.
Compiling MACS2/IO/CallPeakUnit.pyx because it changed.
[ 1/13] Cythonizing MACS2/IO/BedGraph.pyx
[ 2/13] Cythonizing MACS2/IO/BedGraphIO.pyx
[ 3/13] Cythonizing MACS2/IO/CallPeakUnit.pyx
Traceback (most recent call last):
File "/<<PKGBUILDDIR>>/setup.py", line 102, in <module>
main()
File "/<<PKGBUILDDIR>>/setup.py", line 98, in main
ext_modules = cythonize( ext_modules ),
^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3/dist-packages/Cython/Build/Dependencies.py",
line 1154, in cythonize
cythonize_one(*args)
File "/usr/lib/python3/dist-packages/Cython/Build/Dependencies.py",
line 1321, in cythonize_one
raise CompileError(None, pyx_file)
Cython.Compiler.Errors.CompileError: MACS2/IO/CallPeakUnit.pyx
E: pybuild pybuild:395: configure: plugin distutils failed with: exit
code=1: python3.12 setup.py config
dh_auto_configure: error: pybuild --configure -i python{version} -p
"3.12 3.11" returned exit code 13
make: *** [debian/rules:14: binary] Error 25
--- End Message ---
--- Begin Message ---
Version: 0.29.36-3.1
macs 2.2.9.1-1+b1 built successfully with cython3 0.29.36-3.1.
The build failure with cython 3.0.x is #1056813.
--- End Message ---
