Accepted biojava4-live 4.2.4+dfsg-1 (source all) into unstable

Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: libbiojava4-java - Java API to biological data and applications (default version) libbiojava4-java-doc - [Biology] Documentation for BioJava libbiojava4.0-jav

Accepted ncbi-blast+ 2.5.0-1 (source all amd64) into unstable

med-packag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: ncbi-blast+ - next generation suite of BLAST sequence search tools ncbi-blast+-legacy - NCBI Blast legacy call script Changes: ncbi-blast+ (2.5.0-1) unstable; urgency=medium . * New upst

Accepted biomaj 1.2.3-10 (source all) into unstable

kag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: biomaj - biological data-bank updater biomaj-properties - biological data-bank updater - example properties files Changes: biomaj (1.2.3-10) unstable; urgency=medium . * Patch biomajlogger to match

Accepted cassiopee 1.0.5-1 (source amd64 all) into unstable

Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: cassiopee - index and search tool in genomic sequences libcassie-dev - library and headers for development libcassie-doc - documentation for cassiopee library libcassie1

Accepted logol 1.7.5-1 (source amd64 all) into unstable

kag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: logol - Pattern matching tool using Logol language logol-bin - Pattern matching tool using Logol language Changes: logol (1.7.5-1) unstable; urgency=medium . * New upstream release Ch

Accepted igv 2.3.81+dfsg-1 (source all) into unstable

org> Changed-By: Olivier Sallou <osal...@debian.org> Description: igv- Integrative Genomics Viewer Changes: igv (2.3.81+dfsg-1) unstable; urgency=medium . * New upstream release 2.3.81+dfsg Checksums-Sha1: 6546ff43e8ffaf8db6be8778fc34f0b76718ae9f 2498 igv_2.3.8

Accepted python-cutadapt 1.11-1 (source all amd64) into unstable

<debian-med-packag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: cutadapt - Clean biological sequences from high-throughput sequencing reads python-cutadapt - Clean biological sequences from high-throughput sequencing reads python3-cuta

Accepted ngs-sdk 1.2.5-1 (source amd64) into unstable

Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: libngs-java - Next Generation Sequencing language Bindings (Java bindings) libngs-sdk-dev - Next Generation Sequencing language Bindings (development) libngs-sdk1 - Nex

Accepted python-dictobj 0.4-1 (source amd64) into unstable, unstable

med-packag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: python-dictobj - Dictionary where keys can be accessed as instance attributes python3-dictobj - Dictionary where keys can be accessed as instance attributes Closes: 829565 Changes: python-di

Bug#829565: ITP: python-dictobj -- python library to access dictionary keys as instance attributes

Package: wnpp Severity: wishlist Owner: Olivier Sallou <olivier.sal...@irisa.fr> * Package name: python-dictobj Version : 0.4 Upstream Author : William Grim * URL : https://github.com/grimwm/py-dictobj * License : Apache 2.0 Programming Lang:

Accepted bytecode 0.92.svn.20090106-2 (source all) into unstable

ava-maintain...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: libbytecode-java - Java bytecode manipulation library libbytecode-java-doc - Documentation for the API of the Java bytecode library Closes: 817385 Changes: bytecode (0.92.svn.20090106

Accepted biomaj 1.2.3-9 (source all) into unstable

kag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: biomaj - biological data-bank updater biomaj-properties - biological data-bank updater - example properties files Closes: 825046 Changes: biomaj (1.2.3-9) unstable; urgency=medium . * Add Brazilia

Accepted biomaj 1.2.3-8 (source all) into unstable

kag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: biomaj - biological data-bank updater biomaj-properties - biological data-bank updater - example properties files Closes: 826903 Changes: biomaj (1.2.3-8) unstable; urgency=medium . * Allow mysql ski

Accepted biomaj-watcher 1.2.2-3 (source all) into unstable

kag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: biomaj-watcher - biological data-bank updater - web interface Changes: biomaj-watcher (1.2.2-3) unstable; urgency=medium . * Add Turkish translation (Thanks to Mert Dirik <mertdi...@gmail.com)

Accepted libchado-perl 1.31-1 (source all) into unstable

kag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: chado-utils - tools to add/extract data from Chado libchado-perl - database schema and tools for genomic data Changes: libchado-perl (1.31-1) unstable; urgency=medium . * New upstream release Ch

Accepted logol 1.7.4-1 (source amd64 all) into unstable

kag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: logol - Pattern matching tool using Logol language logol-bin - Pattern matching tool using Logol language Changes: logol (1.7.4-1) unstable; urgency=medium . * New upstream release Ch

Accepted cassiopee 1.0.4+dfsg-1 (source amd64 all) into unstable

Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: cassiopee - index and search tool in genomic sequences libcassie-dev - library and headers for development libcassie-doc - documentation for cassiopee library

Accepted ngs-sdk 1.2.3-1 (source amd64) into unstable, unstable

Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: libngs-java - Next Generation Sequencing language Bindings (Java bindings) libngs-sdk-dev - Next Generation Sequencing language Bindings (development) libngs-sdk1 - Nex

Accepted circos-tools 0.21-1 (source all) into unstable

kag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: circos-tools - plotter for visualizing data - helper utilities Changes: circos-tools (0.21-1) unstable; urgency=medium . * New upstream version Checksums-Sha1: 66845e3f6c763c83fddb7d53a7804a8355019ba9 1999 circo

Accepted circos 0.69-1 (source all) into unstable

ian-med-packag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: circos - plotter for visualizing data fonts-circos-symbols - plotter for visualizing data - standard fonts otf-symbols-circos - transitional dummy package Changes: circos (0.69

Accepted ncbi-blast+ 2.2.31-2 (source all amd64) into unstable

med-packag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: ncbi-blast+ - next generation suite of BLAST sequence search tools ncbi-blast+-legacy - NCBI Blast legacy call script Changes: ncbi-blast+ (2.2.31-2) unstable; urgency=medium . * Fix a l

Accepted python-cutadapt 1.9.1-1 (source amd64) into unstable

med-packag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: python-cutadapt - Clean biological sequences from high-throughput sequencing reads python3-cutadapt - Clean biological sequences from high-throughput sequencing reads Changes: python-cut

Accepted ncbi-blast+ 2.2.31-1 (source all amd64) into unstable

med-packag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: ncbi-blast+ - next generation suite of BLAST sequence search tools ncbi-blast+-legacy - NCBI Blast legacy call script Closes: 793263 798277 Changes: ncbi-blast+ (2.2.31-1) unstable; ur

Accepted repeatmasker-recon 1.08-1 (source amd64) into unstable, unstable

kag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: repeatmasker-recon - finds repeat families from biological sequences Closes: 796487 Changes: repeatmasker-recon (1.08-1) unstable; urgency=low . * Initial release (Closes: # 796487) Ch

Accepted bio-rainbow 2.0.4-1 (source amd64) into unstable, unstable

kag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: bio-rainbow - clustering and assembling short reads for bioinformatics Closes: 795865 Changes: bio-rainbow (2.0.4-1) unstable; urgency=low . * Initial release (Closes: #795865) Ch

Accepted biomaj 1.2.3-6 (source all) into unstable

kag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: biomaj - biological data-bank updater biomaj-properties - biological data-bank updater - example properties files Closes: 800985 Changes: biomaj (1.2.3-6) unstable; urgency=medium . * Replac

Accepted biomaj 1.2.3-5 (source all) into unstable

kag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: biomaj - biological data-bank updater biomaj-properties - biological data-bank updater - example properties files Closes: 800767 Changes: biomaj (1.2.3-5) unstable; urgency=medium . * Replace libcommo

Accepted python-cutadapt 1.8.3-1 (source amd64) into unstable, unstable

med-packag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: python-cutadapt - Clean biological sequences from high-throughput sequencing reads python3-cutadapt - Clean biological sequences from high-throughput sequencing reads Closes: 795822 Chan

Accepted python-fitbit 0.1.3-2 (source all) into unstable

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: python-fitbit - FitBit REST API Client Implementation Closes: 796538 Changes: python-fitbit (0.1.3-2) unstable; urgency=medium . * Replace tox by nose to avoid creating a virtualenv and downloading remote data (Closes

Bug#796487: ITP: repeatmasker-recon -- indentification of repeat families from biological sequences

Package: wnpp Severity: wishlist Owner: Olivier Sallou osal...@debian.org * Package name: repeatmasker-recon Version : 1.08 Upstream Author : Institute for Systems Biology * URL : http://www.repeatmasker.org/ * License : GPL Programming Lang: C, Perl

Bug#796363: ITP: libsis-base-java -- supplies some utility classes needed for libraries like sis-jhdf5

Package: wnpp Severity: wishlist Owner: Olivier Sallou osal...@debian.org * Package name: libsis-base-java Version : 14.12.0 Upstream Author : ETH Zuerich, CISD * URL : https://wiki-bsse.ethz.ch/display/JHDF5/Download+Page * License : Apache Programming Lang

Bug#796390: ITP: libsis-jhdf5-java -- HDF library for Java

Package: wnpp Severity: wishlist Owner: Olivier Sallou osal...@debian.org * Package name: libsis-jhdf5-java Version : 14.12.1 Upstream Author : ETH Zuerich CISD * URL : http://svncisd.ethz.ch/repos/cisd/jhdf5/tags/release/ * License : Apache Programming Lang

Bug#796289: ITP: python-eta -- python module to generate progress bar for CLI

Package: wnpp Severity: wishlist Owner: Olivier Sallou osal...@debian.org * Package name: python-eta Version : 0.9.7 Upstream Author : Marcus Breese * URL : https://github.com/mbreese/eta * License : BSD Programming Lang: Python Description : python

Accepted biojava4-live 4.1.0+dfsg-3 (source all) into unstable

Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: libbiojava4-java - Java API to biological data and applications (default version) libbiojava4-java-doc - [Biology] Documentation for BioJava libbiojava4.0-java - Java API

Bug#795865: ITP: bio-rainbow -- RAD-seq related clustering and de novo assembly

Package: wnpp Severity: wishlist Owner: Olivier Sallou osal...@debian.org * Package name: bio-rainbow Version : 2.4.0 Upstream Author : Jue Ruan ruan...@gmail.com * URL : http://sourceforge.net/projects/bio-rainbow/ * License : GPL Programming Lang: C, Perl

Accepted biojava4-live 4.1.0+dfsg-2 (source all) into unstable

Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: libbiojava4-java - Java API to biological data and applications (default version) libbiojava4-java-doc - [Biology] Documentation for BioJava libbiojava4.0-java - Java API

Accepted biojava4-live 4.1.0+dfsg-1 (source all) into unstable

Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: libbiojava4-java - Java API to biological data and applications (default version) libbiojava4-java-doc - [Biology] Documentation for BioJava libbiojava4.0-java - Java API

Accepted figtree 1.4.2-1 (source all) into unstable

Changed-By: Olivier Sallou osal...@debian.org Description: figtree- graphical phylogenetic tree viewer Changes: figtree (1.4.2-1) unstable; urgency=medium . * New upstream release * d/control: use standards 3.9.6 Checksums-Sha1: f5b4c7e88946b888ac71d80f41435d3590e5c677 2321 figtree_1.4.2

Accepted biojava4-live 4.0.0+dfsg-1 (source all) into unstable, unstable

Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: libbiojava4-java - Java API to biological data and applications (default version) libbiojava4-java-doc - [Biology] Documentation for BioJava libbiojava4.0-java - Java API

Accepted logol 1.7.2-2 (source amd64 all) into unstable

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: logol - Pattern matching tool using Logol language logol-bin - Pattern matching tool using Logol language Closes: 790136 Changes: logol (1.7.2-2) unstable; urgency=medium . * d/patches/fix_swipl72: Fix swipl v7.x

Accepted bioperl 1.6.924-2 (source all) into unstable

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: bioperl- Perl tools for computational molecular biology libbio-perl-perl - BioPerl core perl modules Closes: 790305 Changes: bioperl (1.6.924-2) unstable; urgency=medium . * d/control: add perl-modules for perl

Accepted gbrowse 2.54+dfsg-5 (source amd64 all) into unstable

-med-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: gbrowse- GMOD Generic Genome Browser gbrowse-calign - CAlign helper gbrowse-data - Sample data to use GBrowse Closes: 789734 Changes: gbrowse (2.54+dfsg-5) unstable; urgency=medium . * d

Accepted libchado-perl 1.23-3 (source all) into unstable

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: chado-utils - tools to add/extract data from Chado libchado-perl - database schema and tools for genomic data Closes: 789114 Changes: libchado-perl (1.23-3) unstable; urgency=medium . * Add libmodule-build-perl

Accepted libbio-graphics-perl 2.39-3 (source all) into unstable

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: libbio-graphics-perl - Generate GD images of Bio::Seq objects Closes: 789063 Changes: libbio-graphics-perl (2.39-3) unstable; urgency=medium . * Add libmodule-build-perl dep (Closes: #789063). Checksums-Sha1

Accepted gbrowse 2.54+dfsg-4 (source amd64 all) into unstable

-med-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: gbrowse- GMOD Generic Genome Browser gbrowse-calign - CAlign helper gbrowse-data - Sample data to use GBrowse Closes: 788642 Changes: gbrowse (2.54+dfsg-4) unstable; urgency=medium . * d

Accepted cassiopee 1.0.3+dfsg-2 (source amd64 all) into unstable

Team debian-med-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: cassiopee - index and search tool in genomic sequences libcassie-dev - library and headers for development libcassie-doc - documentation for cassiopee library libcassie1 - library

Accepted ncbi-blast+ 2.2.30-3 (source amd64 all) into unstable

-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: ncbi-blast+ - next generation suite of BLAST sequence search tools ncbi-blast+-legacy - NCBI Blast legacy call script Changes: ncbi-blast+ (2.2.30-3) unstable; urgency=medium . * Switch to unstable

Re: Bug#783833: ITP: python-obitools -- set of programs specifically designed for analyzing NGS data in a DNA metabarcoding contex

Le jeu. 30 avr. 2015 à 23:57, Ben Hutchings b...@decadent.org.uk a écrit : On Thu, 2015-04-30 at 16:23 +, olivier sallou wrote: [...] Nope, not yet. However, as I discussed with one guy of the team some time ago, I do not think there is any plan to go to python3. This is an academic

Bug#783833: ITP: python-obitools -- set of programs specifically designed for analyzing NGS data in a DNA metabarcoding contex

Package: wnpp Severity: wishlist Owner: Olivier Sallou osal...@debian.org * Package name: python-obitools Version : 1.1.16 Upstream Author : Eric Coissac * URL : http://metabarcoding.org//obitools/ * License : CeCILL-V2 Programming Lang: Python Description

Re: Bug#783833: ITP: python-obitools -- set of programs specifically designed for analyzing NGS data in a DNA metabarcoding contex

Le jeu. 30 avr. 2015 à 17:42, Scott Kitterman deb...@kitterman.com a écrit : On Thursday, April 30, 2015 05:13:03 PM Olivier Sallou wrote: Package: wnpp Severity: wishlist Owner: Olivier Sallou osal...@debian.org * Package name: python-obitools Version : 1.1.16

Accepted logol 1.7.2-1 (source all amd64) into unstable

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: logol - Pattern matching tool using Logol language logol-bin - Pattern matching tool using Logol language Changes: logol (1.7.2-1) unstable; urgency=medium . * New upstream release d/control: use Standars 3.9.6

Accepted cassiopee 1.0.3+dfsg-1 (source amd64 all) into unstable

Team debian-med-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: cassiopee - index and search tool in genomic sequences libcassie-dev - library and headers for development libcassie-doc - documentation for cassiopee library libcassie1 - library

Accepted cassiopee 1.0.2+dfsg-1 (source amd64 all) into unstable

Team debian-med-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: cassiopee - index and search tool in genomic sequences libcassie-dev - library and headers for development libcassie-doc - documentation for cassiopee library libcassie1 - library

Re: what's the difference between [s/i/m/l/k/n] ?

Sorry for quoting, sent from my phone. This impacts d/control only to use a different template. Do not forget it is a helper only. s/m... will only propose a different control schema/fields autofilled according to your choice. Olivier Le dim. 1 mars 2015 07:12, lumin cdlumin...@gmail.com a

Accepted logol 1.7.0-2 (source all amd64) into unstable

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: logol - Pattern matching tool using Logol language logol-bin - Pattern matching tool using Logol language Changes: logol (1.7.0-2) unstable; urgency=medium . * d/control,d/patches/remove_drmaa_support: Remove libdrmaa

Re: Any way to apply patch on some archs only?

Le Thu Jan 29 2015 at 9:58:18 AM, Paul Wise p...@debian.org a écrit : On Thu, Jan 29, 2015 at 4:16 PM, olivier sallou wrote: In my current case, I can apply on all archs if needed, but I wondered if there was an easy way, seems not... :-( Please post some details of the bug, the patch you

Re: Any way to apply patch on some archs only?

ease some cases. On Thu, Jan 29, 2015 at 5:26 PM, olivier sallou osal...@debian.org wrote: Hi I d like to know if it is posdible to apply a patch on some archs only. I have some FTBS on some archs for a package. I have a patch but I d like to apply it only on failings archs and keep original

Re: Any way to apply patch on some archs only?

Le Thu Jan 29 2015 at 9:11:08 AM, Raphael Hertzog hert...@debian.org a écrit : Hi, On Thu, 29 Jan 2015, olivier sallou wrote: I d like to know if it is posdible to apply a patch on some archs only. I have some FTBS on some archs for a package. I have a patch but I d like to apply it only

Fwd: Any way to apply patch on some archs only?

Forgot to CC the list -- Forwarded message - From: olivier sallou olivier.sal...@gmail.com Date: jeu. 29 janv. 2015 15:20 Subject: Re: Any way to apply patch on some archs only? To: Ian Jackson ijack...@chiark.greenend.org.uk Sorry for quoting, sent from my phone... Yes

Any way to apply patch on some archs only?

Hi I d like to know if it is posdible to apply a patch on some archs only. I have some FTBS on some archs for a package. I have a patch but I d like to apply it only on failings archs and keep original upstream code for others. Patches can indeed fix an issue but be less performant/optimal... I

Accepted biomaj-watcher 1.2.2-2 (source all) into unstable

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: biomaj-watcher - biological data-bank updater - web interface Closes: 769348 Changes: biomaj-watcher (1.2.2-2) unstable; urgency=medium . * Switch to Tomcat 8 (Closes: #769348). Checksums-Sha1

Accepted ncbi-blast+ 2.2.30-1 (source amd64 all) into experimental

-med-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: ncbi-blast+ - next generation suite of BLAST sequence search tools ncbi-blast+-legacy - NCBI Blast legacy call script Changes: ncbi-blast+ (2.2.30-1) experimental; urgency=medium . * New upstream

Accepted mobyle 1.5.3+dfsg-2 (source all amd64) into unstable

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: mobyle - Web portal that provides web forms for command-line software mobyle-utils - binary tools used by Mobyle Changes: mobyle (1.5.3+dfsg-2) unstable; urgency=medium . * d/control: set jing as Recommends

Re: Javascript trigger design

Le Fri Nov 28 2014 at 01:55:26, Tomas Pospisek t...@sourcepole.ch a écrit : Am 28.11.2014 um 00:04 schrieb Thomas Goirand: Hi, Web application have evolved into monsters that needs lots of javascript. It's very common that these javascript applications are collecting all the .js

Accepted discosnp 1.2.6-1 (source amd64) into unstable

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: discosnp - discovering Single Nucleotide Polymorphism from raw set(s) of rea Changes: discosnp (1.2.6-1) unstable; urgency=medium . * New upstream release Checksums-Sha1: 9f0c671b17417f9516d2c2b62782a53a3a14cd0e 2009

Accepted minia 1.6906-1 (source amd64) into unstable

Changed-By: Olivier Sallou osal...@debian.org Description: minia - short-read biological sequence assembler Changes: minia (1.6906-1) unstable; urgency=medium . * New upstream release $ d/patches: updates patches to new release Checksums-Sha1: 7ae0f410fc61439b325fc122f0b2fe2a0489a15c

Accepted circos-tools 0.20-1 (source all) into unstable

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: circos-tools - plotter for visualizing data - helper utilities Changes: circos-tools (0.20-1) unstable; urgency=medium . [ Andreas Tille ] * New upstream version * cme fix dpkg-control * debhelper 9 Checksums-Sha1

Accepted biojava3-live 3.1.0+dfsg-2 (source all) into unstable

Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: libbiojava3-java - Java API to biological data and applications (default version) libbiojava3-java-doc - [Biology] Documentation for BioJava libbiojava3.0-java - Java API

Packaging of web apps: bower, yeoman...

Hi, I'd like to know if some developper already packaged web apps using bower/yeoman. Those tools are more and more popular in web development to get web related libraries and , with Grunt, concatenate/minify/obscorate/... used libraries. The issue is, like npm, maven or other tools, they download

Accepted mapsembler2 2.2.3+dfsg-1 (source amd64) into unstable

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: mapsembler2 - bioinformatics targeted assembly software Closes: 765285 Changes: mapsembler2 (2.2.3+dfsg-1) unstable; urgency=medium . * New upstream release * Fix some compilation issues * Fix FTBS on non x86 (Closes

Accepted opennebula-context 4.8.1-1 (source all) into unstable

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: opennebula-context - contextualization package Changes: opennebula-context (4.8.1-1) unstable; urgency=medium . * New upstream release, fixes on network setup Checksums-Sha1

Accepted prodigal 2.60-1 (source amd64) into unstable, unstable

Changed-By: Olivier Sallou osal...@debian.org Description: prodigal - Microbial (bacterial and archaeal) gene finding program Closes: 756291 Changes: prodigal (2.60-1) unstable; urgency=low . * Initial release (Closes: #756291). Checksums-Sha1: 266afb824147faae924079a7894ae67be40616b2 1927

Accepted biojava3-live 3.1.0+dfsg-1 (source all) into unstable

Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: libbiojava3-java - Java API to biological data and applications (default version) libbiojava3-java-doc - [Biology] Documentation for BioJava libbiojava3.0-java - Java API

Accepted mapsembler2 2.2.1+dfsg-3 (source amd64) into unstable

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: mapsembler2 - bioinformatics targeted assembly software Closes: 758730 Changes: mapsembler2 (2.2.1+dfsg-3) unstable; urgency=medium . [Gilles Filippini p...@debian.org ] * Support hdf5 1.8.13 new packaging layout

Accepted mapsembler2 2.2.1+dfsg-2 (source amd64) into unstable

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: mapsembler2 - bioinformatics targeted assembly software Closes: 758648 Changes: mapsembler2 (2.2.1+dfsg-2) unstable; urgency=medium . * Fix kissreads file conflict with discoSnp (Closes: #758648). Checksums-Sha1

Accepted fastqc 0.11.2+dfsg-2 (source all) into unstable

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: fastqc - quality control for high throughput sequence data Closes: 756296 Changes: fastqc (0.11.2+dfsg-2) unstable; urgency=medium . * Fix Configuration dir loading (Closes: #756296). Files are in directroy /etc/fastqc

Accepted discosnp 1.2.3-1 (source amd64) into unstable

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: discosnp - discovering Single Nucleotide Polymorphism from raw set(s) of rea Changes: discosnp (1.2.3-1) unstable; urgency=medium . * New upstream release Checksums-Sha1: 5fbf7f7a90fb0cbad2586d3fa4ba3a31b3ddbb5a 1992

Accepted mapsembler2 2.2.1+dfsg-1 (source amd64) into unstable

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: mapsembler2 - bioinformatics targeted assembly software Changes: mapsembler2 (2.2.1+dfsg-1) unstable; urgency=medium . * New upstream release Change of license to AGPL-3 Checksums-Sha1

Accepted biojava3-live 3.0.8+dfsg-1 (source all) into unstable

Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: libbiojava3-java - Java API to biological data and applications (default version) libbiojava3-java-doc - [Biology] Documentation for BioJava libbiojava3.0-java - Java API

Bug#756291: (no subject)

Subject: ITP: prodigal -- microbial (bacterial and archaeal) gene finding program Package: wnpp Owner: Olivier Sallou olivier.sal...@irisa.fr Severity: wishlist * Package name: prodigal Version : 2.60 Upstream Author : Doug Hyatt * URL : http://prodigal.ornl.gov

Accepted gbrowse 2.54+dfsg-3 (source all amd64)

-med-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: gbrowse- GMOD Generic Genome Browser gbrowse-calign - CAlign helper gbrowse-data - Sample data to use GBrowse Closes: 752345 Changes: gbrowse (2.54+dfsg-3) unstable; urgency=medium . [ gregor

[VAC] 11 - 23 July

Hi, I won't be available/reachable during this period for package maintenance. In case of issue, the Debian Med team can manage my packages, thank you for forwarding the the debian-med mailng list. Olivier

Accepted libur-perl 0.430-1 (source all)

Changed-By: Olivier Sallou osal...@debian.org Description: libur-perl - object/relation mapper library Closes: 711637 Changes: libur-perl (0.430-1) unstable; urgency=medium . [ gregor herrmann ] * Strip trailing slash from metacpan URLs. . [ Olivier Sallou ] * New upstream release 0.430

Accepted ncbi-blast+ 2.2.29-2 (source amd64 all)

-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: ncbi-blast+ - next generation suite of BLAST sequence search tools ncbi-blast+-legacy - NCBI Blast legacy call script Closes: 753190 Changes: ncbi-blast+ (2.2.29-2) unstable; urgency=medium . * d

Accepted biomaj-watcher 1.2.2-1 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: biomaj-watcher - biological data-bank updater - web interface Closes: 742859 752223 Changes: biomaj-watcher (1.2.2-1) unstable; urgency=medium . * New usptream release: - remove generated GWT files from source (Closes

Accepted pycaptcha 0.4-2 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: python-captcha - collection of Python modules implementing CAPTCHAs Changes: pycaptcha (0.4-2) unstable; urgency=low . [ Jakub Wilk ] * Use canonical URIs for Vcs-* fields. . [ Hugo Lefeuvre ] * Use the last version

Accepted fastqc 0.11.2+dfsg-1 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: fastqc - quality control for high throughput sequence data Changes: fastqc (0.11.2+dfsg-1) unstable; urgency=medium . * New upstream release Checksums-Sha1: ee9f4e105b9e4b363604e6d85bd682037d512d1a 2155 fastqc_0.11.2+dfsg-1.dsc

Accepted ncbi-blast+ 2.2.29-1 (source amd64 all)

-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: ncbi-blast+ - next generation suite of BLAST sequence search tools ncbi-blast+-legacy - NCBI Blast legacy call script Changes: ncbi-blast+ (2.2.29-1) unstable; urgency=medium . * New upstream release

Accepted picard-tools 1.113-1 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: libsam-java - Java library to manipulate SAM and BAM files picard-tools - Command line tools to manipulate SAM and BAM files Changes: picard-tools (1.113-1) unstable; urgency=medium . * New upstream release 1.113

Accepted mapsembler2 2.1.6+dfsg-1 (source amd64)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: mapsembler2 - bioinformatics targeted assembly software Changes: mapsembler2 (2.1.6+dfsg-1) unstable; urgency=medium . * New upstream release Checksums-Sha1: 3f7742296f72652491bd9a85cf3226686bb817e0 2050

Accepted discosnp 1.2.2-1 (source amd64)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: discosnp - discovering Single Nucleotide Polymorphism from raw set(s) of rea Changes: discosnp (1.2.2-1) unstable; urgency=medium . * New upstream release Checksums-Sha1: 0270aae940eb298fbbd2959f51ebb489e3a28842 1996

Accepted cassiopee 1.0.1+dfsg-3 (source amd64 all)

Team debian-med-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: cassiopee - index and search tool in genomic sequences libcassie-dev - library and headers for development libcassie-doc - documentation for cassiopee library libcassie1 - library

Accepted cassiopee 1.0.1+dfsg-2 (source amd64 all)

Team debian-med-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: cassiopee - index and search tool in genomic sequences libcassie-dev - library and headers for development libcassie-doc - documentation for cassiopee library libcassie1 - library

Accepted opennebula-context 4.6.0-1 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: opennebula-context - contextualization package Changes: opennebula-context (4.6.0-1) unstable; urgency=medium . * New upstream release fixing missing start/stop management Checksums-Sha1

Accepted biojava-live 1:1.7.1-5 (source all)

Maintainer: Debian Med Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: libbiojava-java - Java API to biological data and applications (default version) libbiojava-java-demos - Example programs for BioJava libbiojava-java-doc

Accepted biojava3-live 3.0.7+dfsg-3 (source all)

Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: libbiojava3-java - Java API to biological data and applications (default version) libbiojava3-java-doc - [Biology] Documentation for BioJava libbiojava3.0-java - Java API

Accepted biojava3-live 3.0.7+dfsg-2 (source all)

Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: libbiojava3-java - Java API to biological data and applications (default version) libbiojava3-java-doc - [Biology] Documentation for BioJava libbiojava3.0-java - Java API

Accepted circos 0.66-1 (source all)

-packag...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: circos - plotter for visualizing data fonts-circos-symbols - plotter for visualizing data - standard fonts otf-symbols-circos - transitional dummy package Changes: circos (0.66-1) unstable

Accepted circos-tools 0.18-1 (source all)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: circos-tools - plotter for visualizing data - helper utilities Changes: circos-tools (0.18-1) unstable; urgency=medium . * New upstream release Checksums-Sha1: 8faac91c230ff29d52be2cbb81240ac55e2fdf36 1965 circos-tools_0.18

Accepted mobyle 1.5.3+dfsg-1 (source all amd64)

...@lists.alioth.debian.org Changed-By: Olivier Sallou osal...@debian.org Description: mobyle - Web portal that provides web forms for command-line software mobyle-utils - binary tools used by Mobyle Changes: mobyle (1.5.3+dfsg-1) unstable; urgency=medium . * New upstream release Checksums-Sha1

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