Package: wnpp Severity: wishlist Owner: Andreas Tille <ti...@debian.org>
* Package name : physamp Version : 0.2.0 Upstream Author : Julien Dutheil <julien.duth...@univ-montp2.fr> * URL : http://biopp.univ-montp2.fr/repos/sources/physamp * License : GPL Programming Lang: C++ Description : sample sequence alignment according to its corresponding phylogenetic tree The PhySamp package currently contains one program, bppalnoptim, which samples a sequence alignment by removing sequences in order to maximize the number of sites suitable for a given analysis. The program has three running modes: * Interactive: the user will be iteratively proposed a set of choices for sequence removal, with their corresponding site gains. The procedure stops when the user does not want to remove more sequences, and the resulting filtered alignment is written. * Automatic: the user enters an a priori criterion for stopping the filtering procedure (for instance a minimum number of sequences to keep). * Diagnostic: this mode allows one to plot the trade-off curve, by showing the site gain as a function of the number of removed sequences. Remark: This package will be maintained by the Debian Med team at https://anonscm.debian.org/git/debian-med/physamp.git