...@lists.alioth.debian.org
Changed-By: Michael R. Crusoe michael.cru...@gmail.com
Description:
python-screed - short nucleotide read sequence utils in Python
Closes: 776678
Changes:
python-screed (0.7.1-2) unstable; urgency=medium
.
* Initial upload to Debian (Closes: #776678)
Checksums-Sha1
...@lists.alioth.debian.org
Changed-By: Michael R. Crusoe mcru...@msu.edu
Description:
python-bz2file - Python library for reading and writing bzip2-compressed files
python3-bz2file - Python3 library for reading and writing bzip2-compressed
files
Closes: 787039
Changes:
python-bz2file (0.98-1
...@lists.alioth.debian.org
Changed-By: Michael R. Crusoe mcru...@msu.edu
Description:
r-cran-blockmodeling - Generalized and classical blockmodeling of valued
networks
Closes: 778587
Changes:
r-cran-blockmodeling (0.1.8-1) unstable; urgency=low
.
* Initial release (Closes: #778587)
Checksums-Sha1
...@lists.alioth.debian.org
Changed-By: Michael R. Crusoe mcru...@msu.edu
Description:
transdecoder - find coding regions within transcripts
transdecoder-doc - find coding regions within transcripts
Closes: 778300
Changes:
transdecoder (2.0.1+dfsg-1) unstable; urgency=low
.
* Initial release
...@lists.alioth.debian.org
Changed-By: Michael R. Crusoe mcru...@msu.edu
Description:
parafly- parallel command processing using OpenMP
Closes: 778331
Changes:
parafly (0.0.2013.01.21-1) unstable; urgency=low
.
* Initial release (Closes: #778331)
Checksums-Sha1:
7fce78dff89d7cd6af1cd3b1ef923e2c254066ee 1971
uby-extras-maintain...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <cru...@ucdavis.edu>
Description:
ruby-fix-trinity-output - Fix output fastq files from trinityrnaseq
Closes: 800489
Changes:
ruby-fix-trinity-output (1.0.0-1) unstable; urgency=medium
.
* Initial rel
org>
Changed-By: Michael R. Crusoe <cru...@ucdavis.edu>
Description:
rsem - RNA-Seq by Expectation-Maximization
Closes: 803550
Changes:
rsem (1.2.23+dfsg-1) unstable; urgency=medium
.
[ Michael R. Crusoe ]
* New upstream release
.
[ Andreas Tille ]
* Build-Dep
org>
Changed-By: Michael R. Crusoe <cru...@ucdavis.edu>
Description:
libgff-dev - GFF/GTF parsing from cufflinks as a library
Closes: 800336
Changes:
libgff (1.0-1) unstable; urgency=low
.
* Initial release (Closes: #800336)
Checksums-Sha1:
a30a3e5164672d9ae8339eb44ed40d629228bf65 1897
org>
Changed-By: Michael R. Crusoe <cru...@ucdavis.edu>
Description:
rsem - RNA-Seq by Expectation-Maximization
Closes: 778578
Changes:
rsem (1.2.22+dfsg-1) unstable; urgency=low
.
* Initial release (Closes: #778578)
Checksums-Sha1:
cf4465ffd932acdc4af9afd8adebe557a59bd7b3 1974
org>
Changed-By: Michael R. Crusoe <cru...@ucdavis.edu>
Description:
libspdlog-dev - Very fast, header only, C++ logging library
Closes: 800337
Changes:
spdlog (1.4-1) unstable; urgency=low
.
* Initial release (Closes: #800337)
Checksums-Sha1:
536e5690aa8d60362304f67d576c215a9
ain...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <cru...@ucdavis.edu>
Description:
ruby-colorize - color methods to Ruby String class
Changes:
ruby-colorize (0.7.7-1) unstable; urgency=medium
.
* Imported Upstream version 0.7.7
Checksums-Sha1:
3736bd8b6d07fce9826961d81796
ain...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <cru...@ucdavis.edu>
Description:
ruby-facade - facade pattern aide for Ruby
Closes: 800488
Changes:
ruby-facade (1.0.7-1) unstable; urgency=medium
.
* Initial release (Closes: #800488)
Checksums-Sha1:
47352eb86dbf51a45d20e6b992dc
ain...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <cru...@ucdavis.edu>
Description:
ruby-yell - Your Extensible Logging Library for Ruby
Closes: 800494
Changes:
ruby-yell (2.0.5-1) unstable; urgency=medium
.
* Initial release (Closes: #800494)
Ch
...@lists.alioth.debian.org
Changed-By: Michael R. Crusoe cru...@ucdavis.edu
Description:
python-screed - short nucleotide read sequence utils in Python 2
python3-screed - short nucleotide read sequence utils in Python 3
Changes:
python-screed (0.9-1) unstable; urgency=medium
.
* Update to latest
kag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <mcru...@msu.edu>
Description:
r-bioc-ebseq - R package for RNA-Seq Differential Expression Analysis
Closes: 778586
Changes:
r-bioc-ebseq (1.6.0-1) unstable; urgency=low
.
* Initial release (Closes: #778586)
Ch
kag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <cru...@ucdavis.edu>
Description:
jaligner - Smith-Waterman algorithm with Gotoh's improvement
Closes: 778489
Changes:
jaligner (1.0+dfsg-1) unstable; urgency=medium
.
* Initial release. (Closes: #778489)
Ch
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <cru...@ucdavis.edu>
Description:
berkeley-express - Streaming quantification for high-throughput sequencing
berkeley-express-doc - Documentation for RNA-Seq tool eXpress
Closes: 778589
Changes:
berkeley-expr
org>
Changed-By: Michael R. Crusoe <cru...@ucdavis.edu>
Description:
macs - Model-based Analysis of ChIP-Seq on short reads sequencers
Changes:
macs (2.1.0.20150731-1) unstable; urgency=low
.
* debian/watch: now released via PyPI.
* debian/rules:
- 2.1.0 uses a s
Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <cru...@ucdavis.edu>
Description:
jellyfish - count k-mers in DNA sequences
jellyfish-examples - count k-mers in DNA sequences (examples for testing)
libjellyfish-2.0-2 - count k-mers in D
kag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <cru...@ucdavis.edu>
Description:
bwa- Burrows-Wheeler Aligner
libbwa-dev - Burrows-Wheeler Aligner source files
Changes:
bwa (0.7.12-5) unstable; urgency=medium
.
* Make a libbwa-dev package for `salmon`.
Ch
med-packag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <cru...@ucdavis.edu>
Description:
khmer - in-memory DNA sequence kmer counting, filtering & graph traversal
khmer-common - common files for the khmer project tools
liboxli-dev - in-memory DNA sequence anal
ian-med-packag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <cru...@ucdavis.edu>
Description:
khmer - in-memory DNA sequence kmer counting, filtering & graph traversal
khmer-common - common files for the khmer project tools
liboxli-dev - in-memory DNA sequence anal
hanged-By: Michael R. Crusoe <michael.cru...@gmail.com>
Description:
mypy - Optional static typing for Python
Changes:
mypy (0.4.2-1) unstable; urgency=medium
.
* New upstream release
Checksums-Sha1:
bd5e282735d2fd38d50b282cbb7687e3f762a136 1905 mypy
org>
Changed-By: Michael R. Crusoe <michael.cru...@gmail.com>
Description:
rsem - RNA-Seq by Expectation-Maximization
Changes:
rsem (1.2.31+dfsg-1) unstable; urgency=medium
.
* New upstream release
Checksums-Sha1:
262267867c417f33a1f8497b1015f2c005f725c8 2026 rsem_1.2.3
ian-med-packag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <cru...@ucdavis.edu>
Description:
khmer - in-memory DNA sequence kmer counting, filtering & graph traversal
khmer-common - common files for the khmer project tools
liboxli-dev - in-memory DNA sequence anal
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <cru...@ucdavis.edu>
Description:
libjung-free-java - Java Universal Network/Graph Framework
libjung-free-java-doc - Java Universal Network/Graph Framework (documentation)
Closes: 368931
Changes:
libjung-free
kag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <michael.cru...@gmail.com>
Description:
r-cran-pscbs - R package: Analysis of Parent-Specific DNA Copy Numbers
Closes: 828690
Changes:
r-cran-pscbs (0.61.0-1) unstable; urgency=medium
.
* Initial release. (Closes: #828690)
Ch
kag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <michael.cru...@gmail.com>
Description:
r-cran-globals - R package: Identify Global Objects in R Expressions
Closes: 828196
Changes:
r-cran-globals (0.6.1-1) unstable; urgency=medium
.
* Initial release. (Closes: #828196)
Ch
kag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <michael.cru...@gmail.com>
Description:
r-cran-listenv - R package: Environments Behaving (Almost) as Lists
Closes: 828194
Changes:
r-cran-listenv (0.6.0-1) unstable; urgency=medium
.
* Initial release. (Closes: #828194)
Ch
kag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <michael.cru...@gmail.com>
Description:
r-cran-r.cache - R package: Fast and Light-Weight Caching of Objects and
Results
Closes: 828184
Changes:
r-cran-r.cache (0.12.0-1) unstable; urgency=medium
.
* Initial release. (Closes: #82818
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <cru...@ucdavis.edu>
Description:
python-rdflib-jsonld - rdflib extension adding JSON-LD parser and serializer
in Python 2
python3-rdflib-jsonld - rdflib extension adding JSON-LD parser and serializer
in Pyt
org>
Changed-By: Michael R. Crusoe <cru...@ucdavis.edu>
Description:
salmon - wicked-fast transcript quantification from RNA-seq data
Closes: 813994
Changes:
salmon (0.4.2+ds1-2) unstable; urgency=medium
.
* Make build reproducible.
Closes: #813994
Ch
med-packag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <cru...@ucdavis.edu>
Description:
trinityrnaseq - RNA-Seq De novo Assembly
trinityrnaseq-examples - RNA-Seq De novo Assembly common example and testing
files
Closes: 813958
Changes:
trinityrnaseq (2.1.1+dfsg-2) unsta
kag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <cru...@ucdavis.edu>
Description:
mira-assembler - Whole Genome Shotgun and EST Sequence Assembler
mira-doc - documentation for the mira assembler
mira-examples - files to experiment with the mira assembler
Changes:
mira (4.9.5
org>
Changed-By: Michael R. Crusoe <cru...@ucdavis.edu>
Description:
varna - Visualization Applet for RNA
Closes: 814050
Changes:
varna (3-93+ds-1) unstable; urgency=medium
.
* Initial release. (Closes: #814050)
Checksums-Sha1:
f358982e09a3098a3a5bf4b16ff823286fd69f3d 1909 varna_3
ian-med-packag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <cru...@ucdavis.edu>
Description:
khmer - in-memory DNA sequence kmer counting, filtering & graph traversal
khmer-common - common files for the khmer project tools
liboxli-dev - in-memory DNA sequence anal
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <cru...@ucdavis.edu>
Description:
trinityrnaseq - RNA-Seq De novo Assembly
trinityrnaseq-examples - RNA-Seq De novo Assembly common example and testing
files
Closes: 777697
Changes:
trinityrnaseq (2.1.1+dfsg
org>
Changed-By: Michael R. Crusoe <cru...@ucdavis.edu>
Description:
salmon - wicked-fast transcript quantification from RNA-seq data
Closes: 800339
Changes:
salmon (0.4.2+ds1-1) unstable; urgency=low
.
* Initial release (Closes: #800339)
Ch
kag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <cru...@ucdavis.edu>
Description:
libcereal-dev - C++11 library for serialization
libcereal-doc - C++11 library for serialization HTML documentation
Changes:
libcereal (1.1.2-3) unstable; urgency=medium
.
* Applied patch f
ian-med-packag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <cru...@ucdavis.edu>
Description:
python-schema-salad - Schema Annotations for Linked Avro Data (SALAD)
Closes: 813839
Changes:
python-schema-salad (1.6.2016020448-1) unstable; urgency=medium
.
* Initial rele
kag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <cru...@ucdavis.edu>
Description:
libcereal-dev - C++11 library for serialization
libcereal-doc - C++11 library for serialization HTML documentation
Closes: 814530
Changes:
libcereal (1.1.2-4) unstable; urgency=medium
.
* D
ian-med-packag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <cru...@ucdavis.edu>
Description:
khmer - in-memory DNA sequence kmer counting, filtering & graph traversal
khmer-common - common files for the khmer project tools
liboxli-dev - in-memory DNA sequence anal
med-packag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <cru...@ucdavis.edu>
Description:
mira-assembler - Whole Genome Shotgun and EST Sequence Assembler
mira-doc - documentation for the mira assembler
mira-examples - files to experiment with the mira assembler
Changes:
m
kag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <cru...@ucdavis.edu>
Description:
libcereal-dev - C++11 library for serialization
libcereal-doc - C++11 library for serialization HTML documentation
Closes: 800335
Changes:
libcereal (1.1.2-1) unstable; urgency=low
.
* Ini
ain...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <cru...@ucdavis.edu>
Description:
ruby-crb-blast - Run conditional reciprocal best blast
Closes: 800737
Changes:
ruby-crb-blast (0.6.4-1) unstable; urgency=medium
.
* Initial release (Closes: #800737)
Ch
kag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <cru...@ucdavis.edu>
Description:
macs - Model-based Analysis of ChIP-Seq on short reads sequencers
Changes:
macs (2.1.0.20151222-1) unstable; urgency=medium
.
* New upstream release
* A couple more spelling fixes & updated VCS URLs
kag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <cru...@ucdavis.edu>
Description:
libcereal-dev - C++11 library for serialization
libcereal-doc - C++11 library for serialization HTML documentation
Closes: 813280 813281 813282
Changes:
libcereal (1.1.2-2) unstable; ur
kag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <cru...@ucdavis.edu>
Description:
libspdlog-dev - Very fast, header only, C++ logging library
Changes:
spdlog (1.6-1) unstable; urgency=medium
.
* Update to version 1.6
* Ship examples, tests. Run the tests during build time and added
auto
kag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <cru...@ucdavis.edu>
Description:
python-screed - short nucleotide read sequence utils in Python 2
python3-screed - short nucleotide read sequence utils in Python 3
Changes:
python-screed (0.9-2) unstable; urgency=medium
org>
Changed-By: Michael R. Crusoe <cru...@ucdavis.edu>
Description:
rsem - RNA-Seq by Expectation-Maximization
Changes:
rsem (1.2.26+dfsg-1) unstable; urgency=medium
.
* New upstream release
Checksums-Sha1:
f36d5089a523c01bb9f078adf7f5649298056dc9 2028 rsem_1.2.2
med-packag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <cru...@ucdavis.edu>
Description:
python-schema-salad - Schema Annotations for Linked Avro Data (SALAD)
Changes:
python-schema-salad (1.6.2016020448-2) unstable; urgency=medium
.
* debian/watch, debian/control:
kag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <cru...@ucdavis.edu>
Description:
snap-aligner - Scalable Nucleotide Alignment Program
Closes: 812550 812551
Changes:
snap-aligner (0.18~1.0~beta.18+dfsg1-3) unstable; urgency=medium
.
* Add support for kfreebsd and non-x86, tha
org>
Changed-By: Michael R. Crusoe <cru...@ucdavis.edu>
Description:
libspdlog-dev - Very fast, header only, C++ logging library
Changes:
spdlog (1.6-2) unstable; urgency=medium
.
* Fix VCS-Git URL.
Checksums-Sha1:
bf7734c1675ebf86cfa21cc685391337d673a6a0 1904 spdl
med-packag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <cru...@ucdavis.edu>
Description:
trinityrnaseq - RNA-Seq De novo Assembly
trinityrnaseq-examples - RNA-Seq De novo Assembly common example and testing
files
Changes:
trinityrnaseq (2.1.1+dfsg2-1) unstable;
kag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <cru...@ucdavis.edu>
Description:
snap-aligner - Scalable Nucleotide Alignment Program
Closes: 800340
Changes:
snap-aligner (0.18~1.0~beta.18+dfsg1-1) unstable; urgency=low
.
* Initial release (Closes: #800340)
Ch
ain...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <cru...@ucdavis.edu>
Description:
ruby-fixwhich - ruby module that emulates the 'which' program
Closes: 800742
Changes:
ruby-fixwhich (1.0.2-1) unstable; urgency=medium
.
* Initial release (Closes: #800742)
Ch
ain...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <cru...@ucdavis.edu>
Description:
ruby-threach - Threaded each
Closes: 800734
Changes:
ruby-threach (0.2.0-1) unstable; urgency=medium
.
* Initial release (Closes: #800734)
Checksums-Sha1:
3a34c15d335229a5656281b575e2006ebd791f
kag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <cru...@ucdavis.edu>
Description:
snap-aligner - Scalable Nucleotide Alignment Program
Closes: 812376
Changes:
snap-aligner (0.18~1.0~beta.18+dfsg1-2) unstable; urgency=medium
.
* Drop -msse flag for wider platform c
ain...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <cru...@ucdavis.edu>
Description:
ruby-pathname2 - alternate implementation of the Pathname class
Closes: 800740
Changes:
ruby-pathname2 (1.7.4-1) unstable; urgency=medium
.
* Initial release (Closes: #800740)
Ch
Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <cru...@ucdavis.edu>
Description:
bamtools - toolkit for manipulating BAM (genome alignment) files
libbamtools-dev - C++ API for manipulating BAM (genome alignment) files
libbamtools-doc - docs for dyn
Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <cru...@ucdavis.edu>
Description:
bamtools - toolkit for manipulating BAM (genome alignment) files
libbamtools-dev - C++ API for manipulating BAM (genome alignment) files
libbamtools-doc - docs for dyn
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <cru...@ucdavis.edu>
Description:
jellyfish - count k-mers in DNA sequences
jellyfish-examples - count k-mers in DNA sequences (examples for testing)
kag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <cru...@ucdavis.edu>
Description:
cwltool- Common workflow language reference implementation
Closes: 814000
Changes:
cwltool (1.0.20160209222805-1) unstable; urgency=medium
.
* Initial release. (Closes: #814000)
Ch
Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <cru...@ucdavis.edu>
Description:
bamtools - toolkit for manipulating BAM (genome alignment) files
libbamtools-dev - C++ API for manipulating BAM (genome alignment) files
libbamtool
org>
Changed-By: Michael R. Crusoe <cru...@ucdavis.edu>
Description:
macs - Model-based Analysis of ChIP-Seq on short reads sequencers
Changes:
macs (2.1.1.20160226-1) unstable; urgency=medium
.
* New upstream release
Checksums-Sha1:
58581c26240f3af439d19537d30e71f65
org>
Changed-By: Michael R. Crusoe <cru...@ucdavis.edu>
Description:
rsem - RNA-Seq by Expectation-Maximization
Closes: 811615
Changes:
rsem (1.2.26+dfsg-2) unstable; urgency=medium
.
* Now compatible with g++-6 (Closes: #811615)
* Section set to 'extra' due to dependency on bo
kag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <michael.cru...@gmail.com>
Description:
transdecoder - find coding regions within RNA transcript sequences
transdecoder-doc - find coding regions within transcripts
Closes: 822268
Changes:
transdecoder (2.0.1+dfsg-3) unsta
kag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <michael.cru...@gmail.com>
Description:
transdecoder - find coding regions within RNA transcript sequences
transdecoder-doc - find coding regions within transcripts
Changes:
transdecoder (3.0.0+dfsg-1) unstable; urgency=medium
kag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <michael.cru...@gmail.com>
Description:
transdecoder - find coding regions within RNA transcript sequences
transdecoder-doc - find coding regions within transcripts
Changes:
transdecoder (3.0.0+dfsg-2) unstable; ur
med-packag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <michael.cru...@gmail.com>
Description:
trinityrnaseq - RNA-Seq De novo Assembly
trinityrnaseq-examples - RNA-Seq De novo Assembly common example and testing
files
Changes:
trinityrnaseq (2.2.0+dfsg-1) unstable; ur
kag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <michael.cru...@gmail.com>
Description:
khmer - in-memory DNA sequence kmer counting, filtering & graph traversal
khmer-common - common files for the khmer project tools
liboxli-dev - in-memory DNA sequence anal
org>
Changed-By: Michael R. Crusoe <michael.cru...@gmail.com>
Description:
jaligner - Smith-Waterman algorithm with Gotoh's improvement
Changes:
jaligner (1.0+dfsg-3) unstable; urgency=medium
.
* flip the reproducible switch for asciidoctor
Ch
ain...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <michael.cru...@gmail.com>
Description:
ruby-colorize - color methods to Ruby String class
Changes:
ruby-colorize (0.7.7-2) unstable; urgency=medium
.
* bump Standards-Version to 3.9.8
* fix tests
Ch
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <michael.cru...@gmail.com>
Description:
python-rdflib-jsonld - rdflib extension adding JSON-LD parser and serializer
in Python 2
python3-rdflib-jsonld - rdflib extension adding JSON-LD parser and serializer
org>
Changed-By: Michael R. Crusoe <michael.cru...@gmail.com>
Description:
libspdlog-dev - Very fast, header only, C++ logging library
Changes:
spdlog (1.8-1) unstable; urgency=medium
.
* new upstream release
Checksums-Sha1:
d5af3675576c6d16465ddeda0fab6dd7258616e3 1917 spdl
org>
Changed-By: Michael R. Crusoe <michael.cru...@gmail.com>
Description:
libspdlog-dev - Very fast, header only, C++ logging library
Changes:
spdlog (1.7-1) unstable; urgency=medium
.
* new upstream release
* Standards-Version: increment to 3.9.8
* Match upstream's switch to cma
ain...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <michael.cru...@gmail.com>
Description:
ruby-yell - Your Extensible Logging Library for Ruby
Changes:
ruby-yell (2.0.6-1) unstable; urgency=medium
.
* New upstream release.
* drop rspec3 patch, applied upstream
* Standards-Version:
ian-med-packag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <michael.cru...@gmail.com>
Description:
mira-assembler - Whole Genome Shotgun and EST Sequence Assembler
mira-doc - documentation for the mira assembler
mira-rfam-12s-rrna - extract of RFAM 12 rRNA database
Ch
kag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <michael.cru...@gmail.com>
Description:
transdecoder - find coding regions within RNA transcript sequences
transdecoder-doc - find coding regions within transcripts
Changes:
transdecoder (2.1.0+dfsg-1) unstable; urgency=medium
org>
Changed-By: Michael R. Crusoe <michael.cru...@gmail.com>
Description:
macs - Model-based Analysis of ChIP-Seq on short reads sequencers
Changes:
macs (2.1.1.20160309-1) unstable; urgency=medium
.
* New upstream release.
* Bump Standards-Version to 3.9.8
* Refresh
org>
Changed-By: Michael R. Crusoe <michael.cru...@gmail.com>
Description:
rsem - RNA-Seq by Expectation-Maximization
Changes:
rsem (1.2.30+dfsg-1) unstable; urgency=medium
.
* New upstream release
* Use upstream's modified samtools-1.3 as that is required for correct
opera
org>
Changed-By: Michael R. Crusoe <michael.cru...@gmail.com>
Description:
jaligner - Smith-Waterman algorithm with Gotoh's improvement
Changes:
jaligner (1.0+dfsg-2) unstable; urgency=medium
.
* Make build reproducible by switching to asciidoctor from ruby-ronn for
manual pag
org>
Changed-By: Michael R. Crusoe <michael.cru...@gmail.com>
Description:
mypy - Optional static typing for Python
Closes: 823512
Changes:
mypy (0.3.1-1) unstable; urgency=medium
.
* Initial release. (Closes: #823512)
Checksums-Sha1:
e08a4331a568bfcc87c3026c2c9810d4d853e82d 1923 mypy
hanged-By: Michael R. Crusoe <michael.cru...@gmail.com>
Description:
mypy - Optional static typing for Python
Changes:
mypy (0.4.1-1) unstable; urgency=medium
.
* New upstream release
Checksums-Sha1:
c265cbc2aed83c60bf0ea9b057c1bc2cc4c58b78 1905 mypy
kag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <michael.cru...@gmail.com>
Description:
khmer - in-memory DNA sequence kmer counting, filtering & graph traversal
khmer-common - common files for the khmer project tools
liboxli-dev - in-memory DNA sequence anal
hanged-By: Michael R. Crusoe <michael.cru...@gmail.com>
Description:
mypy - Optional static typing for Python
Changes:
mypy (0.4-1) unstable; urgency=medium
.
* New upstream release
Checksums-Sha1:
2476838fe585d53421050c6e96edd6cfed46a72b 1891 my
hanged-By: Michael R. Crusoe <michael.cru...@gmail.com>
Description:
mypy - Optional static typing for Python
Changes:
mypy (0.4.3-1) unstable; urgency=medium
.
* New upstream release
* patch typeshed/tests/pytype_test.py to use python3
Checksums-Sha1:
1a46cc9ef86fabd2ac82669afdb1
kag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <michael.cru...@gmail.com>
Description:
libcereal-dev - C++11 library for serialization
libcereal-doc - C++11 library for serialization HTML documentation
Closes: 834187
Changes:
libcereal (1.2.1-1) unstable; urgency=medium
.
*
kag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <michael.cru...@gmail.com>
Description:
r-cran-future - R package: A Future API for R
Closes: 828197
Changes:
r-cran-future (1.0.0-1) unstable; urgency=medium
.
* Initial release. (Closes: #828197)
Ch
kag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <michael.cru...@gmail.com>
Description:
r-bioc-dnacopy - R package: DNA copy number data analysis
Closes: 828189
Changes:
r-bioc-dnacopy (1.46.0-1) unstable; urgency=medium
.
* Initial release. (Closes: #828189)
Ch
kag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <michael.cru...@gmail.com>
Description:
snap-aligner - Scalable Nucleotide Alignment Program
Closes: 831138
Changes:
snap-aligner (0.18~1.0~beta.18+dfsg1-4) unstable; urgency=medium
.
* Build with -std=gnu++98, closes: 831138
Ch
kag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <michael.cru...@gmail.com>
Description:
r-bioc-geneplotter - R package of functions for plotting genomic data
Closes: 828796
Changes:
r-bioc-geneplotter (1.50.0-1) unstable; urgency=medium
.
* Initial release (Closes: #828796)
Ch
org>
Changed-By: Michael R. Crusoe <michael.cru...@gmail.com>
Description:
mypy - Optional static typing for Python
Closes: 852819
Changes:
mypy (0.470-complete-1) unstable; urgency=medium
.
* Use complete upstream source from PyPI, not incomplete tarball from
GitHub. (Clo
kag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <michael.cru...@gmail.com>
Description:
python3-gffutils - Work with GFF and GTF files in a flexible database framework
Closes: 851488
Changes:
python-gffutils (0.8.7.1-1) unstable; urgency=medium
.
* Initial release. (Closes: #85148
kag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <michael.cru...@gmail.com>
Description:
python3-pybedtools - Python 3 wrapper around BEDTools for bioinformatics work
Closes: 851358
Changes:
python-pybedtools (0.7.8-1) unstable; urgency=medium
.
* Initial release. (Clo
kag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <michael.cru...@gmail.com>
Description:
khmer - in-memory DNA sequence kmer counting, filtering & graph traversal
khmer-common - common files for the khmer project tools
liboxli-dev - in-memory DNA sequence anal
kag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <michael.cru...@gmail.com>
Description:
python3-typed-ast - AST with PEP 484 type comments support
Closes: 834590
Changes:
python3-typed-ast (0.5.5-1) unstable; urgency=medium
.
* Initial release. (Closes: #834590)
Ch
org>
Changed-By: Michael R. Crusoe <michael.cru...@gmail.com>
Description:
hisat2 - graph-based alignment of short nucleotide reads to many genomes
Closes: 834592
Changes:
hisat2 (2.0.4-1) unstable; urgency=medium
.
* Initial release. (Closes: #834592)
Ch
hanged-By: Michael R. Crusoe <michael.cru...@gmail.com>
Description:
mypy - Optional static typing for Python
Changes:
mypy (0.4.5-1) unstable; urgency=medium
.
* recommend python3-typed-ast for the fast parser
* new upstream-release
Checksums-Sha1:
e7aafc66b059f0c22fd57c000d16
kag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <michael.cru...@gmail.com>
Description:
transdecoder - find coding regions within RNA transcript sequences
transdecoder-doc - find coding regions within transcripts
Closes: 839297
Changes:
transdecoder (3.0.0+dfsg-3) unsta
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